Department of Biomolecular NMR

Dr. Witold Andrałojć

Dr. Witold Andrałojć

Head of Department

wandralojc@ibch.poznan.pl
ext. ​1286

Researchers:

Dr. Dorota Gudanis-Sobocińska
adiunkt

Prof. Zofia Gdaniec
profesor

Research activity

Research area

The primary focus of this group is on understanding the structure, function and dynamics of nucleic acids, particularly RNA. We apply both biophysical and biochemical techniques, with a strong emphasis on nuclear magnetic resonance spectroscopy (NMR). One of the major areas of our research involves structural studies of RNA quadruplexes, including their modes of interaction with various ligands. Our interests also focus on duplex-quadruplex structural hybrids, as promising tools for silencing gene expression.

  • Structural and functional studies of RNA duplex-quadruplex hybrids,
  • Silencing of gene expression using small RNAs with dual functionality,
  • Design and synthesis of G-quadruplex selective ligands,
  • G-quadruplex interactions with ligands,
  • Structure of RNA fragments composed of CGG, AGG and UGG trinucleotide repeats,
  • Conformational analysis of 2’-OMe RNA duplexes,
  • Structure elucidation of modified nucleosides with restricted conformation by means of homo- and heteronuclear NMR spectroscopy,
  • Elucidating protein dynamics through nuclear relaxation studies.
Keywords
  • NMR spectroscopy,
  • structure and dynamics of nucleic acids,
  • quadruplexes,
  • duplex-quadruplex structural hybrids,
  • CGG, AGG and UGG trinucleotide repeats,
  • ligands,
  • conformation of modified nucleosides.

Research Projects

  • NMR structural studies of 8-17 and I-R2 DNAzymes, SONATA 14, 2018/31/D/ST4/01467, 2019-2024, PI: dr Witold Andrałojć
  • Exploring the sequence-structure relationship as a starting point for the design of DNA G-quadruplexes with a given topology -- an integrative approach combining molecular simulations with experimental methods; OPUS 18; 2019/35/B/ST4/03559; 2020-2026, Leader institution – Gdańsk University of Technology; PI at ICHB PAN: prof. dr hab. Zofia Gdaniec
  • Lanthanide binding oligonucleotides (LBOs) as paramagnetic tags for NMR spectroscopy of nucleic acids, OPUS 19, 2020/37/B/ST4/03182, 2021-2026, PI: dr Witold Andrałojć
  • Anti-cancer strategy based on the induced G-quadruplex formation. Structural and biological properties of ligand-RNA/mRNA complexes., SONATA 16, 2020/39/D/ST4/03177, 2021-2025, PI: dr Dorota Gudanis-Sobocińska
  • Synthesis and structural/biophysical studies of model mRNA/mt-tRNA oligomers to evaluate the role of modified nucleosides (m5C, hm5C, f5C, ca5C, m1G) in translation and human diseases, OPUS22, 2021/43/B/ST4/01570, 2022-2026, Leader – Łódź University of Technology, PI at ICHB PAN: dr Witold Andrałojć
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