Publikacje ICHB PAN

2024

Ilyas Yildrim, Witold Andrałojć, Amirhossein Taghavi, Daniel Baranowski, Zofia Gdaniec, Ryszard Kierzek, Elżbieta Kierzek, “Experimental and computational investigations of RNA duplexes containing N7-regioisomers of adenosine and LNA-adenosine”, Nucleic Acids Research, art. nr gkae1222, 2024. DOI: 10.1093/nar/gkae1222
Olga Wawrzyniak, Dariusz Wawrzyniak, Michał Smuszkiewicz, Paweł Głodowicz, Anna Gotz-Więckowska, Katarzyna Rolle, “Exploring microRNA signatures in pediatric non-infectious uveitis: meta-analysis and molecular profiling of patient samples”, Journal of Applied Genetics, 2024. DOI: 10.1007/s13353-024-00922-8

Kinga Ciechanowska, Agnieszka Szczepańska, Kamil Szpotkowski, Klaudia Wójcik, Anna Urbanowicz, Anna Kurzyńska-Kokorniak, “The human Dicer helicase domain is capable of ATP hydrolysis and single-stranded nucleic acid binding”, BMC Biology, 22, art. nr 287, 2024. DOI: 10.1186/s12915-024-02082-x

Magdalena Woźna-Wysocka, Magdalena Jazurek-Ciesiołka, Łukasz Przybył, Dorota Wronka, Julia Oliwia Misiorek, Joanna Suszyńska-Zajczyk, Grzegorz Figura, Adam Ciesiołka, Paula Sobieszczańska, Anna Zeller, Magdalena Niemira, Paweł Michał Świtoński, Agnieszka Fiszer, “Insights into RNA-mediated pathology in new mouse models of Huntington's disease”, FASEB Journal, 38, art. nr e70182, 2024. DOI: 10.1096/fj.202401465R

Paweł Śledziński, Mateusz Nowaczyk, Marianna Iga Śmiełowska, Marta Olejniczak, “CRISPR/Cas9-induced double-strand breaks in the huntingtin locus lead to CAG repeat contraction through DNA end resection and homology-mediated repair”, BMC Biology, 22, art. nr 282, 2024. DOI: 10.1186/s12915-024-02079-6

Fan Bu, Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa Rebeca H. de Aquino, Nagendar Goud Badepally, Robert T. Batey, Eugene F. Baulin, Pawel Boinski, Michal J. Boniecki, Janusz M. Bujnicki, Kristy A. Carpenter, Jose Chacon, Shi-Jie Chen, Wah Chiu, Pablo Cordero, Naba Krishna Das, Rhiju Das, Wayne K. Dawson, Frank DiMaio, Feng Ding, Anne-Catherine Dock-Bregeon, Nikolay V. Dokholyan, Ron O. Dror, Stanisław Dunin-Horkawicz, Stephan Eismann, Eric Ennifar, Reza Esmaeeli, Masoud Amiri Farsani, Adrian R. Ferré-D’Amaré, Caleb Geniesse, George E. Ghanim, Horacio V. Guzman, Iris V. Hood, Lin Huang, Dharm Skandh Jain, Farhang Jaryani, Lei Jin, Astha Joshi, Masha Karelina, Jeffrey S. Kieft, Wipapat Kladwang, Sebastian Kmiecik, Deepak Koirala, Markus Kollmann, Rachael C. Kretsch, Mateusz Kurciński, Jun Li, Shuang Li, Marcin Magnus, BenoÎt Masquida, S. Naeim Moafinejad, Arup Mondal, Sunandan Mukherjee, Thi Hoang Duong Nguyen, Grigory Nikolaev, Chandran Nithin, Grace Nye, Iswarya P. N. Pandaranadar Jeyeram, Alberto Perez, Phillip Pham, Joseph A. Piccirilli, Smita Priyadarshini Pilla, Radosław Pluta, Simón Poblete, Almudena Ponce-Salvatierra, Mariusz Popenda, Łukasz Popenda, Fabrizio Pucci, Ramya Rangan, Angana Ray, Aiming Ren, Joanna Sarzynska, Congzhou Mike Sha, Filip Stefaniak, Zhaoming Su, Krishna C. Suddala, Marta Szachniuk, Raphael Townshend, Robert J. Trachman III, Jian Wang, Wenkai Wang, Andrew Watkins, Tomasz K. Wirecki, Yi Xiao, Peng Xiong, Yiduo Xiong, Jianyi Yang, Joseph David Yesselman, Jinwei Zhang, Yi Zhang, Zhenzhen Zhang, Yuanzhe Zhou, Tomasz Zok, Dong Zhang, Sicheng Zhang, Adriana Żyła, Eric Westhof, Zhichao Mao, “RNA-Puzzles Round V: blind predictions of 23 RNA structures”, Nature Methods, 2024. DOI: 10.1038/s41592-024-02543-9

Daniel Fochtman, Łukasz Marczak, Monika Pietrowska, Anna Wojakowska, “Challenges of MS-based small extracellular vesicles proteomics”, Journal of Extracellular Vesicles, 13, art. nr e70020, 2024. DOI: 10.1002/jev2.70020

Monika Rojewska, Joanna Romanowska, Adam Kraszewski, Michał Sobkowski, Krystyna Prochaska, “The Interactions of Anti-HIV Pronucleotides with a Model Phospholipid Membrane”, Molecules, 29, art. nr 5787, 2024. DOI: 10.3390/molecules29235787

João Paulo Rodrigues Martins, Mikołaj Krzysztof Wawrzyniak, Ewa Marzena Kalemba, Juan Manuel Ley-López, Marcel Merlo Mendes, Mirosława Zofia Naskręt-Barciszewska, Jan Barciszewski, Paweł Chmielarz, „Differential morphophysiological and epigenetic responses during in vitro multiplication of Quercus robur depending on donor age and plant growth regulators”, Plant Cell, Tissue & Organ Culture, 159, art. nr 62, 2024. DOI: 10.1007/s11240-024-02914-2

Stanisław Trzciński, Jolanta Brzezińska, Krzysztof Waligórski, Joanna Strzelec, Katarzyna Kolet, Mateusz Klarek, Oskar Kołacki, Marcin K. Chmielewski, „Hybrid Supports for Oligonucleotide Synthesis: Controlled Pore Glass Derivatives with Branched Amine-Ended Polyether or Polyimine”, Chemistry-A European Journal, DOI: 10.1002/chem.202403086

Luke C. Bartelt, Paweł M. Świtoński, Grażyna Adamek, Fabiana Longo, Juliana Carvalho, Lisa A. Duvick, Sabrina I. Jarrah, Hayley S. McLoughlin, Daniel R. Scoles, Stefan M. Pulst, Harry T. Orr, Court Hull, Craig B. Lowe, Albert R. La Spada, “Dysregulation of zebrin-II cell subtypes in the cerebellum is a shared feature across polyglutamine ataxia mouse models and patients”, Science Translational Medicine, 16, art. nr eadn5449, 2024. DOI: 10.1126/scitranslmed.adn5449

Robert Kamieniarz, Michał Szymański, Magdalena Woźna-Wysocka, Bartłomiej M. Jaśkowski, Marcin K. Dyderski, Emilia Pers-Kamczyc, Maciej Skorupski, „Roe Deer Reproduction in Western Poland: The Late Autumn Rut Phenomenon”, Animals, 14, art. nr 3078, 2024. DOI: 10.3390/ani14213078

Marcin Radom, Agnieszka Rybarczyk, Igor Piekarz, Piotr Formanowicz, „Algorithms for evaluation of minimal cut sets”, Journal of Biomedical Informatics, 159, art. nr 104740, 2024. DOI: 10.1016/j.jbi.2024.104740

A. Barciszewska, A. Belter, J. F. Barciszewski, I. Gawrońska, M. Giel-Pietraszuk, M. Z. Naskręt-Barciszewska, „A Metformin Repurposing for Globalistoma Treatment”, Neuro-Oncology, 26, 2024. DOI: 10.1093/neuonc/noae144.457

Sofiia Baranykova, Rishikesh Kumar Gupta, Arkadiusz Kajdasz, Iga Wasilewska, Matylda Macias, Alesandra Szybińska, Tomasz Węgierski, Karim Abu Nahia, Shamba S. Mondal, Cecila L. Winata, Jacek Kuźnicki, Łukasz Majewski, “Loss of Stim2 in zebrafish induces glaucoma-like phenotype”, Scientific Reports, 14, art. nr 24442, 2024. DOI: 10.1038/s41598-024-74909-0

Maja Szymczak, Marcin Runowski, Dorota Kwiatek, Szymon Sobczak, Przemysław Woźny, Maciej Kubicki, Grzegorz Dutkiewicz, Andrzej Katrusiak, Łukasz Marciniak, “ Multimodal luminescence manometers based on a novel organic complex material – Eu(bpyO2)4(PF6)3”, Journal of Materials Chemistry C, 2024. DOI:10.1039/d4tc03005b

Marta Mackowiak, Bartosz Adamczyk, Marta Szachniuk, Tomasz Zok, “RNAtango: Analysing and comparing RNA 3D structures via torsional angles”, Plos. Computational Biology, 20, art. nr e1012500, 2024. DOI: 10.1371/journal.pcbi.1012500

Yvonne S.L. Choo, Jacek L. Kolanowski, Jovana V. Milić, Fun Man Fung, “The Retrosynthesis Mindset: A Problem-Solving tool”, Synlett, 2024. DOI: 10.1055/s-0043-1775406

Rafał Nowak, Monika Gazecka, Markus Hoffmann, Ryszard Kierzek, Stefan Pöhlmann, Paweł Zmora, TMPRSS2-specific antisense oligonucleotides inhibit host cell entry of emerging viruses, Virology, 600, art. nr 110218, 2024. DOI: 10.1016/j.virol.2024.110218

Agnieszka Piasecka, Michał W. Szcześniak, Michał Sekrecki, Arkadiusz Kajdasz, Łukasz J. Sznajder, Anna Baud, Krzysztof Sobczak, “MBNL splicing factors regulate the microtranscriptome of skeletal muscles”, Nucleic Acids Research, art. nr gkae774, 2024. DOI: 10.1093/nar/gkae774

Anna Maria Barciszewska, Agnieszka Belter, Jakub F. Barciszewski, Iwona Gawrońska, Małgorzata Giel-Pietraszuk, Mirosława Z. Naskręt-Barciszewska, “Mechanistic Insights on Metformin and Arginine Implementation as Repurposed Drugs in Glioblastoma Treatment”, International Journal of Molecular Sciences, 25, art. nr 9460, 2024. DOI: 10.3390/ijms25179460

Maciej Wiesner, Jan Barciszewski, Agnieszka Belter, Andrzej Sierakowski, Adrian Drzazga, Marcin K. Chmielewski, “ Low bias charge transport in DNA”, Scientific Reports, 14, art. nr 22405, 2024. DOI: 10.1038/s41598-024-74133-w

Wojciech Witek, Barbara Imiołczyk, Miłosz Ruszkowski, “Structural, kinetic, and evolutionary peculiarities of HISN3, a plant 5′-ProFAR isomerase”, Plant Physiology and Biochemistry, 215, art. nr 109065, 2024. DOI: 10.1016/j.plaphy.2024.109065

Magdalena Gaweł, Piotr H. Małecki, Joanna Śliwiak,Marlena Stępniewska, Barbara Imiołczyk, Justyna Czyrko-Horczak, Dorota Jakubczyk, Łukasz Marczak, Marta Eliza Płońska-Brzezińska, Krzysztof Brzeziński, “A closer look at molecular mechanisms underlying inhibition of S-adenosyl-l-homocysteine hydrolase by transition metal cations”, Chemical Comminucations, 2024. DOI: 10.1039/d4cc03143a

Joanna Nowak-Karnowska, Agata Głuszyńska, Joanna Kosman, Anna Dembska, “Fluorescence Turn-Off Ligand for Parallel G-Quadruplexes”, Molecules, 29, art. nr 3907, 2024. DOI: 10.3390/molecules29163907

Klaudia Stachowiak, Michał Zabiszak, Jakub Grajewski, Anna Teubert, Anna Bajek, Renata Jastrząb, “Thermodynamic Studies of Complexes in Cu(II)/Uridine-5′-Diphosphoglucuronic Acid System”, Molecules, 29, 3695, 2024. DOI: 10.3390/molecules29153695

Lucyna Stachowiak, Weronika Kraczkowska, Aleksandra Świercz, Paweł Piotr Jagodziński, “Circulating non-coding RNA in type 1 diabetes mellitus as a source of potential biomarkers – An emerging role of sex difference”, Biochemical and Biophysical Research Communications, 736, art. nr 150482, 2024. DOI: 10.1016/j.bbrc.2024.150482

Marta Grzechowiak, Joanna Śliwiak, Andreas Link, Miłosz Ruszkowski, “Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies”, International Journal of Biological Macromolecules, 278, art. nr 134648, 2024. DOI: 10.1016/j.ijbiomac.2024.134648

Agnieszka Fiszer, Emilia Kozłowska, Magdalena Jazurek-Ciesiołka, “From design to cellular processing: Insights into sequencing of vectorized therapeutic small RNAs”, Molecular Therapy Nucleic Acids, 35, art. nr 102277, 2024. DOI: 10.1016/j.omtn.2024.102277

Justyna Gołębiewska, Michał Sobkowski, Jacek Stawiński, “Synthesis of Nucleoside Selenophosphoramidates via H-Phosphonate Intermediates”, Journal of Organic Chemistry, 2024. DOI: 10.1021/acs.joc.4c00770

Satenik Mkrtchyan, Michał Jakubczyk, Sehrish Sarfaraz, Khurshid Ayub, Viktor O. Iaroshenko, “Ru-catalyzed activation of free phenols in a one-step Suzuki–Miyaura cross-coupling under mechanochemical conditions”, Chemical Science, 2024. DOI: 10.1039/D4SC01704H

Michał Budnik, Jakub Wawrzyniak, Łukasz Grala, Miłosz Kadziński, Natalia Szóstak, “Deep dive into RNA: a systematic literature review on RNA structure prediction using machine learning methods”, Artificial Inteligence Review, 57, art. nr 254, 2024. DOI: 10.1007/s10462-024-10910-3

Yao-Wen Sang, Jun-Qiang Wang, Małgorzata Sterna, Jacek Błażewicz, “Single machine scheduling with the total weighted late work and rejection cost”, Naval Research Logistics, 2024. DOI: 10.1002/nav.22222

Julian C.-H. Chen, Mirosław Gilski, Changsoo Chang, Dominika Borek, Gerd Rosenbaum, Alex Lavens, Zbyszek Otwinowski, Maciej Kubicki, Zbigniew Dauter, Mariusz Jaskólski, Andrzej Joachimiak, “Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature”, IUCrJ, 11, 649-663, 2024. DOI:10.1107/S2052252524007784

Klaudia Stachowiak, Michał Zabiszak, Jakub Grajewski, Anna Teubert, Anna Bajek, Renata Jastrząb, “Thermodynamic Studies of Complexes in Cu(II)/Uridine-5′-Diphosphoglucuronic Acid System”, Molecules, 29, art. nr 3695, 2024. DOI: 10.3390/molecules29153695

Hanna Fuchs, Aleksandra M. Staszak, Paola A. Vargas, Mariam Sahrawy, Antonio J. Serrato, Marcin K. Dyderski, Ewelina A. Klupczyńska, Paweł Głodowicz, Katarzyna Rolle, Ewelina Ratajczak, “Redox dynamics in seeds of Acer spp: unraveling adaptation strategies of different seed categories”, Frontiers in Plant Science, 15, art. nr 1430695, 2024. DOI: 10.3389/fpls.2024.1430695

A. Wlodawer, Z. Dauter, J. Lubkowski, J.I. Loch, D. Brzeziński, M. Gilski, M. Jaskólski, “Towards a dependable data set of structures for L-asparaginase research”, Acta Crystallographica Section D- Structural Biology, D80, 506-527, 2024. DOI: 10.1107/S2059798324005461

Katarzyna Szafran, Dominik Rafalski, Krzysztof Skowronek, Marek Wojciechowski, Asgar abbas Kazrani, Mirosław Gilski, Shuang-yong Xu, Matthias Bochtler, “Structural analysis of the BisI family of modification dependent restriction endonucleases”, Nucleic Acids Research, 52, 9103-9118, 2024. DOI: 10.1093/nar/gkae634,

Przemysław Biegański, Monika Gazecka, Rafał Nowak, Aleksander Górski, Natalia Dutkiewicz, Daniel Fábio Kawano, Paweł Zmora, Konrad Kowalski, “Organometallic–Erlotinib Conjugates Active against Lung Cancer Cells and as Emerging Virus Entry Inhibitors”, Organometallics, 2024. DOI: 10.1021/acs.organomet.4c00145

Satenik Mkrtchyan, Michał Jakubczyk, Sehrish Sarfaraz, Khurshid Ayub, Vishal B. Purohit, Oleksandr Shalimov, Viktor O. Iaroshenko, “One-step Ru-catalyzed conversion of phenolic OH groups to trifluoromethyl under mechanochemical conditions”, Cell Reports Physical Science, 5, art. nr 102062, 2024. DOI: 10.1016/j.xcrp.2024.102062

Piotr H. Małecki, Georg M. Fassauer, Nicole Rüger, Lukas Schulig, Andreas Link, Oxana Krylova, Udo Heinemann, Manfred S. Weiss, “Structure-based mapping of the histone-binding pocket of KDM4D using functionalized tetrazole and pyridine core compounds”, European Journal of Medicinal Chemistry, 276, art. nr 116642, 2024. DOI: 10.1016/j.ejmech.2024.116642

Agnieszka Baliga-Gil, Marta Soszyńska-Jóźwiak, Agnieszka Ruszkowska, Izabela Szcześniak, Ryszard Kierzek, Maria Ciechanowska, Magdalena Trybus, Paulina Jackowiak, Jake M. Peterson, Walter N. Moss, Elżbieta Kierzek, “Targeting sgRNA N secondary structure as a way of inhibiting SARS-CoV-2 replication”, Antiviral Research, 228, art. nr 105946, 2024. DOI: 10.1016/j.antiviral.2024.105946

Joanna Skiba, Marius Hirschfeld, Heinrich Lang, Damian Trzybiński, Krzysztof Woźniak, Monika Gazecka, Paweł Zmora, Konrad Kowalski, “Click—ferrocenyl nucleotides—synthesis, electrochemistry, and antiproliferative activity studies”, Journal of Organometallic Chemistry, 1016, art. nr 123242, 2024. DOI: 10.1016/j.jorganchem.2024.123242

Agata Głuszyńska, Joanna Kosman, Shang Shiuan Chuah, Marcin Hoffmann, Shozeb Haider, “Carbazole Derivatives Binding to Bcl-2 Promoter Sequence G-quadruplex”, Pharmaceuticals, 17, art. nr 912, 2024. DOI: 10.3390/ph17070912

Sílvia Carbonell-Sala, Tamara Perteghella, Julien Lagarde, Hiromi Nishiyori, Emilio Palumbo, Carme Arnan, Hazuki Takahashi, Piero Carninci, Barbara Uszczyńska-Ratajczak, Roderic Guigó, “CapTrap-seq: a platform-agnostic and quantitative approach for high-fidelity full-length RNA sequencing”, Nature Communications, 15, art. nr 5278, 2024. DOI: 10.1038/s41467-024-49523-3

Luke C. Bartelt, Mouad Fakhri, Grażyna Adamek, Magdalena Trybus, Anna Samelak-Czajka, Paulina Jackowiak, Agnieszka Fiszer, Craig B. Lowe, Albert R. La Spada, Paweł M. Świtoński, “Antibody-assisted selective isolation of Purkinje cell nuclei from mouse cerebellar tissue”, Cell Reports Methods, 4, art. nr 100816, 2024. DOI: 10.1016/j.crmeth.2024.100816

Martyna Kordyś, Anna Urbanowicz, “3D Puzzle at the Nanoscale–How do RNA Viruses Self-Assemble their Capsids into Perfectly Ordered Structures”, Macromolecular Bioscience, 2024. DOI: 10.1002/mabi.202400088

Barbara Mirska, Michał Zeńczak, Katarzyna Nowis, Ireneusz Stolarek, Jan Podkowiński, Magdalena Rakoczy, Małgorzata Marcinkowska-Swojak, Natalia Koralewska, Paweł Zmora, Elżbieta Lenartowicz Onyekaa, Marcin Osuch, Katarzyna Łasińska, Jadwiga Kuczma-Napierała, Marcelina Jaworska, Łukasz Madej, Marzena Ciechomska, Aleksander Jamsheer, Krzysztof Kurowski, Marek Figlerowicz, Luiza Handschuh, “The landscape of the COVID-19 pandemic in Poland emerging from epidemiological and genomic data”, Scientific Reports, 14, art. nr 14416, 2024. DOI: 10.1038/s41598-024-65468-5

Klementyna Marciniak, Agata Tyczewska, Kamilla Grzywacz, “Genetics of antibiotic resistance in methicillin-resistant Staphylococcus aureus (MRSA)”, BioTechnologia, 105, 169-177, 2024. DOI: 10.5114/bta.2024.139756h

Martyna Kordyś, Anna Urbanowicz, “3D Puzzle at the Nanoscale–How do RNA Viruses Self-Assemble their Capsids into Perfectly Ordered Structures”, Macromolecular Bioscience, art. nr 2400088, 2024. DOI: 10.1002/mabi.202400088

Angelika Andrzejewska-Romanowska, Julita Gumna, Ewa Tykwińska, Katarzyna Pachulska-Wieczorek, “Mapping the structural landscape of the yeast Ty3 retrotransposon RNA genome”, Nucleic Acids Research, art. nr gkae494, 2024. DOI: 10.1093/nar/gkae494

Julian Zacharjasz, Marta Sztachera, Michał Smuszkiewicz, Monika Piwecka, “Micromanaging the neuroendocrine system – A review on miR-7 and the other physiologically relevant miRNAs in the hypothalamic–pituitary axis”, Febs Letters, 2024. DOI: 10.1002/1873-3468.14948

Mariia Dekaliuk, Zdeněk Farka, Niko Hildebrandt, “The pros and cons of nucleic acid-amplified immunoassays—a comparative study on the quantitation of prostate-specific antigen with and without rolling circle amplification”, Analytical and Bioanalytical Chemistry, 2024. DOI: 10.1007/s00216-024-05357-y

Irena Bak-Sypien, Tomasz Pawlak, Piotr Paluch, Aneta Wróblewska, Rafał Dolot, Aleksandra Pawłowicz, Małgorzata Szczesio, Ewelina Wielgus, Sławomir Kaźmierski, Marcin Górecki, Roza Pawłowska, Arkadiusz Chworos, Marek J. Potrzebowski, “Influence of heterochirality on the structure, dynamics, biological properties of cyclic(PFPF) tetrapeptides obtained by solvent-free ball mill mechanosynthesis”, Scientific Reports, 14, art. nr 12825, 2024. DOI: 10.1038/s41598-024-63552-4

Paweł Głodowicz, Konrad Kuczyński, Romain Val, André Dietrich, Katarzyna Rolle, “Mitochondrial transport of catalytic RNAs and targeting of the organellar transcriptome in human cells”, Journal of Molecular Cell Biology, art. nr mjad051, 2024. DOI: 10.1093/jmcb/mjad051

Cledi A Cerda-Jara, Seung Joon Kim, Gwendolin Thomas, Zohreh Farsi, Grygoriy Zolotarov, Giuliana Dube, Aylina Deter, Ella Bahry, Elisabeth Georgii, Andrew Woehler, Monika Piwecka, Nikolaus Rajewsky, “miR-7 controls glutamatergic transmission and neuronal connectivity in a Cdr1as-dependent manner”, Embo Reports, 2024. DOI: 10.1038/s44319-024-00168-9

Katarzyna Mazur-Malewska, Magdalena Łuczak, Joanna Watral, Paweł Małecki, Anna Mania, Magdalena Figlerowicz,
“The Impact of Acute EBV Infection on Changes in the Serum Proteome in Children—A Pilot Study”, Pathogens, 13, art. nr 471, 2024. DOI: 10.3390/pathogens13060471

Urszula Kazimierczak, Anna Przybyła, Marianna Smielowska, Tomasz Kolenda, Andrzej Mackiewicz, “Targeting the Hippo Pathway in Cutaneous Melanoma”, Cells,
13, art. nr 1062, 2024. DOI: 10.3390/cells13121062

Piotr J. Pietras, Anna Wasilewska-Burczyk, Kamila Pepłowska, Łukasz Marczak, Agata Tyczewska, Kamilla Grzywacz, “Dynamic protein composition of Saccharomyces cerevisiae ribosomes in response to multiple stress conditions reflects alterations in translation activity”, International Journal of Biological Macromolecules, 268, art. nr 132004, 2024. DOI: 10.1016/j.ijbiomac.2024.132004

Julia Wieruszewska, Aleksandra Pawłowicz, Ewa Połomska, Karol Pasternak, Zofia Gdaniec, Witold Andrałojć, “The 8-17 DNAzyme can operate in a single active structure regardless of metal ion cofactor”, Nature Communications, 15, art. nr 4218, 2024. DOI: 10.1038/s41467-024-48638-x

Marek Kazimierczyk, Agnieszka Fedoruk-Wyszomirska, Dorota Gurda-Woźna, Eliza Wyszko, Agata Świątkowska, Jan Wrzesiński, “The expression profiles of piRNAs and their interacting Piwi proteins in cellular model of renal development: Focus on Piwil1 in mitosis”, European Journal of Cell Biology, 103, art. nr 151444, 2024. DOI: 10.1016/j.ejcb.2024.151444

Paweł Wojciechowski, Marta Kasprzak, “Assignment of Tasks to Machines Under Data Replication with a Tie to Steiner Systems”, International Journal of Applied Mathematics and Computer Science, 34, 263-275, 2024. DOI: 10.61822/amcs-2024-0019

Leszek Błaszczyk, Marcin Ryczek, Bimolendu Das, Martyna Mateja-Pluta, Magdalena Bejger, Joanna Śliwiak, Kazuhiko Nakatani, Agnieszka Kiliszek, “Antisense RNA C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms a triplex-like structure and binds small synthetic ligand”, Nucleic Acids Research, art. nr gkae376, 2024. DOI: 10.1093/nar/gkae376

Hieronim Jakubowski, Marta Sikora, Ewa Bretes, Joanna Perła-Kaján, Olga Utyro, Izabela Wojtasz, Radosław Kaźmierski, Marcin Frankowski, Anetta Zioła-Frankowska, “Association of Metallic and Nonmetallic Elements with Fibrin Clot Properties and Ischemic Stroke”, Life, 16, art. nr 634, 2024. DOI: 10.3390/life14050634

Anna Ściuk, Kinga Wątor, Izabela Staroń, Paulina Worsztynowicz, Kinga Pokrywka, Joanna Śliwiak, Marta Kilichowska, Kamila Pietruszewska, Zofia Mazurek, Anna Skalniak, Krzysztof Lewandowski, Mariusz Jaskólski, Joanna I. Loch, Marcin Surmiak, “Substrate Affinity Is Not Crucial for Therapeutic L-Asparaginases: Antileukemic Activity of Novel Bacterial Enzymes”, 29, art. nr 2272, 2024. DOI: 10.3390/molecules29102272

Karol Kurpiejewski, Karolina Piecyk, Maciej Łukaszewicz, Karol Kamel, Kazimierz Chmurski, Sebastian Kmiecik, Marzena Jankowska-Anyszka, “The Synergistic Effect of N2 and N7 Modifications on the Inhibitory Efficacy of mRNA Cap Analogues”, Pharmaceuticals, 17, art. nr 632, 2024. DOI: 10.3390/ph17050632

Dagny Lorent, Rafał Nowak, Magdalena Figlerowicz, Luiza Handschuh, Paweł Zmora, “Anti-SARS-CoV-2 Antibodies Level and COVID-19 Vaccine Boosters among Healthcare Workers with the Highest SARS-CoV-2 Infection Risk—Follow Up Study”, Vaccines, 12, art. nr 475, 2024. DOI:
10.3390/vaccines12050475

Nicoletta Makowska-Zawierucha, Artur Trzebny, Krzysztof Zawierucha, Vineeth Manthapuri, James A. Bradley, Amy Pruden, “Arctic plasmidome analysis reveals distinct relationships among associated antimicrobial resistance genes and virulence genes along anthropogenic gradients”, Global Change Biology, 30, art. nr e17293, 2024. DOI: 10.1111/gcb.17293

Natalia Koralewska, Eloina Corradi, Marek C. Milewski, Linda Masante, Agnieszka Szczepańska, Ryszard Kierzek, Marek Figlerowicz, Marie-Laurie Baudet, Anna Kurzyńska-Kokorniak, “Short 2′-O-methyl/LNA oligomers as highly-selective inhibitors of miRNA production in vitro and in vivo”, Nucleic Acids Research, art. nr gkae284, 2024. DOI: 10.1093/nar/gkae284

Klaudia Żebrowska , Małgorzata Grabowska , Emerson Coy , Katarzyna Rolle , Radosław Mrówczyński, Bartosz F. Grześkowiak, “In vitro anticancer activity of melanin-like nanoparticles for multimodal therapy of glioblastoma”, Nanotechnology Reviews, 13, art. nr 20230206, 2024. DOI: 10.1515/ntrev-2023-0206

Alwine Wilkens, Paweł Czerniawski, PawełBednarek, Marta Libik-Konieczny, Kenji Yamada, “ATML1 Regulates the Differentiation of ER Body–Containing Large Pavement Cells in Rosette Leaves of Brassicaceae Plants”, Plant and Cell Physiology, art. nr pcae039, 2024. DOI: 10.1093/pcp/pcae039

Michał Żurkowski, Mateusz Świercz, Filip Woźny, Maciej Antczak, Marta Szachniuk, “RNAhugs web server for customized 3D RNA structure alignment”, Nucleic Acids Research, art. nr gkae259, 2024. DOI: 10.1093/nar/gkae259

Kinga Pokrywka, Marta Grzechowiak, Joanna Śliwiak, Paulina Worsztynowicz, Joanna I. Loch, Miłosz Ruszkowski, Mirosław Gilski, Mariusz Jaskólski, “Probing the active site of Class 3 L-asparaginase by mutagenesis. I. Tinkering with the zinc coordination site of ReAV”, Frontiers in Chemistry, art. nr 1381032, 2024. DOI: 10.3389/fchem.2024.1381032

Jessica M. González-Delgado, Peter M. Thompson, Witold Andrałojć, Zofia Gdaniec, Reza A. Ghiladi, Stefan Franzen, “Comparison of the Backbone Dynamics of Dehaloperoxidase-Hemoglobin Isoenzymes”, Journal of Physical Chemistry B, 128, 3383–3397, 2024. DOI: 10.1021/acs.jpcb.3c07176

Agnieszka Rybarczyk, Dorota Formanowicz, Piotr Formanowicz, “The Role of Macrophage Dynamics in Atherosclerosis Analyzed Using a Petri Net-Based Model”, Applied Sciences-Basel, 14, art. nr 3219, 2024. DOI: 10.3390/app14083219

Piotr Pawlak, Paulina Lipińska, Ewa Sell-Kubiak, Arkadiusz Kajdasz, Natalia Derebecka, Ewelina Warzych, “Energy metabolism disorders during in vitro maturation of bovine cumulus-oocyte complexes interfere with blastocyst quality and metabolism”, Developmental Biology, 509, 51-58, 2024. DOI: 10.1016/j.ydbio.2024.02.004

Anna Niewiadomska-Cimicka, Lorraine Fievet, Magdalena Surdyka, Ewelina Jesion, Céline Keime, Elisabeth Singer, Aurélie Eisenmann, Żaneta Kalinowska-Poska, Hoa Huu Phuc Nguyen, Agnieszka Fiszer, Maciej Figiel, Yvon Trottier, “AAV-Mediated CAG-Targeting Selectively Reduces Polyglutamine-Expanded Protein and Attenuates Disease Phenotypes in a Spinocerebellar Ataxia Mouse Model”, International Journal of Molecular Sciences, 25, art. nr 4354, 2024. DOI: 10.3390/ijms25084354

Flavia Scoyni, Valeriia Sitnikova, Luca Giudice, Paula Korhonen, Davide M. Trevisan, Ana Hernandez de Sande, Mireia Gomez-Budia, Raisa Giniatullina, Irene F. Ugidos, Hiramani Dhungana, Cristiana Pistono, Nea Korvenlaita, Nelli-Noora Välimäki, Salla M. Kangas, Anniina E. Hiltunen, Emma Gribchenko, Minna U. Kaikkonen-Määttä, Jari Koistinaho, Seppo Ylä-Herttuala, Reetta Hinttala, Morten T. Veno, Junyi Su, Markus Stoffel, Anne Schaefer, Nikolaus Rajewsky, Jorgen Kjems, Mary P. Lapierre, Monika Piwecka, Jukka Jolkkonen, Rashid Giniatullin, Thomas B. Hansen, Tarja Malm, “ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling”, Cell Reports, 43, art. nr 113862, 2024. DOI: 10.1016/j.celrep.2024.113862

Damian M. Janecki, Raneet Sen, Natalia Szóstak, Arkadiusz Kajdasz, Martyna Kordyś, Kinga Plawgo, Dmytro Pandakov, Anna Philips, Zbigniew Warkocki, “LINE-1 mRNA 3′ end dynamics shape its biology and retrotransposition potential”, Nucleic Acids Research, 52, 3327-3345, 2024. DO: I10.1093/nar/gkad1251

Asli Eşme, Dorota Kwiatek, Zbigniew Hnatejko, “Solvent effects on spectroscopic, electronic, and topological analyses, Hirshfeld surface, ADME, and molecular docking studies on antiviral pyridine carboxamide derivatives”, Journal of Molecular Liquids, 396, 123940, 2024. DOI:10.1016/j.molliq.2023.123940

Malwina Suszyńska, Magdalena Machowska, Eliza Fraszczyk, Maciej Michalczyk, Anna Philips, Paulina Gałka-Marciniak, Piotr Kozłowski, “CMC: Cancer miRNA Census – a list of cancer-related miRNA genes”, Nucleic Acids Research, 52, 1628-1644, 2024. DO: I10.1093/nar/gkae017

Robert Kamieniarz, Michał Szymański, Marcin K. Dyderski, Grzegorz Górecki, Bartłomiej M. Jaśkowski, Maciej Skorupski, Jacek Skubis, Magdalena Woźna-Wysocka, Dariusz Zalewski, “Less and less roe deer in the forest – population and habitat reasons”, Sylwan, 168, 408-422, 2024. DOI: 10.26202/sylwan.2024010

Ewa Totoń, Natalia Lisiak, Aleksandra Romaniuk-Drapała, Grzegorz Framski, Eliza Wyszko, Tomasz Ostrowski, “Cytotoxic effects of kinetin riboside and its selected analogues on cancer cell lines”, Bioorganic & Medicinal Chemistry Letters, 100, art. nr 129628, 2024. DOI: 10.1016/j.bmcl.2024.129628

Katarzyna Sutor-Świeży, Renata Górska, Agnieszka Kumorkiewicz-Jamro, Ewa Dziedzic, Monika Bieniasz, Przemysław Mielczarek, Łukasz Popenda, Karol Pasternak, Małgorzata Tyszka-Czochara, Monika Baj-Krzyworzeka, Monika Stefańska, Przemysław Błyszczuk, and Sławomir Wybraniec, “Basella alba L. (Malabar Spinach) as an Abundant Source of Betacyanins: Identification, Stability, and Bioactivity Studies on Natural and Processed Fruit Pigments”, Journal of Agricultural and Food Chemistry, 72, 2943-2962, 2024. DOI: 10.1021/acs.jafc.3c06225

Dominika Krygier, Mikołaj Przybyła, Marcin K. Chmielewski, “Microwave-Dependent Thermo-Release Approach for Oligonucleotides 5′-Phosphorylation”, Organic Letters, 26, 1134-1137, 2024. DOI: 10.1021/acs.orglett.3c03924

Joanna Watral, Dorota Formanowicz, Bartłomiej Perek, Katarzyna Kostka-Jeziorny, Alina Podkowińska, Andrzej Tykarski, Magdalena Łuczak, “Comprehensive proteomics of monocytes indicates oxidative imbalance functionally related to inflammatory response in chronic kidney disease-related atherosclerosis”, Frontiers in Molecular Biosciences, 11, art. nr 1229648, 2024. DOI: 10.3389/fmolb.2024.1229648

Anna Wojakowska, Łukasz Marczak, Marcin Zeman, Mykola Chekan, Ewa Zembala-Nożyńska, Krzysztof Polański, Aleksander Strugała, Piotr Widlak, Monika Pietrowska, “Proteomic and metabolomic signatures of rectal tumor discriminate patients with different responses to preoperative radiotherapy”, Frontiers in Oncology, 14, art. nr 1323961, 2024. DOI: 10.3389/fonc.2024.1323961

Joanna I. Loch, Anna Ściuk, Marta Kilichowska, Izabela Pieróg, Weronika Łukaszczyk, Katarzyna Zimowska, Mariusz Jaskólski, “Probing the enzymatic activity and maturation process of the EcAIII Ntn-amidohydrolase using local random mutagenesis”, Acta Biochemica Polonica, 71, art. nr 12299, 2024. DOI: 10.3389/abp.2024.12299

T. Krępski, A. Piasecka, M. Święcicka, M. Kańczurzewska, A. Sawikowska, M. Dmochowska-Boguta, M. Rakoczy-Trojanowska, M. Matuszkiewicz, “Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels”, BMC Plant Biology, 24, art. nr 107, 2024. DOI: 10.1186/s12870-024-04726-0

Monika Stachowiak, Joanna Nowacka-Woszuk, Alicja Szabelska-Beresewicz, Joanna Zyprych-Walczak, Paulina Krzemińska, Oskar Sosiński, Tomasz Nowak, Marek Świtoński, “A massive alteration of gene expression in undescended testicles of dogs and the association of KAT6A variants with cryptorchidism”, Proceedings of the National Academy of Sciences of the United States of America, 121, art. nr e2312724121, 2024. DOI: 10.1073/pnas.2312724121

Maciej Pawlak, Joanna Wałecka, Paweł Bąkowski, Agata Tyczewska, Kamilla Grzywacz, “Biologiczne wspomaganie leczenia ortopedycznego”, Postępy Biochemii, 69, 310-318, 2024. DOI: 10.18388/pb.2021_505

Joanna Śliwiak, Paulina Worsztynowicz, Kinga Pokrywka, Joanna I. Loch, Marta Grzechowiak, Mariusz Jaskólski, “Biochemical characterization of L-asparaginase isoforms from Rhizobium etli—the boosting effect of zinc”, Frontiers in Chemistry, 12, art. nr 1373312, 2024. DOI: 10.3389/fchem.2024.1373312

Adam A. Mieloch, Anna M. Mleczko, Anna Samelak-Czajka, Paulina Jackowiak, Jakub D. Rybka, “Biomimetic virus-like particles with magnetic core. From bioactivity to an immunodiagnostic tool”, Chemical Engineering Journal, 485, art. nr 149714, 2024. DOI: 10.1016/j.cej.2024.149714

Ewa Totoń, Natalia Lisiak, Aleksandra Romaniuk-Drapała, Grzegorz Framski, Eliza Wyszko, Tomasz Ostrowski, “Cytotoxic effects of kinetin riboside and its selected analogues on cancer cell lines”, Bioorganic & Medicinal Chemistry Letters, 100, art. nr 129628, 2024. DOI: 10.1016/j.bmcl.2024.129628

Małgorzata Wojtkowska, Natalia Karczewska, Klaudia Pacewicz, Andrzej Pacak, Piot Kopeć, Jolanta Florczak-Wyspiańska, Karolina Popławska-Domaszewicz, Tomasz Małkiewicz, Bartosz Sokół, Tomasz Małkiewicz, Bartosz Sokół, “Quantification of Circulating Cell-Free DNA in Idiopathic Parkinson’s Disease Patients”, International Journal of Molecular Sciences, 25, art. nr 2818, 2024. DOI: 10.3390/ijms25052818

Karolina Zimmer, Alicja M. Chmielewska, Paulina Jackowiak, Marek Figlerowicz, Krystyna Bienkowska-Szewczyk, “Alterations in N-glycosylation of HCV E2 Protein in Children Patients with IFN-RBV Therapy Failure”, Pathogens, 13, art. nr 256, 2024. DOI: 10.3390/pathogens13030256

Wojciech Witek, Joanna Śliwiak, Michał Rawski, Miłosz Ruszkowski, “ Targeting imidazole-glycerol phosphate dehydratase in plants: novel approach for structural and functional studies, and inhibitor blueprinting”, Frontiers in Plant Science, 15, art. nr 1343980, 2024. DOI: 10.3389/fpls.2024.1343980

Anna M. Majewska, Mariola A. Dietrich, Lucyna Budźko, Mikołaj Adamek, Marek Figlerowicz, Andrzej Ciereszko, “Secreted novel AID/APOBEC-like deaminase 1 (SNAD1) – a new important player in fish immunology”, Frontiers in Immunology, 15, art. nr 1340273, 2024. DOI: 10.3389/fimmu.2024.1340273

Natalia Szóstak, Luiza Handschuh, Anna Samelak-Czajka, Katarzyna Tomela, Bernadeta Pietrzak, Marcin Schmidt, Łukasz Galus, Jacek Mackiewicz, Andrzej Mackiewicz, Piotr Kozłowski, Anna Philips, “Gut Mycobiota Dysbiosis Is Associated with Melanoma and Response to Anti–PD-1 Therapy”, Cancer Immunology Research, 12, 427-439, 2024. DOI: 10.1158/2326-6066.CIR-23-0592

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