Publikacje ICHB PAN

Link do zestawienia wszystkich publikacji ICHB PAN w bazie Web of Science

2024

Sofiia Baranykova, Rishikesh Kumar Gupta, Arkadiusz Kajdasz, Iga Wasilewska, Matylda Macias, Alesandra Szybińska, Tomasz Węgierski, Karim Abu Nahia, Shamba S. Mondal, Cecila L. Winata, Jacek Kuźnicki, Łukasz Majewski, “Loss of Stim2 in zebrafish induces glaucoma-like phenotype”, Scientific Reports, 14, art. nr 24442, 2024. DOI: 10.1038/s41598-024-74909-0
Maja Szymczak, Marcin Runowski, Dorota Kwiatek, Szymon Sobczak, Przemysław Woźny, Maciej Kubicki, Grzegorz Dutkiewicz, Andrzej Katrusiak, Łukasz Marciniak, “ Multimodal luminescence manometers based on a novel organic complex material – Eu(bpyO2)4(PF6)3”, Journal of Materials Chemistry C, 2024. DOI:10.1039/d4tc03005b
Marta Mackowiak, Bartosz Adamczyk, Marta Szachniuk, Tomasz Zok, “RNAtango: Analysing and comparing RNA 3D structures via torsional angles”, Plos. Computational Biology, 20, art. nr e1012500, 2024. DOI: 10.1371/journal.pcbi.1012500
Yvonne S.L. Choo, Jacek L. Kolanowski, Jovana V. Milić, Fun Man Fung, “The Retrosynthesis Mindset: A Problem-Solving tool”, Synlett, 2024. DOI: 10.1055/s-0043-1775406
Rafał Nowak, Monika Gazecka, Markus Hoffmann, Ryszard Kierzek, Stefan Pöhlmann, Paweł Zmora, TMPRSS2-specific antisense oligonucleotides inhibit host cell entry of emerging viruses, Virology, 600, art. nr 110218, 2024. DOI: 10.1016/j.virol.2024.110218
Agnieszka Piasecka, Michał W. Szcześniak, Michał Sekrecki, Arkadiusz Kajdasz, Łukasz J. Sznajder, Anna Baud, Krzysztof Sobczak, “MBNL splicing factors regulate the microtranscriptome of skeletal muscles”, Nucleic Acids Research, art. nr gkae774, 2024. DOI: 10.1093/nar/gkae774
Anna Maria Barciszewska, Agnieszka Belter, Jakub F. Barciszewski, Iwona Gawrońska, Małgorzata Giel-Pietraszuk, Mirosława Z. Naskręt-Barciszewska, “Mechanistic Insights on Metformin and Arginine Implementation as Repurposed Drugs in Glioblastoma Treatment”, International Journal of Molecular Sciences, 25, art. nr 9460, 2024. DOI: 10.3390/ijms25179460
Maciej Wiesner, Jan Barciszewski, Agnieszka Belter, Andrzej Sierakowski, Adrian Drzazga, Marcin K. Chmielewski, “ Low bias charge transport in DNA”, Scientific Reports, 14, art. nr 22405, 2024. DOI: 10.1038/s41598-024-74133-w
Wojciech Witek, Barbara Imiołczyk, Miłosz Ruszkowski, “Structural, kinetic, and evolutionary peculiarities of HISN3, a plant 5′-ProFAR isomerase”, Plant Physiology and Biochemistry, 215, art. nr 109065, 2024. DOI: 10.1016/j.plaphy.2024.109065
Magdalena Gaweł, Piotr H. Małecki, Joanna Śliwiak,Marlena Stępniewska, Barbara Imiołczyk, Justyna Czyrko-Horczak, Dorota Jakubczyk, Łukasz Marczak, Marta Eliza Płońska-Brzezińska, Krzysztof Brzeziński, “A closer look at molecular mechanisms underlying inhibition of S-adenosyl-l-homocysteine hydrolase by transition metal cations”, Chemical Comminucations, 2024. DOI: 10.1039/d4cc03143a
Joanna Nowak-Karnowska, Agata Głuszyńska, Joanna Kosman, Anna Dembska, “Fluorescence Turn-Off Ligand for Parallel G-Quadruplexes”, Molecules, 29, art. nr 3907, 2024. DOI: 10.3390/molecules29163907
Klaudia Stachowiak, Michał Zabiszak, Jakub Grajewski, Anna Teubert, Anna Bajek, Renata Jastrząb, “Thermodynamic Studies of Complexes in Cu(II)/Uridine-5′-Diphosphoglucuronic Acid System”, Molecules, 29, 3695, 2024. DOI: 10.3390/molecules29153695
Lucyna Stachowiak, Weronika Kraczkowska, Aleksandra Świercz, Paweł Piotr Jagodziński, “Circulating non-coding RNA in type 1 diabetes mellitus as a source of potential biomarkers – An emerging role of sex difference”, Biochemical and Biophysical Research Communications, 736, art. nr 150482, 2024. DOI: 10.1016/j.bbrc.2024.150482
Marta Grzechowiak, Joanna Śliwiak, Andreas Link, Miłosz Ruszkowski, “Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies”, International Journal of Biological Macromolecules, 278, art. nr 134648, 2024. DOI: 10.1016/j.ijbiomac.2024.134648
Agnieszka Fiszer, Emilia Kozłowska, Magdalena Jazurek-Ciesiołka, “From design to cellular processing: Insights into sequencing of vectorized therapeutic small RNAs”, Molecular Therapy Nucleic Acids, 35, art. nr 102277, 2024. DOI: 10.1016/j.omtn.2024.102277
Justyna Gołębiewska, Michał Sobkowski, Jacek Stawiński, “Synthesis of Nucleoside Selenophosphoramidates via H-Phosphonate Intermediates”, Journal of Organic Chemistry, 2024. DOI: 10.1021/acs.joc.4c00770
Satenik Mkrtchyan, Michał Jakubczyk, Sehrish Sarfaraz, Khurshid Ayub, Viktor O. Iaroshenko, “Ru-catalyzed activation of free phenols in a one-step Suzuki–Miyaura cross-coupling under mechanochemical conditions”, Chemical Science, 2024. DOI: 10.1039/D4SC01704H
Michał Budnik, Jakub Wawrzyniak, Łukasz Grala, Miłosz Kadziński, Natalia Szóstak, “Deep dive into RNA: a systematic literature review on RNA structure prediction using machine learning methods”, Artificial Inteligence Review, 57, art. nr 254, 2024. DOI: 10.1007/s10462-024-10910-3
Yao-Wen Sang, Jun-Qiang Wang, Małgorzata Sterna, Jacek Błażewicz, “Single machine scheduling with the total weighted late work and rejection cost”, Naval Research Logistics, 2024. DOI: 10.1002/nav.22222
Julian C.-H. Chen, Mirosław Gilski, Changsoo Chang, Dominika Borek, Gerd Rosenbaum, Alex Lavens, Zbyszek Otwinowski, Maciej Kubicki, Zbigniew Dauter, Mariusz Jaskólski, Andrzej Joachimiak, “Solvent organization in the ultrahigh-resolution crystal structure of crambin at room temperature”, IUCrJ, 11, 649-663, 2024. DOI:10.1107/S2052252524007784
Klaudia Stachowiak, Michał Zabiszak, Jakub Grajewski, Anna Teubert, Anna Bajek, Renata Jastrząb, “Thermodynamic Studies of Complexes in Cu(II)/Uridine-5′-Diphosphoglucuronic Acid System”, Molecules, 29, art. nr 3695, 2024. DOI: 10.3390/molecules29153695
Hanna Fuchs, Aleksandra M. Staszak, Paola A. Vargas, Mariam Sahrawy, Antonio J. Serrato, Marcin K. Dyderski, Ewelina A. Klupczyńska, Paweł Głodowicz, Katarzyna Rolle, Ewelina Ratajczak, “Redox dynamics in seeds of Acer spp: unraveling adaptation strategies of different seed categories”, Frontiers in Plant Science, 15, art. nr 1430695, 2024. DOI: 10.3389/fpls.2024.1430695
A. Wlodawer, Z. Dauter, J. Lubkowski, J.I. Loch, D. Brzeziński, M. Gilski, M. Jaskólski, “Towards a dependable data set of structures for L-asparaginase research”, Acta Crystallographica Section D- Structural Biology, D80, 506-527, 2024. DOI: 10.1107/S2059798324005461
Katarzyna Szafran, Dominik Rafalski, Krzysztof Skowronek, Marek Wojciechowski, Asgar abbas Kazrani, Mirosław Gilski, Shuang-yong Xu, Matthias Bochtler, “Structural analysis of the BisI family of modification dependent restriction endonucleases”, Nucleic Acids Research, 52, 9103-9118, 2024. DOI: 10.1093/nar/gkae634,
Przemysław Biegański, Monika Gazecka, Rafał Nowak, Aleksander Górski, Natalia Dutkiewicz, Daniel Fábio Kawano, Paweł Zmora, Konrad Kowalski, “Organometallic–Erlotinib Conjugates Active against Lung Cancer Cells and as Emerging Virus Entry Inhibitors”, Organometallics, 2024. DOI: 10.1021/acs.organomet.4c00145
Satenik Mkrtchyan, Michał Jakubczyk, Sehrish Sarfaraz, Khurshid Ayub, Vishal B. Purohit, Oleksandr Shalimov, Viktor O. Iaroshenko, “One-step Ru-catalyzed conversion of phenolic OH groups to trifluoromethyl under mechanochemical conditions”, Cell Reports Physical Science, 5, art. nr 102062, 2024. DOI: 10.1016/j.xcrp.2024.102062
Piotr H. Małecki, Georg M. Fassauer, Nicole Rüger, Lukas Schulig, Andreas Link, Oxana Krylova, Udo Heinemann, Manfred S. Weiss, “Structure-based mapping of the histone-binding pocket of KDM4D using functionalized tetrazole and pyridine core compounds”, European Journal of Medicinal Chemistry, 276, art. nr 116642, 2024. DOI: 10.1016/j.ejmech.2024.116642
Agnieszka Baliga-Gil, Marta Soszyńska-Jóźwiak, Agnieszka Ruszkowska, Izabela Szcześniak, Ryszard Kierzek, Maria Ciechanowska, Magdalena Trybus, Paulina Jackowiak, Jake M. Peterson, Walter N. Moss, Elżbieta Kierzek, “Targeting sgRNA N secondary structure as a way of inhibiting SARS-CoV-2 replication”, Antiviral Research, 228, art. nr 105946, 2024. DOI: 10.1016/j.antiviral.2024.105946
Joanna Skiba, Marius Hirschfeld, Heinrich Lang, Damian Trzybiński, Krzysztof Woźniak, Monika Gazecka, Paweł Zmora, Konrad Kowalski, “Click—ferrocenyl nucleotides—synthesis, electrochemistry, and antiproliferative activity studies”, Journal of Organometallic Chemistry, 1016, art. nr 123242, 2024. DOI: 10.1016/j.jorganchem.2024.123242
Agata Głuszyńska, Joanna Kosman, Shang Shiuan Chuah, Marcin Hoffmann, Shozeb Haider, “Carbazole Derivatives Binding to Bcl-2 Promoter Sequence G-quadruplex”, Pharmaceuticals, 17, art. nr 912, 2024. DOI: 10.3390/ph17070912
Sílvia Carbonell-Sala, Tamara Perteghella, Julien Lagarde, Hiromi Nishiyori, Emilio Palumbo, Carme Arnan, Hazuki Takahashi, Piero Carninci, Barbara Uszczyńska-Ratajczak, Roderic Guigó, “CapTrap-seq: a platform-agnostic and quantitative approach for high-fidelity full-length RNA sequencing”, Nature Communications, 15, art. nr 5278, 2024. DOI: 10.1038/s41467-024-49523-3
Luke C. Bartelt, Mouad Fakhri, Grażyna Adamek, Magdalena Trybus, Anna Samelak-Czajka, Paulina Jackowiak, Agnieszka Fiszer, Craig B. Lowe, Albert R. La Spada, Paweł M. Świtoński, “Antibody-assisted selective isolation of Purkinje cell nuclei from mouse cerebellar tissue”, Cell Reports Methods, 4, art. nr 100816, 2024. DOI: 10.1016/j.crmeth.2024.100816
Martyna Kordyś, Anna Urbanowicz, “3D Puzzle at the Nanoscale–How do RNA Viruses Self-Assemble their Capsids into Perfectly Ordered Structures”, Macromolecular Bioscience, 2024. DOI: 10.1002/mabi.202400088
Barbara Mirska, Michał Zeńczak, Katarzyna Nowis, Ireneusz Stolarek, Jan Podkowiński, Magdalena Rakoczy, Małgorzata Marcinkowska-Swojak, Natalia Koralewska, Paweł Zmora, Elżbieta Lenartowicz Onyekaa, Marcin Osuch, Katarzyna Łasińska, Jadwiga Kuczma-Napierała, Marcelina Jaworska, Łukasz Madej, Marzena Ciechomska, Aleksander Jamsheer, Krzysztof Kurowski, Marek Figlerowicz, Luiza Handschuh, “The landscape of the COVID-19 pandemic in Poland emerging from epidemiological and genomic data”, Scientific Reports, 14, art. nr 14416, 2024. DOI: 10.1038/s41598-024-65468-5
Klementyna Marciniak, Agata Tyczewska, Kamilla Grzywacz, “Genetics of antibiotic resistance in methicillin-resistant Staphylococcus aureus (MRSA)”, BioTechnologia, 105, 169-177, 2024. DOI: 10.5114/bta.2024.139756h
Martyna Kordyś, Anna Urbanowicz, “3D Puzzle at the Nanoscale–How do RNA Viruses Self-Assemble their Capsids into Perfectly Ordered Structures”, Macromolecular Bioscience, art. nr 2400088, 2024. DOI: 10.1002/mabi.202400088
Angelika Andrzejewska-Romanowska, Julita Gumna, Ewa Tykwińska, Katarzyna Pachulska-Wieczorek, “Mapping the structural landscape of the yeast Ty3 retrotransposon RNA genome”, Nucleic Acids Research, art. nr gkae494, 2024. DOI: 10.1093/nar/gkae494
Julian Zacharjasz, Marta Sztachera, Michał Smuszkiewicz, Monika Piwecka, “Micromanaging the neuroendocrine system – A review on miR-7 and the other physiologically relevant miRNAs in the hypothalamic–pituitary axis”, Febs Letters, 2024. DOI: 10.1002/1873-3468.14948
Mariia Dekaliuk, Zdeněk Farka, Niko Hildebrandt, “The pros and cons of nucleic acid-amplified immunoassays—a comparative study on the quantitation of prostate-specific antigen with and without rolling circle amplification”, Analytical and Bioanalytical Chemistry, 2024. DOI: 10.1007/s00216-024-05357-y
Irena Bak-Sypien, Tomasz Pawlak, Piotr Paluch, Aneta Wróblewska, Rafał Dolot, Aleksandra Pawłowicz, Małgorzata Szczesio, Ewelina Wielgus, Sławomir Kaźmierski, Marcin Górecki, Roza Pawłowska, Arkadiusz Chworos, Marek J. Potrzebowski, “Influence of heterochirality on the structure, dynamics, biological properties of cyclic(PFPF) tetrapeptides obtained by solvent-free ball mill mechanosynthesis”, Scientific Reports, 14, art. nr 12825, 2024. DOI: 10.1038/s41598-024-63552-4
Paweł Głodowicz, Konrad Kuczyński, Romain Val, André Dietrich, Katarzyna Rolle, “Mitochondrial transport of catalytic RNAs and targeting of the organellar transcriptome in human cells”, Journal of Molecular Cell Biology, art. nr mjad051, 2024. DOI: 10.1093/jmcb/mjad051
Cledi A Cerda-Jara, Seung Joon Kim, Gwendolin Thomas, Zohreh Farsi, Grygoriy Zolotarov, Giuliana Dube, Aylina Deter, Ella Bahry, Elisabeth Georgii, Andrew Woehler, Monika Piwecka, Nikolaus Rajewsky, “miR-7 controls glutamatergic transmission and neuronal connectivity in a Cdr1as-dependent manner”, Embo Reports, 2024. DOI: 10.1038/s44319-024-00168-9
Katarzyna Mazur-Malewska, Magdalena Łuczak, Joanna Watral, Paweł Małecki, Anna Mania, Magdalena Figlerowicz,
“The Impact of Acute EBV Infection on Changes in the Serum Proteome in Children—A Pilot Study”, Pathogens, 13, art. nr 471, 2024. DOI: 10.3390/pathogens13060471
Urszula Kazimierczak, Anna Przybyła, Marianna Smielowska, Tomasz Kolenda, Andrzej Mackiewicz, “Targeting the Hippo Pathway in Cutaneous Melanoma”, Cells,
13, art. nr 1062, 2024. DOI: 10.3390/cells13121062
Piotr J. Pietras, Anna Wasilewska-Burczyk, Kamila Pepłowska, Łukasz Marczak, Agata Tyczewska, Kamilla Grzywacz, “Dynamic protein composition of Saccharomyces cerevisiae ribosomes in response to multiple stress conditions reflects alterations in translation activity”, International Journal of Biological Macromolecules, 268, art. nr 132004, 2024. DOI: 10.1016/j.ijbiomac.2024.132004
Julia Wieruszewska, Aleksandra Pawłowicz, Ewa Połomska, Karol Pasternak, Zofia Gdaniec, Witold Andrałojć, “The 8-17 DNAzyme can operate in a single active structure regardless of metal ion cofactor”, Nature Communications, 15, art. nr 4218, 2024. DOI: 10.1038/s41467-024-48638-x
Marek Kazimierczyk, Agnieszka Fedoruk-Wyszomirska, Dorota Gurda-Woźna, Eliza Wyszko, Agata Świątkowska, Jan Wrzesiński, “The expression profiles of piRNAs and their interacting Piwi proteins in cellular model of renal development: Focus on Piwil1 in mitosis”, European Journal of Cell Biology, 103, art. nr 151444, 2024. DOI: 10.1016/j.ejcb.2024.151444
Paweł Wojciechowski, Marta Kasprzak, “Assignment of Tasks to Machines Under Data Replication with a Tie to Steiner Systems”, International Journal of Applied Mathematics and Computer Science, 34, 263-275, 2024. DOI: 10.61822/amcs-2024-0019
Leszek Błaszczyk, Marcin Ryczek, Bimolendu Das, Martyna Mateja-Pluta, Magdalena Bejger, Joanna Śliwiak, Kazuhiko Nakatani, Agnieszka Kiliszek, “Antisense RNA C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms a triplex-like structure and binds small synthetic ligand”, Nucleic Acids Research, art. nr gkae376, 2024. DOI: 10.1093/nar/gkae376
Hieronim Jakubowski, Marta Sikora, Ewa Bretes, Joanna Perła-Kaján, Olga Utyro, Izabela Wojtasz, Radosław Kaźmierski, Marcin Frankowski, Anetta Zioła-Frankowska, “Association of Metallic and Nonmetallic Elements with Fibrin Clot Properties and Ischemic Stroke”, Life, 16, art. nr 634, 2024. DOI: 10.3390/life14050634
Anna Ściuk, Kinga Wątor, Izabela Staroń, Paulina Worsztynowicz, Kinga Pokrywka, Joanna Śliwiak, Marta Kilichowska, Kamila Pietruszewska, Zofia Mazurek, Anna Skalniak, Krzysztof Lewandowski, Mariusz Jaskólski, Joanna I. Loch, Marcin Surmiak, “Substrate Affinity Is Not Crucial for Therapeutic L-Asparaginases: Antileukemic Activity of Novel Bacterial Enzymes”, 29, art. nr 2272, 2024. DOI: 10.3390/molecules29102272
Karol Kurpiejewski, Karolina Piecyk, Maciej Łukaszewicz, Karol Kamel, Kazimierz Chmurski, Sebastian Kmiecik, Marzena Jankowska-Anyszka, “The Synergistic Effect of N2 and N7 Modifications on the Inhibitory Efficacy of mRNA Cap Analogues”, Pharmaceuticals, 17, art. nr 632, 2024. DOI: 10.3390/ph17050632
Dagny Lorent, Rafał Nowak, Magdalena Figlerowicz, Luiza Handschuh, Paweł Zmora, “Anti-SARS-CoV-2 Antibodies Level and COVID-19 Vaccine Boosters among Healthcare Workers with the Highest SARS-CoV-2 Infection Risk—Follow Up Study”, Vaccines, 12, art. nr 475, 2024. DOI:
10.3390/vaccines12050475
Nicoletta Makowska-Zawierucha, Artur Trzebny, Krzysztof Zawierucha, Vineeth Manthapuri, James A. Bradley, Amy Pruden, “Arctic plasmidome analysis reveals distinct relationships among associated antimicrobial resistance genes and virulence genes along anthropogenic gradients”, Global Change Biology, 30, art. nr e17293, 2024. DOI: 10.1111/gcb.17293
Natalia Koralewska, Eloina Corradi, Marek C. Milewski, Linda Masante, Agnieszka Szczepańska, Ryszard Kierzek, Marek Figlerowicz, Marie-Laurie Baudet, Anna Kurzyńska-Kokorniak, “Short 2′-O-methyl/LNA oligomers as highly-selective inhibitors of miRNA production in vitro and in vivo”, Nucleic Acids Research, art. nr gkae284, 2024. DOI: 10.1093/nar/gkae284
Klaudia Żebrowska , Małgorzata Grabowska , Emerson Coy , Katarzyna Rolle , Radosław Mrówczyński, Bartosz F. Grześkowiak, “In vitro anticancer activity of melanin-like nanoparticles for multimodal therapy of glioblastoma”, Nanotechnology Reviews, 13, art. nr 20230206, 2024. DOI: 10.1515/ntrev-2023-0206
Alwine Wilkens, Paweł Czerniawski, PawełBednarek, Marta Libik-Konieczny, Kenji Yamada, “ATML1 Regulates the Differentiation of ER Body–Containing Large Pavement Cells in Rosette Leaves of Brassicaceae Plants”, Plant and Cell Physiology, art. nr pcae039, 2024. DOI: 10.1093/pcp/pcae039
Michał Żurkowski, Mateusz Świercz, Filip Woźny, Maciej Antczak, Marta Szachniuk, “RNAhugs web server for customized 3D RNA structure alignment”, Nucleic Acids Research, art. nr gkae259, 2024. DOI: 10.1093/nar/gkae259
Kinga Pokrywka, Marta Grzechowiak, Joanna Śliwiak, Paulina Worsztynowicz, Joanna I. Loch, Miłosz Ruszkowski, Mirosław Gilski, Mariusz Jaskólski, “Probing the active site of Class 3 L-asparaginase by mutagenesis. I. Tinkering with the zinc coordination site of ReAV”, Frontiers in Chemistry, art. nr 1381032, 2024. DOI: 10.3389/fchem.2024.1381032
Jessica M. González-Delgado, Peter M. Thompson, Witold Andrałojć, Zofia Gdaniec, Reza A. Ghiladi, Stefan Franzen, “Comparison of the Backbone Dynamics of Dehaloperoxidase-Hemoglobin Isoenzymes”, Journal of Physical Chemistry B, 128, 3383–3397, 2024. DOI: 10.1021/acs.jpcb.3c07176
Agnieszka Rybarczyk, Dorota Formanowicz, Piotr Formanowicz, “The Role of Macrophage Dynamics in Atherosclerosis Analyzed Using a Petri Net-Based Model”, Applied Sciences-Basel, 14, art. nr 3219, 2024. DOI: 10.3390/app14083219
Piotr Pawlak, Paulina Lipińska, Ewa Sell-Kubiak, Arkadiusz Kajdasz, Natalia Derebecka, Ewelina Warzych, “Energy metabolism disorders during in vitro maturation of bovine cumulus-oocyte complexes interfere with blastocyst quality and metabolism”, Developmental Biology, 509, 51-58, 2024. DOI: 10.1016/j.ydbio.2024.02.004
Anna Niewiadomska-Cimicka, Lorraine Fievet, Magdalena Surdyka, Ewelina Jesion, Céline Keime, Elisabeth Singer, Aurélie Eisenmann, Żaneta Kalinowska-Poska, Hoa Huu Phuc Nguyen, Agnieszka Fiszer, Maciej Figiel, Yvon Trottier, “AAV-Mediated CAG-Targeting Selectively Reduces Polyglutamine-Expanded Protein and Attenuates Disease Phenotypes in a Spinocerebellar Ataxia Mouse Model”, International Journal of Molecular Sciences, 25, art. nr 4354, 2024. DOI: 10.3390/ijms25084354
Flavia Scoyni, Valeriia Sitnikova, Luca Giudice, Paula Korhonen, Davide M. Trevisan, Ana Hernandez de Sande, Mireia Gomez-Budia, Raisa Giniatullina, Irene F. Ugidos, Hiramani Dhungana, Cristiana Pistono, Nea Korvenlaita, Nelli-Noora Välimäki, Salla M. Kangas, Anniina E. Hiltunen, Emma Gribchenko, Minna U. Kaikkonen-Määttä, Jari Koistinaho, Seppo Ylä-Herttuala, Reetta Hinttala, Morten T. Veno, Junyi Su, Markus Stoffel, Anne Schaefer, Nikolaus Rajewsky, Jorgen Kjems, Mary P. Lapierre, Monika Piwecka, Jukka Jolkkonen, Rashid Giniatullin, Thomas B. Hansen, Tarja Malm, “ciRS-7 and miR-7 regulate ischemia-induced neuronal death via glutamatergic signaling”, Cell Reports, 43, art. nr 113862, 2024. DOI: 10.1016/j.celrep.2024.113862
Damian M. Janecki, Raneet Sen, Natalia Szóstak, Arkadiusz Kajdasz, Martyna Kordyś, Kinga Plawgo, Dmytro Pandakov, Anna Philips, Zbigniew Warkocki, “LINE-1 mRNA 3′ end dynamics shape its biology and retrotransposition potential”, Nucleic Acids Research, 52, 3327-3345, 2024. DO: I10.1093/nar/gkad1251
Asli Eşme, Dorota Kwiatek, Zbigniew Hnatejko, “Solvent effects on spectroscopic, electronic, and topological analyses, Hirshfeld surface, ADME, and molecular docking studies on antiviral pyridine carboxamide derivatives”, Journal of Molecular Liquids, 396, 123940, 2024. DOI:10.1016/j.molliq.2023.123940
Malwina Suszyńska, Magdalena Machowska, Eliza Fraszczyk, Maciej Michalczyk, Anna Philips, Paulina Gałka-Marciniak, Piotr Kozłowski, “CMC: Cancer miRNA Census – a list of cancer-related miRNA genes”, Nucleic Acids Research, 52, 1628-1644, 2024. DO: I10.1093/nar/gkae017
Robert Kamieniarz, Michał Szymański, Marcin K. Dyderski, Grzegorz Górecki, Bartłomiej M. Jaśkowski, Maciej Skorupski, Jacek Skubis, Magdalena Woźna-Wysocka, Dariusz Zalewski, “Less and less roe deer in the forest – population and habitat reasons”, Sylwan, 168, 408-422, 2024. DOI: 10.26202/sylwan.2024010
Ewa Totoń, Natalia Lisiak, Aleksandra Romaniuk-Drapała, Grzegorz Framski, Eliza Wyszko, Tomasz Ostrowski, “Cytotoxic effects of kinetin riboside and its selected analogues on cancer cell lines”, Bioorganic & Medicinal Chemistry Letters, 100, art. nr 129628, 2024. DOI: 10.1016/j.bmcl.2024.129628
Katarzyna Sutor-Świeży, Renata Górska, Agnieszka Kumorkiewicz-Jamro, Ewa Dziedzic, Monika Bieniasz, Przemysław Mielczarek, Łukasz Popenda, Karol Pasternak, Małgorzata Tyszka-Czochara, Monika Baj-Krzyworzeka, Monika Stefańska, Przemysław Błyszczuk, and Sławomir Wybraniec, “Basella alba L. (Malabar Spinach) as an Abundant Source of Betacyanins: Identification, Stability, and Bioactivity Studies on Natural and Processed Fruit Pigments”, Journal of Agricultural and Food Chemistry, 72, 2943-2962, 2024. DOI: 10.1021/acs.jafc.3c06225
Dominika Krygier, Mikołaj Przybyła, Marcin K. Chmielewski, “Microwave-Dependent Thermo-Release Approach for Oligonucleotides 5′-Phosphorylation”, Organic Letters, 26, 1134-1137, 2024. DOI: 10.1021/acs.orglett.3c03924
Joanna Watral, Dorota Formanowicz, Bartłomiej Perek, Katarzyna Kostka-Jeziorny, Alina Podkowińska, Andrzej Tykarski, Magdalena Łuczak, “Comprehensive proteomics of monocytes indicates oxidative imbalance functionally related to inflammatory response in chronic kidney disease-related atherosclerosis”, Frontiers in Molecular Biosciences, 11, art. nr 1229648, 2024. DOI: 10.3389/fmolb.2024.1229648
Anna Wojakowska, Łukasz Marczak, Marcin Zeman, Mykola Chekan, Ewa Zembala-Nożyńska, Krzysztof Polański, Aleksander Strugała, Piotr Widlak, Monika Pietrowska, “Proteomic and metabolomic signatures of rectal tumor discriminate patients with different responses to preoperative radiotherapy”, Frontiers in Oncology, 14, art. nr 1323961, 2024. DOI: 10.3389/fonc.2024.1323961
Joanna I. Loch, Anna Ściuk, Marta Kilichowska, Izabela Pieróg, Weronika Łukaszczyk, Katarzyna Zimowska, Mariusz Jaskólski, “Probing the enzymatic activity and maturation process of the EcAIII Ntn-amidohydrolase using local random mutagenesis”, Acta Biochemica Polonica, 71, art. nr 12299, 2024. DOI: 10.3389/abp.2024.12299
T. Krępski, A. Piasecka, M. Święcicka, M. Kańczurzewska, A. Sawikowska, M. Dmochowska-Boguta, M. Rakoczy-Trojanowska, M. Matuszkiewicz, “Leaf rust (Puccinia recondita f. sp. secalis) triggers substantial changes in rye (Secale cereale L.) at the transcriptome and metabolome levels”, BMC Plant Biology, 24, art. nr 107, 2024. DOI: 10.1186/s12870-024-04726-0
Monika Stachowiak, Joanna Nowacka-Woszuk, Alicja Szabelska-Beresewicz, Joanna Zyprych-Walczak, Paulina Krzemińska, Oskar Sosiński, Tomasz Nowak, Marek Świtoński, “A massive alteration of gene expression in undescended testicles of dogs and the association of KAT6A variants with cryptorchidism”, Proceedings of the National Academy of Sciences of the United States of America, 121, art. nr e2312724121, 2024. DOI: 10.1073/pnas.2312724121
Maciej Pawlak, Joanna Wałecka, Paweł Bąkowski, Agata Tyczewska, Kamilla Grzywacz, “Biologiczne wspomaganie leczenia ortopedycznego”, Postępy Biochemii, 69, 310-318, 2024. DOI: 10.18388/pb.2021_505
Joanna Śliwiak, Paulina Worsztynowicz, Kinga Pokrywka, Joanna I. Loch, Marta Grzechowiak, Mariusz Jaskólski, “Biochemical characterization of L-asparaginase isoforms from Rhizobium etli—the boosting effect of zinc”, Frontiers in Chemistry, 12, art. nr 1373312, 2024. DOI: 10.3389/fchem.2024.1373312
Adam A. Mieloch, Anna M. Mleczko, Anna Samelak-Czajka, Paulina Jackowiak, Jakub D. Rybka, “Biomimetic virus-like particles with magnetic core. From bioactivity to an immunodiagnostic tool”, Chemical Engineering Journal, 485, art. nr 149714, 2024. DOI: 10.1016/j.cej.2024.149714
Ewa Totoń, Natalia Lisiak, Aleksandra Romaniuk-Drapała, Grzegorz Framski, Eliza Wyszko, Tomasz Ostrowski, “Cytotoxic effects of kinetin riboside and its selected analogues on cancer cell lines”, Bioorganic & Medicinal Chemistry Letters, 100, art. nr 129628, 2024. DOI: 10.1016/j.bmcl.2024.129628
Małgorzata Wojtkowska, Natalia Karczewska, Klaudia Pacewicz, Andrzej Pacak, Piot Kopeć, Jolanta Florczak-Wyspiańska, Karolina Popławska-Domaszewicz, Tomasz Małkiewicz, Bartosz Sokół, Tomasz Małkiewicz, Bartosz Sokół, “Quantification of Circulating Cell-Free DNA in Idiopathic Parkinson’s Disease Patients”, International Journal of Molecular Sciences, 25, art. nr 2818, 2024. DOI: 10.3390/ijms25052818
Karolina Zimmer, Alicja M. Chmielewska, Paulina Jackowiak, Marek Figlerowicz, Krystyna Bienkowska-Szewczyk, “Alterations in N-glycosylation of HCV E2 Protein in Children Patients with IFN-RBV Therapy Failure”, Pathogens, 13, art. nr 256, 2024. DOI: 10.3390/pathogens13030256
Wojciech Witek, Joanna Śliwiak, Michał Rawski, Miłosz Ruszkowski, “ Targeting imidazole-glycerol phosphate dehydratase in plants: novel approach for structural and functional studies, and inhibitor blueprinting”, Frontiers in Plant Science, 15, art. nr 1343980, 2024. DOI: 10.3389/fpls.2024.1343980
Anna M. Majewska, Mariola A. Dietrich, Lucyna Budźko, Mikołaj Adamek, Marek Figlerowicz, Andrzej Ciereszko, “Secreted novel AID/APOBEC-like deaminase 1 (SNAD1) – a new important player in fish immunology”, Frontiers in Immunology, 15, art. nr 1340273, 2024. DOI: 10.3389/fimmu.2024.1340273
Natalia Szóstak, Luiza Handschuh, Anna Samelak-Czajka, Katarzyna Tomela, Bernadeta Pietrzak, Marcin Schmidt, Łukasz Galus, Jacek Mackiewicz, Andrzej Mackiewicz, Piotr Kozłowski, Anna Philips, “Gut Mycobiota Dysbiosis Is Associated with Melanoma and Response to Anti–PD-1 Therapy”, Cancer Immunology Research, 12, 427-439, 2024. DOI: 10.1158/2326-6066.CIR-23-0592

2023

Paweł Śledziński, Agnieszka Nowak-Terpiłowska, Piotr Rzymski, Ryszard Słomski, Joanna Zeyland, “In Vitro Evidence of Selective Pro-Apoptotic Action of the Pure Cannabidiol and Cannabidiol-Rich Extract”, Molecules, 28, art nr 7887, 2023. DOI: 10.3390/molecules28237887
Lucyna Budźko, Karolina Hoffa-Sobiech, Paulina Jackowiak, Marek Figlerowicz, Engineered deaminases as a key component of DNA and RNA editing tools, Molecular Therapy. Nucleic Acids, 34, art nr 102062, 2023. DOI: 10.1016/j.omtn.2023.102062
Sebastian Rykowski, Dorota Gurda-Woźna, Agnieszka Fedoruk-Wyszomirska, Marta Orlicka-Płocka, Aleksandra Kowalczyk, Paweł Stączek, Marta Denel-Bobrowska, Katarzyna Biniek-Antosiak, Wojciech Rypniewski, Eliza Wyszko, Agnieszka B. Olejniczak, “Carboranyl-1,8-naphthalimide intercalators induce lysosomal membrane permeabilization and ferroptosis in cancer cell lines”, Journal of Enzyme Inhibition and Medicinal Chemistry, 38, art nr 2171028, 2023. DOI: 10.1080/14756366.2023.2171028
Natalia Szóstak, Marek Figlerowicz, Anna Philips, “The emerging role of the gut mycobiome in liver diseases”, Gut Microbes, 15, art nr 2211922, 2023. DOI: 10.1080/19490976.2023.2211922
Karolina Kułak, Natalia Wojciechowska, Anna Samelak-Czajka, Paulina Jackowiak, Agnieszka Bagniewska-Zadworna, “How to explore what is hidden? A review of techniques for vascular tissue expression profile analysis”, Plant Methods, 19, art nr 129, 2023. DOI:10.1186/s13007-023-01109-8
Nivedita Dutta, Joanna Sarzyńska, Indrajit Deb, Ansuman Lahiri, “Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes”, Physical Chemistry Chemical Physics, 26, 992-999, 2023. DOI: 10.1039/D3CP02442C
Aitana Neves, Isabel Cuesta, Erik Hjerde, Terje Klemetsen, David Salgado, Jacques van Helden, Nadim Rahman, Nazeefa Fatima, Nestoras Karathanasis, Paweł Zmora, Wolmar Nyberg Åkerström, Sushma Nagaraja Grellscheid, Zahra Waheed, Niklas Blomberg, “FAIR+E pathogen data for surveillance and research: lessons from COVID-19”, Frontiers in Public Health, 11, art nr 1289945, 2023. DOI: 10.3389/fpubh.2023.1289945
Agnieszka Żmieńko, Paweł Wojciechowski, Marek Figlerowicz, “Editorial: Resolving the complexity of plant genomes and transcriptomes with long reads, volume II”, Frontiers in Plant Science, 14, 2023. DOI: 10.3389/fpls.2023.1326500
Jagoda Litowczenko, Jacek K. Wychowaniec, Karol Załęski, Łukasz Marczak, Charlotte J.C. Edwards-Gayle, Krzysztof Tadyszak, Barbara M. Maciejewska, “Micro/nano-patterns for enhancing differentiation of human neural stem cells and fabrication of nerve conduits via soft lithography and 3D printing”, Biomaterial Advances, 154, art nr 213653, 2023. DOI:10.1016/j.bioadv.2023.213653
Marta Kazimierska, Marta Podralska, Magdalena Żurawek, Tomasz Woźniak, Marta Elżbieta Kasprzyk, Weronika Sura, Wojciech Łosiewski, Iwona Ziółkowska-Suchanek, Joost Kluiver, Anke van den Berg, Natalia Rozwadowska, Agnieszka Dzikiewicz-Krawczyk, “CRISPR/Cas9 screen for genome-wide interrogation of essential MYC-bound E-boxes in cancer cells”, Molecular Oncology, 17, 2295-2313, 2023. DOI:10.1002/1878-0261.13493
Anna Syguda, Łukasz Ławniczak, Patrycja Wróbel, Filip Walkiewicz, Grzegorz Framski, Anna Parus, Marta Woźniak-Karczewska, Michał Niemczak, Aleksandra Gierka, Łukasz Chrzanowski, “Biodegradable amidequats, derivatives of caprylic and pelargonic acids as
cationic surfactants for agricultural applications”, Journal of Molecular Liquids, 391, art nr
123221, 2023. DOI: 10.1016/j.molliq.2023.123221
A. Pyrih, A. Łapiński, S. Zięba, A. Mizera, R. Lesyk, A. K. Gzella, M. Jaskólski, “Proton tautomerism and stereoisomerism in 5-[(dimethylamino)methylidene] -4-[3/4-(trifluoromethylphenyl)amino] -1,3-thiazol -2(5H)-ones: synthesis, crystal structure and spectroscopic studies”, Acta Crystallographica. Section C- Structural Chemistry, C79, 480-490, 2023. DOI: 10.1107/S2053229623009087
Katarzyna Taylor, Agnieszka Piasecka, Arkadiusz Kajdasz, Aleksandra Brzęk, Micaela Polay Espinoza, Cyril F. Bourgeois, Artur Jankowski, Małgorzata Borowiak, Katarzyna D. Raczyńska, Łukasz J. Sznajder Krzysztof Sobczak, ” Modulatory role of RNA helicases in
MBNL-dependent alternative splicing regulation”, Cellular and Molecular Life Sciences, 80, art nr 335, 2023. DOI: 10.1007/s00018-023-04927-0
Carolina Roxo, Karolina Zielińska, Anna Pasternak, “Bispecific G-quadruplexes a inhibitors of cancer cells growth”, Biochimie, 214, 91-100, 2023. DOI:10.1016/j.biochi.2023.08.008
Agnieszka Potęga, Dominika Rafalska, Dawid Kazimierczyk, Michał Kosno, Aleksandra Pawłowicz, Witold Andrałojć, Ewa Paluszkiewicz, Tomasz Laskowski, “In Vitro Enzyme Kinetics and NMR-Based Product Elucidation for Glutathione S-Conjugation of the Anticancer Unsymmetrical Bisacridine C-2028 in Liver Microsomes and Cytosol: Major Role of Glutathione S-Transferase M1-1 Isoenzyme”, Molecules, 28, art. nr 6812, 2023. DOI:10.3390/molecules28196812
Andrii Pyrih, Andrzej Łapiński, Sylwia Zięba, Adam Mizera, Roman Lesyk, Andrzej K. Gzella, Mariusz Jaskólski, “Proton tautomerism and stereoisomerism in isomeric 4-(metoxyphenyl)amino-1,3-thiazol-2(5H)-one derivatives: Synthesis, crystal structure and spectroscopic studies”, Journal of Molecular Structure, 1295, art. nr 136748, 2023. DOI:10.1016/j.molstruc.2023.136748
Dagmara Pietkiewicz, Mikołaj Piotr Zaborowski, Kamila Jaz, Eliza Matuszewska, Agata Światły-Błaszkiewicz, Tomasz Kluz, Zenon J. Kokot, Ewa Nowak-Markwitz, Jan Matysiak, “Serum Proteomic Profiles of Patients with High and Low Risk of Endometrial Cancer Recurrence”, 24, art. nr 14528, 2023. DOI: 10.3390/ijms241914528
Bohdan Schneider, Blake A. Sweeney, Alex Bateman, Jiri Cerny, Tomasz Zok, Marta Szachniuk, “When will RNA get its AlphaFold moment?”, Nucleic Acids Research, 51, 9522-9532, 2023. DOI: 10.1093/nar/gkad726
Prayas Chakrabarty, Raneet Sen, Sugopa Sengupta, “From parasites to partners: exploring the intricacies of host-transposon dynamics and coevolution”, Functional & Integrative Genomics, 23, art nr 278, 2023. DOI: 10.1007/s10142-023-01206-w
Kamila Jaz, Cezary Miedziarek, Ewa Piasek, Artur Florek, Ewa Nowak-Markwitz, Mikołaj Piotr Zaborowski, „Choriocarcinoma complicated with intra-abdominal and intrapleural hemorrhage in pregnancy – case report”, Frontiers in Oncology, 13, art. nr 1198553, 2023. DOI: 10.3389/fonc.2023.1198553
Amin Haghani, Caesar Z. Li, Todd R. Robeck, Joshua Zhang, Ake T. Lu, Julia Ablaeva, Victoria A. Acosta-Rodríguez, Danielle M, Abdulaziz N. Alagaili, Javier Almunia, Ajoy Aloysius, Nabil M.S. Amor, Reza Ardehali, Adriana Arneson, C. Scott Baker, Gareth Banks, Katherine Belov,
Nigel C. Bennett, Peter Black, Daniel T. Blumstein, Eleanor K. Bors, Charles E. Breeze, Robert T. Brooke, Janine L. Brown, Gerald Carter, Alex Caulton, Julie M. Cavin, Lisa Chakrabarti, Ioulia Chatzistamou, Andreas S. Chavez, Hao Chen, Kaiyang Cheng, Priscila Chiavellini, Oi-Wa Choi, Shannon Clarke, Joseph A. Cook, Lisa N. Cooper, Marie-Laurence Cossette, Joanna Day, Joseph DeYoung, Stacy Dirocco, Christopher Dold, Jonathan L. Dunnum, Erin E. Ehmke, Candice K. Emmons, Stephan Emmrich, Ebru Erbay, Claire Erlacher-Reid, Chris G. Faulkes, Zhe Fei, Steven H. Ferguson, Carrie J. Finno, Jennifer E. Flower, Jean-Michel Gaillard, Eva Garde, Livia Gerber, Vadim N. Gladyshev, Rodolfo G. Goya, Matthew J Grant, Carla B. Green, M. Bradley Hanson, Daniel W. Hart, Martin Haulena, Kelsey Herrick, Andrew N. Hogan, Carolyn J. Hogg, Timothy A. Hore, Taosheng Huang, Juan Carlos Izpisua Belmonte, Anna J. Jasińska, Gareth Jones, Eve Jourdain, Olga Kashpur, Harold Katcher, Etsuko Katsumata, Vimala Kaza, Hippokratis Kiaris, Michael S. Kobor Pawel Kordowitzki, William R. Koski, Michael Krützen, Soo Bin Kwon, Brenda Larison, Sang-Goo Lee, Marianne Lehmann, Jean-François Lemaître, Andrew J. Levine, Xinmin Li, Cun Li, Andrea R. Lim, David T. S. Lin, Dana M. Lindemann, Schuyler W. Liphardt, Thomas J. Little, Nicholas Macoretta, Dewey Maddox, Craig O. Matkin, Julie A. Mattison, Matthew McClure, June Mergl, Jennifer J. Meudt, Gisele A. Montano, Khyobeni Mozhui, Jason Munshi-South, William J. Murphy, Asieh Naderi, Martina Nagy, Pritika Narayan, Peter W. Nathanielsz, Ngoc B. Nguyen, Christof Niehrs, Batsaikhan Nyamsuren, Justine K. O’Brien, Perrie O’Tierney Ginn, Duncan T Odom, Alexander G. Ophir, Steve Osborn, Elaine A. Ostrander, Kim M. Parsons, Kimberly C. Paul, Amy B. Pedersen, Matteo Pellegrini, Katharina J. Peters, Jessica L. Petersen, Darren W. Pietersen, Gabriela M. Pinho Jocelyn Plassais, Jesse R. Poganik, Natalia A. Prado, Pradeep Reddy, Benjamin Rey, Beate R. Ritz, Jooke Robbins, Magdalena Rodriguez, Jennifer Russell, Elena Rydkina, Lindsay L. Sailer, Adam B. Salmon, Akshay Sanghavi, Kyle M. Schachtschneider, Dennis Schmitt, Todd Schmitt, Lars Schomacher, Lawrence B. Schook, Karen E. Sears, Ashley W. Seifert, Aaron B.A. Shafer, Anastasia V. Shindyapina, Melanie Simmons, Kavita Singh, Ishani Sinha, Jesse Slone, Russel G. Snell, Elham Soltanmohammadi, Matthew L. Spangler, Maria Spriggs, Lydia Staggs, Nancy Stedman, Karen J. Steinman, Donald T Stewart, Victoria J. Sugrue,
Balazs Szladovits, Joseph S. Takahashi, Masaki Takasugi, Emma C. Teeling, Michael J. Thompson, Bill Van Bonn, Sonja C. Vernes, Diego Villar, Harry V. Vinters, Ha Vu, Mary C. Wallingford, Nan Wang, Gerald S. Wilkinson, Robert W. Williams, Qi Yan, Mingjia Yao, Brent G. Young, Bohan Zhang, Zhihui Zhang, Yang Zhao, Peng Zhao, Wanding Zhou, Joseph A. Zoller, Jason Ernst, Andrei Seluanov, Vera Gorbunova, X. William Yang, Ken Raj, Steve Horvath, “DNA methylation networks underlying mammalian traits”, Science, 381, 647,
2023. DOI: 10.1126/science.abq5693
Kamila Jaz, Cezary Miedziarek, Ewa Piasek, Artur Florek, Ewa Nowak-Markwitz, Mikołaj Piotr Zaborowski, “Choriocarcinoma complicated with intra-abdominal and intrapleural hemorrhage in pregnancy – case report”, Frontiers in Oncology, 13, 2023. DOI:10.3389/fonc.2023.1198553
Francisco Carrascoza, Piotr Łukasiak, Wiesław Nowak, Jacek Błażewicz, “Ab Initio Study of Glycine Formation in the Condensed Phase: Carbon Monoxide, Formaldimine, and Water Are Enough”, Astrophysical Journal, 956, art. nr 140, 2023. DOI: 10.3847/1538-4357/acea5b
Jolanta Brzezińska, Stanisław Trzciński, Joanna Strzelec, Marcin K. Chmielewski, „From CPG to hybrid support: Review on the approaches in nucleic acids synthesis in various media”, Bioorganic Chemistry, 140, art. nr 106806, 2023. DOI:10.1016/j.bioorg.2023.106806
Natalia Iżycka, Mikołaj Piotr Zaborowski, Łukasz Ciecierski, Kamila Jaz, Sebastian Szubert, Cezary Miedziarek, Marta Rezler, Kinga Piątek-Bajan, Aneta Synakiewicz, Anna Jankowska, Marek Figlerowicz, Karolina Sterzyńska, Ewa Nowak-Markwitz, „Cancer Stem Cell Markers Clinical Relevance and Prognostic Value in High-Grade Serous Ovarian Cancer (HGSOC) Based on The Cancer Genome Atlas Analysis”, International Journal of Molecular Sciences, 24, art. nr 12746, 2023. DOI: 10.3390/ijms241612746
Joanna I. Loch, Paulina Worsztynowicz, Joanna Śliwiak, Marta Grzechowiak, Barbara Imiołczyk, Kinga Pokrywka, Mateusz Chwastyk, Mirosław Gilski, Mariusz Jaskólski, “Rhizobium etli has two L-asparaginases with low sequence identity but similar structure
and catalytic center”, Acta Crystallographica Section D-Structural Biology, D79, 775-791, 2023. DOI: 10.1107/S2059798323005648
Monika Gazecka, Jakub Śnieżek, Krzysztof Maciołek, Arleta Kowala-Piaskowska, Paweł Zmora, “Mpox virus detection in the wastewater and the number of hospitalized patients in the Poznan metropolitan area, Poland”, International Journal of Infectious Diseases, 133, 75-77, 2023. DOI: 10.1016/j.ijid.2023.05.014
Anna Golczak, Dorota Prukała, Ewa Sikorska, Mateusz Gierszewski, Volodymyr Cherkas, Dorota Kwiatek, Adam Kubiak, Naisargi Varma, Tomasz Pędziński, Shaun Murphree, Radek Cibulka, Lucyna Mrówczyńska, Jacek Łukasz Kolanowski, Marek Sikorski, „Tetramethylalloxazines as efficient singlet oxygen photosensitizers and potential redox-sensitive agents”,Scientific Reports, art. nr 13426,2023. DOI: 10.1038/s41598-023-40536-4
Marta Grzechowiak, Joanna Śliwiak, Mariusz Jaskólski, Miłosz Ruszkowski, „Structural and functional studies of Arabidopsis thaliana glutamate dehydrogenase isoform 2 demonstrate enzyme dynamics and identify its calcium binding site”, Plant Physiology and Biochemistry, 201, art. nr 107895, 2023. DOI: 10.1016/j.plaphy.2023.107895
Ireneusz Stolarek, Michał Zeńczak, Luiza Handschuh, Anna Juras, Małgorzata Marcinkowska-Swojak, Anna Spinek, Artur Dębski, Marzena Matla, Hanna Kóčka-Krenz, Janusz Piontek, Polish Archaeogenomics Consortium Team, Marek Figlerowicz, „Genetic history of East-Central Europe in the first millennium CE”, Genome Biology, 24, art. nr 173, 2023. DOI: 10.1186/s13059-023-03013-9
Agnieszka Hryniewiecka, Joanna Breczko, Gabriela Siemaszko, Anthony N. Papathanassiou, Kinga Góra-Marek, Karolina A. Tarach, Krzysztof Brzezinski, Anna Ilnicka, Artur P. Terzyk, Karolina H. Markiewicz, Luis Echegoyen, Marta E. Płońska-Brzezińska, „Three-dimensional organization of pyrrolo[3,2-b]pyrrole-based triazine framework using nanostructural spherical carbon: enhancing electrochemical performance of materials for supercapacitors”, Scientific Reports, 12, art. nr 10737, 2023. DOI: 10.1038/s41598-023-37708-7
Anna Samelak-Czajka, Paweł Wojciechowski, Małgorzata Marszałek-Zeńczak, Marek Figlerowicz, Agnieszka Żmieńko, „Differences in the intraspecies copy number variation of Arabidopsis thaliana conserved and nonconserved miRNA genes”, Functional & Integrative Genomics, 23, art. nr 120, 2023. DOI: 10.1007/s10142-023-01043-x
Satenik Mkrtchyan, Michał Jakubczyk, Šimon Budzák, Barbora Benická, Viktor O. Iaroshenko, „Introducing Trifluoromethoxyarenes as Halide Surrogates in Mechanochemical Realizations of Ni-catalyzed Cross-coupling Reactions”, Asian Journal of Organic Chemistry, 12, 2023. DOI: 10.1093/nar/gkad346
Monika Piwecka, Nikolaus Rajewsky, Agnieszka Rybak-Wolf, „Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease”, Nature Reviews Neurology, 19, 346-362, 2023. DOI: 10.1038/s41582-023-00809-y
Praveen Awasthi, Ajay Kumar Mishra, Tomáš Kocábek, Vishnu Sukumari Nath, Sagarika Mishra, Khaled M. Hazzouri, Naganeeswaran Sudalaimuthuasari, Natasa Stajner, Jernej Jakše, Karel Krofta, Tomáš Hájek, Khaled MA. Amiri, „CRISPR/Cas9-mediated mutagenesis of the mediator complex subunits MED5a and MED5b genes impaired secondary metabolite accumulation in hop (Humulus lupulus)”, Plant Physiology and Biochemistry, 201, art. nr 107851, 2023. DOI: 10.1016/j.plaphy.2023.107851
A. Fiszer, „All roads lead to cure: Diversity of oligonucleotides in DM1 therapy”, Molecular Therapy. Nucleic Acids, 32, 898-899, 2023. DOI: 10.1016/j.omtn.2023.05.012
Monika Piwecka, Raphaelle Luisier, Catia Andreassi, „Editorial: RNA at a breaking point? Cytoplasmic cleavage and other post-transcriptional RNA processing in neurodevelopment and disease”, Frontiers in Molecular Neuroscience, 16, art. nr 1214853, 2023. DOI: 10.3389/fnmol.2023.1214853
A. Pyrih, A. Łapiński, S. Zięba, A. Mizera, R. Lesyk, M. Jaskólski, K. Gzella, „Proton tautomerism in 5-dimethylaminomethylidene -4-(o-,m-,p-hydroxyphenyl)amino -1,3-thiazol -2(5H)-ones: synthesis, crystal structure and spectroscopic studies ”, Acta Crystallographica B- Sctructural Science, Crystal Engineering and Materials, B79, 220-232, 2023. DOI: 10.1107/S2052520623003852
Maciej Janicki, Anna Ściuk, Andrzej Zieleziński, Miłosz Ruszkowski, Agnieszka Ludwików, Wojciech M. Karłowski, Mariusz Jaskólski, Joanna I. Loch, „The effects of nature-inspired amino acid substitutions on structural and biochemical properties of the E. coli L-asparaginase EcAIII”, Protein Science, 32, art. nr e4647, 2023. DOI: /10.1002/pro.4647
Michał Żurkowski, Maciej Antczak, Marta Szachniuk, „High-quality, customizable heuristics for RNA 3D structure alignment”, Bioinformatics, 39, art. nr btad315, 2023. DOI: 10.1093/bioinformatics/btad315
Barbara Mirska, Tomasz Woźniak, Dagny Lorent, Agnieszka Ruszkowska, Jake M. Peterson, Walter N. Moss, David H. Mathews, Ryszard Kierzek, Elżbieta Kierzek, „In vivo secondary structural analysis of Influenza A virus genomic RNA”, Cellular and Molecular Life Sciences, 80, 136, 2023. DOI: 10.1007/s00018-023-04764-1
Bartosz Adamczyk, Michał Żurkowski, Marta Szachniuk, Tomasz Żok, “WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures”, Nucleic Acids Research, 51, W607- W612, 2023. DOI: 10.1093/nar/gkad346
Agnieszka Kiliszek, Wojciech Rypniewski, Leszek Błaszczyk, „Exploring structural determinants and the role of nucleolin in formation of the long-range interactions between untranslated regions of p53 mRNA”, RNA, 29, 630-643, 2023. DOI:10.1261/rna.079378.122
Tomasz Ostrowski, „Bioactive Furanyl- or Thienyl-Substituted Nucleobases, Nucleosides and Their Analogues”, Mini-Reviews in Medicinal Chemistry, 23, 633-650, 2023. DOI:10.2174/1389557522666220812125205
Anna M. Barciszewska, Agnieszka Belter, Iwona Gawrońska, Magłorzata Giel-Pietraszuk, Mirosława Z. Naskręt-Barciszewska, „Juglone in Combination with Temozolomide Shows a Promising Epigenetic Therapeutic Effect on the Glioblastoma Cell Line”, International
Journal of Molecular Sciences, 24, art. nr 6998, 2023. DOI: 10.3390/ijms24086998
Bibek Aryal, Jian Xia, Zehan Hu, Michael Stumpe, Tashi Tsering, Jie Liu, John Huynh, Yoichiro Fukao, Nina Glöckner, Hsin-Yao Huang, Gloria Sáncho-Andrés, Konrad Pakuła, Joerg Ziegler, Karin Gorzolka, Marta Zwiewka, Tomasz Nodzyński, Klaus Harter, Clara Sánchez-Rodríguez, Michał Jasiński, Sabine Rosahl, Markus M. Geisler, „An LRR receptor kinase controls ABC transporter substrate preferences during plant growth-defense decisions”, Current Biology, 33, 2008-2023.e8, 2023. DOI: 10.1016/j.cub.2023.04.029
Aleksandra Marchwicka, Kuba Nowak, Anastasiia Satyr, Dariusz Wołowiec, Ewa Marcinkowska, „Immuno-Stimulating Activity of 1,25-Dihydroxyvitamin D in Blood Cells from Five Healthy People and in Blasts from Five Patients with Leukemias and Pre-Leukemic States”, International JouNowicka-rnal of Molecular Sciences, 24, art. nr 6504, 2023. DOI: 10.3390/ijms24076504
Konrad Pakuła, Carlos Sequeiros-Borja, Wanda Biała-Leonhard, Aleksandra Pawela, Joanna Banasiak, Aurelien Bailly, Marcin Radom, Markus Geisler, Jan Brezovsky, Michał Jasiński, „Restriction of access to the central cavity is a major contributor to substrate
selectivity in plant ABCG transporters”, 80, art. nr 105, 2023. DOI: 10.1007/s00018-023-04751-6
Magdalena Grajzer, Benita Wiatrak, Paulina Jawien, Łukasz Marczak, Anna Wojakowska, Rafał Wiejak, Edward Roj, Wojciech Grzebieluch, Anna Prescha, Evaluation of Recovery Methods for Fragaria vesca L. Oil: Characteristics, Stability and Bioactive Potential, Foods, 12, art. nr 1852, 2023. DOI: 10.3390/foods12091852
Katarzyna Woźniak, Krzysztof Brzeziński, „Biological Catalysis and Information Storage Have Relied on N-Glycosyl Derivatives of β-D-Ribofuranose since the Origins of Life”, Biomolecules, 13, art. nr 782, 2023. DOI: 10.3390/biom13050782
Bartosz Nowak, Emilia Kozłowska, Weronika Pawlik, Agnieszka Fiszer, „Atrophin-1 Function and Dysfunction in Dentatorubral–Pallidoluysian Atrophy”, Movement Disorders, 38, 526-536, 2023. DOI: 10.1002/mds.29355
Ilkin Aygun, Alicja Rzepczak, Takashi S. Miki, „A germline-targeted genetic screen for xrn-2 suppressors identifies a novel gene C34C12.2 in Caenorhabditis elegans”, Genetics and Molecular Biology, 46, art. nr e20220328, 2023. DOI: 10.1590/1678-4685-GMB-2022-0328
Maciej Piernik, Dariusz Brzeziński, Paweł Zawadzki, „Random Similarity Forests”, Machine Learning and Knowledge Discovery in Databases, 13717, 53-69, 2023. DOI: 10.1007/978-3-031-26419-1_4
Piotr Piasecki, Kalina Wiatr, Miłosz Ruszkowski, Łukasz Marczak, Yvon Trottier, Maciej Figiel, „Impaired interactions of ataxin-3 with protein complexes reveals their specific structure and functions in SCA3 Ki150 model”, Frontiers in Molecular Neuroscience, 16, art. nr 1122308, 2023. DOI: 10.3389/fnmol.2023.1122308
Monika Piwecka, Agnieszka Fiszer, Katarzyna Rolle, Marta Olejniczak, „RNA regulation in brain function and disease 2022 (NeuroRNA): A conference report”, Frontiers in Molecular Neuroscience, 16, art. nr 1133209, 2023. DOI: 10.3389/fnmol.2023.1133209
Dorota Wronka, Anna Karlik, Julia O. Misiorek, Łukasz Przybył, „What the Gut Tells the Brain—Is There a Link between Microbiota and Huntington’s Disease?”, International Journal of Molecular Sciences, 24, art. nr 4477, 2023. DOI: 10.3390/ijms24054477
Maria Rutkiewicz, Isabel Nogues, Wojciech Witek, Sebastiana Angelaccio, Roberto Cotestabile, Miłosz Ruszkowski, „Insights into the substrate specificity, structure, and dynamics of plant histidinol-phosphate aminotransferase (HISN6)”, Plant Physiology and Biochemistry, 196, 759-773, 2023. DOI: 10.1016/j.plaphy.2023.02.017
Amanda Pacholak, Joanna Żur-Pińska, Artur Piński, Quynh Anh Nguyen, Marta Ligaj, Magdalena Łuczak, Long D. Nghiem, Ewa Kaczorek, „ Potential negative effect of long-term exposure to nitrofurans on bacteria isolated from wastewater”, 872, art. nr 162199,
2023. DOI: 10.1016/j.scitotenv.2023.162199
Karolina Nowicka-Bauer, Marta Ignasiak-Kciuk, Marta Grzechowiak, Tina Ravensborg, Kamil Frąckowiak, Ole N. Jansen, Mariusz Jaskólski, Bronisław Marciniak, „An Interdisciplinary Approach to Study Mechanisms of Sensitized Photo-Oxidation of Protiens”, Free Radical Biology Medicine, 201, 40-40, 2023. DOI:10.1016/j.freeradbiomed.2023.03.229
Agnieszka Rybarczyk, Dorota Formanowicz, Marcin Radom, Piotr Formanowicz, „Cholesterol Metabolism Pathways Disturbances in Atherosclerosis-Analyses Using Stochastic Petri Net-Based Model”, Applied Sciences-Basel, 13, art. nr 6149, 2023. DOI: 10.3390/app13106149
Łukasz Ciecierski, Ireneusz Stolarek, Marek Figlerowicz, „Human AGEs: an interactive spatio-temporal visualization and database of human archeogenomics”, Nucleic Acids Research, 51, W269-W273, 2023. DOI: 10.1093/nar/gkad428
Agata Tyczewska, Tomasz Twardowski, Ewa Woźniak-Gientka, „Agricultura biotechnology for sustainable food security”, Trends in Biotechnology, 41, 331-341, 2023. DOI: 10.1016/j.tibtech.2022.12.013
Katarzyna Woźniak, Krzysztof Brzeziński, „Biological Catalysis and Information Storage Have Relied on N-Glycosyl Derivatives of β-D-Ribofuranose since the Origins of Life”, Biomolecules, 13, art. nr 782, 2023. DOI: 10.3390/biom13050782
Anna Pawelczyk, Rafał Nowak, Monika Gazecka, Anna Jelińska, Lucjusz Zaprutko, Paweł Zmora, „Novel Molecular Consortia of Cannabidiol with Nonsteroidal Anti-Inflammatory Drugs Inhibit Emerging Coronaviruses’ Entry”, Pathogens, 12, art. nr 951, 2023. DOI:10.3390/pathogens12070951
Tomasz Laskowski, Michał Kosno, Witold Andrałojć, Joanna E. Frąckowiak, Julia Borzyszkowska-Bukowska, Paweł Szczeblewski, Nikola Radon, Maria Świerzewska, Anna Woźny, Ewa Paluszkiewicz, Zofia Mazerska,” The interactions of monomeric acridines and unsymmetrical bisacridines (UAs) with DNA duplexes: an insight provided by NMR and MD studies”, Scientific Reports, 13, art. nr 3431, 2023. DOI: 10.1038/s41598-023-30587-y
Magdalena Paluch, Dongren Wang, Michael R. Buchmeiser, Marcin K. Chmielewski, „Pyridin-2-yl-substituted smart polymers sensitive to thermally triggered side group cyclization”, European Polymer Journal, 186, art. nr 111865, 2023. DOI:10.1016/j.eurpolymj.2023.111865
Kamilla Grzywacz, Agnieszka Chełkowska-Pauszek, Marianna Plucińska-Jankowska, „The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn2+ in the Detection of 2′-OH Adducts”, International Journal of Molecular Sciences, 24, art. nr
7890, 2023. DOI: 10.3390/ijms24097890
Marta Ignasiak-Kciuk, Karolina Nowicka-Bauer, Marta Grzechowiak, Tina Ravnsborg, Kamil Frąckowiak, Ole N. Jensen, Mariusz Jaskólski, Bronisław Marciniak, „Does the presence of ground state complex between a PR-10 protein and a sensitizer affect the mechanism of
sensitized photo-oxidation?”, Free Radical Biology and Medicine, 198, 27-43, 2023. DOI:10.1016/j.freeradbiomed.2023.01.022
Agata Tyczewska, Alicja Rzepczak, Daria Sobańska, Kamilla Grzywacz, „The emerging roles of tRNAs and tRNA-derived fragments during aging: Lessons from studies on model organisms”, Ageing Research Reviews, 85, art. nr 101863, 2023. DOI: 10.1016/j.arr.2023.101863
Natalia Szóstak, Luiza Handschuh, Anna Samelak-Czajka, Katarzyna Tomela, Marcin
Schmidt , Łukasz Prusse, Kaja Milanowska-Zabel, Piotr Kozłowski, Anna Philips, „Host Factors Associated with Gut Mycobiome Structure”, mSystems, 8, 2023. DOI:10.1128/msystems.00986-22
Andrii Pyrih, Andrzej Łapiński, Sylwia Zięba, Roman Lesyk, Mariusz Jaskólski, Andrzej K. Gzella, „Proton tautomerism and stereoisomerism of 4-amino-1,3-thiazol-2(5H)-one derivatives bearing substituents with opposite electronic effects: Synthesis, structure and
spectroscopic studies”, Journal of Molecular Structure, 1274, 134441, 2023. DOI:10.1016/j.molstruc.2022.134441
Daniel Baranowski, Adam Mieczkowski, Damian Trzybiński, Krzysztof Woźniak, Katarzyna Bednarska-Szczepaniak, Zofia Gdaniec, Zbigniew J. Leśnikowski, „Insights into molecular structure of adenosine-boron cluster conjugates and theirs phenyl isosters as adenosine receptor ligands: Nuclear magnetic resonance, crystallographic and computational studies”, 1274, art. nr 134588, 2023. DOI: 10.1016/j.molstruc.2022.134588
Marcin Michalak, Beata Patrycja Plitta-Michalak, Jan Suszka, Mirosława Zofia Naskręt- Barciszewska, Szymon Kotlarski, Jan Barciszewski, Paweł Chmielarz, „Identification of DNA Methylation Changes in European Beech Seeds during Desiccation and Storage”,
International Journal of Molecular Sciences, 24, art. nr 3557, 2023. DOI:10.3390/ijms24043557
Magdalena Stefaniak, Monika Derda, Paweł Zmora, Szymon Paweł Nowak, „ Risk Factors and the Character of Clinical Course of the Echinococcus multilocularis Infection in Patients in Poland”, Pathogens, 12, art. nr 199, 2023. DOI: 10.3390/pathogens12020199
Paweł Drożdżal, Tomasz Manszewski, Mirosław Gilski, Krzysztof Brzeziński, Mariusz Jaskólski, „Right-handed Z-DNA at ultrahigh resolution: a tale of two hands and the power of the crystallographic method”, Acta Crystallographica Section B-Structural Biology, 79, 133-139, 2023. DOI: 10.1107/S2059798322011937
Laura Dabos, Joanna E. Raczyńska, Pierre Bogaerts, Agustin Zavala, Delphine Girlich, Remy A. Bonnin, Laurent Dortet, Aurélie Peyrat, Pascal Retailleau, Bogdan I. Iorga, Mariusz Jaskólski, Youri Glupczynski, Thierry Naas, „Structural and Biochemical Features of OXA-517: a Carbapenem and Expanded-Spectrum Cephalosporin Hydrolyzing OXA-48 Variant”, Antimicrobial Agents and Chemotherapy, 67, 2023. DOI: 10.1128/aac.01095-22
Jakub Michalski, Cezary Odrzygóźdź, Patrick Master, Dorota Narożna, Tomasz Cłapa, „Defeat undefeatable: Ionic liquids as novel antimicrobial agents”, Journal of Molecular Liquids, 369, art. nr 120782, 2023. DOI: 10.1016/j.molliq.2022.120782
Izabela Szcześniak, Agnieszka Baliga-Gil, Aleksandra Jarmołowicz, Marta Soszyńska-Jóźwiak, Elżbieta Kierzek, „Structural and Functional RNA Motifs of SARS-CoV-2 and Influenza A Virus as a Target of Viral Inhibitors”, International Journal of Molecular Sciences, 24, art. nr 1232, 2023. DOI: 10.3390/ijms24021232
Anna Parus, Oskar Zdebelak, Tomasz Ciesielski, Radosław Szumski, Marta Woźniak-Karczewska, Grzegorz Framski, Daniel Baranowski, Michał Niemczak, Joanna Zembrzuska, Tomáš Cajthaml, Hermann J. Heipieper, Łukasz Chrzanowski, „Can ionic liquids exist in the soil environment? Effect of quaternary ammonium cations on glyphosate sorption, mobility and toxicity in the selected herbicidal ionic liquids”, Journal of Molecular Liquids, 370, art. nr 120981, 2023. DOI: 10.1016/j.molliq.2022.120981
Gopal Singh, Himani Agrawal, Paweł Bednarek, „Specialized metabolites as versatile tools in shaping plant–microbe associations”, Molecular Plant, 16, 122-144, 2023. DOI:10.1016/j.molp.2022.12.006
Rajeev Singla, Ronita De, Thomas Efferth, Bruno Mezzetti, Md Sahab Uddin, Sanusi, Fidele Ntie-Kang, Dongdong Wang, Fabien Schultz, Kiran R. Kharat, Hari Prasad Devkota, Maurizio Battino, Daniel Sur, Ronan Lordan, Sourav S. Patnaik, Christos Tsagkaris, Chandragiri Siva Sai, Surya Kant Tripathi, Mihnea-Alexandru Gaman, Mosa E. O. Ahmed, Elena Gonzalez-Burgos, Smith B. Babiaka, Shravan Kumar Paswan, Joy Ifunanya
Odimegwu, Faizan Akram, Jesus Simal-Gandara, Magali S. Urquiza, Aleksei Tikhonov, Himel Mondal, Shailja Singla, Sara Di Lonardo, Eoghan J. Mulholland, Merisa Cenanovic, Abdulkadir Yusif Maigoro, Francesca Giampieri, Soojin Lee, Nikolay T. Tzvetkov, Anna Maria Louka, Pritt Verma, Hitesh Chopra, Scarlett Perez Olea, Johra Khan, Jose M. Alvarez Suarez, Xiaonan Zheng, Michał Tomczyk, Manoj Kumar Sabnani, Christhian Delfino Villanueva Medina, Garba M. Khalid, Hemanth Kumar Boyina, Milen I. Georgiev, Claudiu T. Supuran, Eduardo Sobarzo-Sanchez, Tai-Ping Fan, Valeria Pittala, Antoni Sureda, Nady Braidy, Gian Luigi Russo, Rosa Anna Vaca, MaciejBanach, Gerard Lizard, Amira Zarrouk, Sonia Hammami, Ilkay Erdogan Orhan, Bharat B. Aggarwal, George Perry, Mark J. S. Miller, Michael Heinrich, Anupam Bishayee, Anake Kijjoa, Nicolas Arkells, David Bredt, Michael Wink, Bernd L. Fiebich, Gangarapu Kiran, Andy Wai Kan Yeung, Girish Kumar Gupta, Antonello Santini, Massimo Lucarini, Alessandra Durazzo, A (Durazzo, Amr El-Demerdash, Albena T. Dinkova-Kostova, Alejandro Cifuentes, Eliana B. Souto, Muhammad Asim Masoom Zubair, Pravin Badhe, Javier Echeverria, Jaroslaw Olav Horbanczuk, Olaf K. Horbanczuk, Helen Sheridan, Sadeeq Muhammad Sheshe, Anna Maria Witkowska, Ibrahim Abu-Reidah, Muhammad Riaz, Hamad Ullah, Akolade R. Oladipupo, Victor Lopez, Neeraj Kumar Sethiya, Bhupal Govinda Shrestha, Palaniyandi Ravanan, Subash Chandra Gupta, Qushmua E. Alzahrani, Preethidan Dama Sreedhar, Jianbo Xiao, Mohammad Amin Moosavi, Parasuraman Aiya Subramani, Amit Kumar Singh, Ananda Kumar Chettupalli, Jayanta Kumar Patra, Gopal Singh, Tomasz M. Karpiński, Fuad Al-Rimawi, Rambod Abiri, Atallah F. Ahmed, Davide Barreca, Sharad Vats, Said Amrani, Carmela Fimognari, Andrei Mocan, Lucian Hritcu, Prabhakar Semwal, Md Shilbur Rahaman, Mila Emerald, Akinleye Stephen Akinrinde, Abhilasha Singh, Ashima Joshi, Tanuj Joshi, Shafaat Yar Khan, Gareeballah Osman Adam Balla, Aipin Lu, Sandeep Ramchandra Imen Ghzaiel, Niyazi Acar, Nour Eddine Es-Safi, Gokham Zengin, Azazahemad Kureshi, Arvind Kumar Sharma, Bikash Baral, Neeraj Rani, Philippe Jeandet, Monica Gulati, Bhupinder Kapoor, Yugal Kishore Mohanta, Zahra Emam-Djomeh, Raphael Onuku, Jennifer R. Depew, Omar M. Atrooz, Bey Hing Bey Goh, Jose Carlos Andrade, Bikramjit Konwar, V. J. Shine, Joao Miguel Lousa Ferreira, Jamil Ahmad, Vivek K. Chaturvedi, Krystyna Skalicka-Woźniak, Rohit Sharma,
Rupesh K. Gautam, Sebastian Granica, Salvatore Parisi, Rishabh Kumar, Atansa G. Atanasov, Bairong Shen, „The International Natural Product Sciences Taskforce (INPST) and the power of Twitter networking exemplified through #INPST hashtag analysis”, Phytomedicine, 108, art. nr 154520, 2023. DOI: 10.1016/j.phymed.2022.154520
Dawid Perlikowski, Aleksandra Skirycz, Łukasz Marczak, Katarzyna Lechowicz, Adam Augustyniak, Änna Michaelis, Arkadiusz Kosmala, „Metabolism of crown tissue is crucial for drought tolerance and recovery after stress cessation in Lolium/Festuca forage grasses”, Journal of Experimental Botany, 74, 396-414, 2023. DOI: 10.1093/jxb/erac398
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Ernest Ewert, Izabela Pospieszna-Markiewicz, Martyna Szymańska, Adrianna Kurkiewicz, Agnieszka Belter, Maciej Kubicki, Violetta Patroniak, Marta Fik-Jaskółka, Giovanni N. Roviello, „New N4-Donor Ligands as Supramolecular Guests for DNA and RNA: Synthesis, Structural Characterization, In Silico, Spectrophotometric and Antimicrobial Studies”, Molecules, 28, art. nr 400, 2023. DOI: 10.3390/molecules28010400
Siva S. Panda, Marian N. Aziz, Jacek Stawiński, Adel S. Girgis, „Azomethine Ylides— Versatile Synthons for Pyrrolidinyl-Heterocyclic Compounds”, Molecules, 28, art. nr 668, 2023. DOI: 10.3390/molecules28020668
Dagny Lorent, Rafał Nowak, Monika Jankowska, Łukasz Kuszel, Paweł Zmora, „Differences in BNT126b2 and ChAdOx1 Homologous Vaccination Antibody Response among Teachers in Poznan, Poland”, Vaccines, 11, art. nr 118, 2023. DOI:10.3390/vaccines11010118
Beata Drabińska, Katarzyna Dettlaf, Tomasz Ratajczak, Kacper Kossakowski, Marcin K. Chmielewski, Judyta Cielecka-Piontek, Jacek Kujawski, „Structural and Spectroscopic Properties of Isoconazole and Bifonazole—Experimental and Theoretical Studies”, International Journal of Molecular Sciences, 24, art. nr 520, 2023. DOI:10.3390/ijms24010520
Krzysztof Lewandowski, Agata Kopydłowska, Zuzanna Kanduła, Bartłomiej Sankowski, Marcin Machnicki, Marta Barańska, Kinga Gwóźdź-Bąk, Tadeusz Kubicki, Anna Płotka, Łucja Przysiecka, Grzegorz Dworacki, Piotr Kozłowski, Tomasz Stokłosa, „HRAS mutation positive multiple myeloma in the type 2 CALR mutation positive essential thrombocythemia: A case report”, Journal of Cellular and Molecular Medicine, 27, 299-
303, 2023. DOI: 10.1111/jcmm.17647
Weronika Kotkowiak, Carolina Roxo, Anna Pasternak, „Physicochemical and antiproliferative characteristics of RNA and DNA sequence-related G-quadruplexes”, ACS Medicinal Chemistry Letters, 14, 35-40, 2023. DOI: 10.1021/acsmedchemlett.2c0036135
MaŁgorzata Marszałek-Zeńczak, Anastasiia Satyr, Paweł Wojciechowski, Michał Zeńczak, Paula Sobieszczańska, Krzysztof Brzeziński, Tetiana Iefimenko, Marek Figlerowicz, Agnieszka Żmieńko, „Analysis of Arabidopsis non-reference accessions reveals high diversity of metabolic gene clusters and discovers new candidate cluster members”, Frontiers in Plant Science, 14, 1104303, 2023. DOI: 10.3389/fpls.2023.1104303
Gopal Singh, Himani Agrawal, Paweł Bednarek, „Specialized metabolites as versatile tools in shaping plant-microbe associations”, Molecular Plant, 16, 122-144, 2023. DOI:10.1016/j.molp.2022.12.006
Paweł Joachimiak, Adam Ciesiołka, Emilia Kozłowska, Paweł M. Świtoński, Grzegorz Figura, Agata Ciołak, Grażyna Adamek, Magdalena Surdyka, Żaneta Kalinowska-Pośka, Maciej Figiel, Nicholas S. Caron, Michael R. Hayden, Agnieszka Fiszer, „Allele-specific
quantitation of ATXN3 and HTT transcripts in polyQ disease models”, BMC Biology, 21, 17,
2023. DOI: 10.1186/s12915-023-01515-3
Justyna Lalak-Kańczugowska, Natalia Witaszak, Agnieszka Waśkiewicz, Jan Bocianowski, Łukasz Stępień, „Plant Metabolites Affect Fusarium proliferatum Metabolism and In Vitro Fumonisin Biosynthesis”, International Journal of Molecular Sciences, 24, art. nr 3002, 2023. DOI: 10.3390/ijms24033002

2022

Krzysztof Lewandowski, Zuzanna Kanduła, Michał Gniot, Edyta Paczkowska, Paulina Maria Nawrocka, Marzena Wojtaszewska, Michał Janowski, Magdalena Mariak, Luiza Handschuh, Piotr Kozłowski, „Essential thrombocythaemia progression to the fibrotic phase is associated with a decrease in JAK2 and PDL1 levels”, Annals of Hematology, 101, 2665-2677, 2022. DOI10.1007/s00277-022-05001-8
Andrzej Nowicki, Dariusz Wawrzyniak, Mikołaj Czajkowski, Małgorzata Jóźwiak, Michał Pawlak, Marcin Wierzchowski, Katarzyna Rolle, Paulina Skupin-Mrugalska, Hanna Piotrowska-Kempisty, „Enhanced biological activity of liposomal methylated resveratrol analog 3′-hydroxy-3,4,5,4′-tetramethoxystilbene (DMU-214) in 3D patient-derived ovarian cancer model”, Drug Delivery, 29, 2459-2468, 2022. DOI10.1080/10717544.2022.2103210
Ewa Woźniak-Gientka, Agata Tyczewska, Milica Perisic, Anna Beniermann, Dennis Eriksson, Nick Vangheluwe, Godelieve Gheysen, Selim Cetiner, Nghmeh Abiri, Tomasz Twardowski, „ Public perception of plant gene technologies worldwide in the light of food security”, GM Crops & Food-Biotechnology in Agriculture and the Food Chain, 13, 218-241, 2022. DOI10.1080/21645698.2022.2111946
Maria Nalewaj, Marta Szabat, „ Examples of Structural Motifs in Viral Genomes and Approaches for RNA Structure Characterization”, International Journal of Molecular Sciences, 23, art. nr 15917, 2022. DOI10.3390/ijms232415917
Beata Drabińska, Katarzyna Dettlaff, Tomasz Ratajczak, Kacper Kossakowski, Marcin K. Chmielewski, Judyta Cielecka-Piontek, Jacek Kujawski, „Structural and Spectroscopic Properties of Isoconazole and Bifonazole—Experimental and Theoretical Studies”, International Journal of Molecular Sciences, 24, art. nr 520, 2022. DOI10.3390/ijms24010520
Katarzyna Biniek-Antosiak, Magdalena Bejger, Joanna Śliwiak, Daniel Baranowski, Ahmed S. A. Mohammed, Dmitri I. Svergun, Wojciech Rypniewski, „Structural, Thermodynamic and Enzymatic Characterization of N,N-Diacetylchitobiose Deacetylase from Pyrococcus chitonophagus”, International Journal of Molecular Sciences, 23, art. nr 15736, 2022. DOI10.3390/ijms232415736
Paweł Bąkowski, Kamilla Grzywacz, Agnieszka Prusińska, Kinga Ciemniewska-Gorzela, Justus Gille, Tomasz Piontek, „Autologous Matrix-Induced Chondrogenesis (AMIC) for Focal Chondral Lesions of the Knee: A 2-Year Follow-Up of Clinical, Proprioceptive, and Isokinetic Evaluation”, Journal of Functional Biomaterials, 13, art. nr 277, 2022. DOI10.3390/jfb13040277
Gopal Singh, Himani Agrawal, Paweł Bednarek, „Specialized metabolites as versatile tools in shaping plant–microbe associations”, Molecular Plant, 16, 122-144, 2022. DOI10.1016/j.molp.2022.12.006
Devadetta Gosavi, Iwona Wower, Irene K. Beckmann, Ivo L. Hofacker, Jacek Wower, Michael T. Wolfinger, Joanna Sztuba-Solińska, „Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus Internal Ribosome Entry Site”, RNA Biology, 19, 496-506, 2022. DOI10.1080/15476286.2022.2058818
Magdalena Machowska, Paulina Gałka-Marciniak, Piotr Kozłowski, „Consequences of genetic variants in miRNA genes”, Computational and Structural Biotechnology Journal, 20, 6443-6457, 2022. DOI10.1016/j.csbj.2022.11.036
Anna-Maria Barciszewska, Agnieszka Belter, Iwona Gawrońska, Małgorzata Giel-Pietraszuk, Mirosława Z. Naskręt-Barciszewska, „Cross-reactivity between histone demethylase inhibitor valproic acid and DNA methylation in glioblastoma cell lines”, Frontiers in Oncology, 12, art. nr 1033035, 2022. DOI10.3389/fonc.2022.1033035
Malwina Gabryel-Skrodzka, Martyna Nowak, Anna Teubert, Renata Jastrząb, „Coordination Chemistry of Phosphate Groups in Systems Including Copper(II) Ions, Phosphoethanolamine and Pyrimidine Nucleotides”, International Journal of Molecular Sciences, 23, art. nr 13718, 2022. DOI10.3390/ijms232213718
Janusz Wiśniewski, Jakub Barciszewski, Jakub Turlik, Karolina Baran, Przemysław Duda, Mariusz Jaskólski, Dariusz Rakus, „High-Resolution Crystal Structure of Muscle Phosphoglycerate Mutase Provides Insight into Its Nuclear Import and Role”, International Journal of Molecular Sciences, 23, art. nr 13198, 2022. DOI10.3390/ijms232113198
Tomasz Koczorowski, Wojciech Szczolko, Paweł Bakun, Barbara Wicher, Łukasz Sobotta, Maria Gdaniec, Anna Teubert, Jadwiga Mielcarek, Ewa Tykarska, Józef Korecki, Kvetoslava Burda, Tomasz Gośliński, „The Valence and Spin State Tuning of Iron(II/III) Porphyrazines with Bulky Pyrrolyl Periphery in Solution and Solid State”, Molecules, 27, art. nr 7820, 2022. DOI10.3390/molecules27227820
Weronika Porolnik, Monika Kasprzycka, Kinga Podciechowska, Anna Teubert, Jarosław Piskorz, „Synthesis and spectroscopic properties of novel dipyrrole and tetrapyrrole-based photosensitizers with various biphenylyl substituents”, Tetrahedron, 127, art. nr 133088,
2022. DOI10.1016/j.tet.2022.133088
Marcin Koliński, Ewelina Kałużna, Monika Piwecka, „RNA–protein interactomes as invaluable resources to study RNA viruses: Insights from SARS CoV-2 studies”, Wiley Interdisciplinary Reviews-RNA, 13, art. nr e1727, 2022. DOI10.1002/wrna.1727
Satenik Mkrtchyan, Michał Jakubczyk, Suneel Lanka, Muhammad Yar, Tariq Mahmood, Khurshid Ayub, Mika Sillanpää, Christine M. Thomas, Viktor O. Iaroshenko, „Mechanochemical Ni-Catalysed Arylation of ortho-Hydroxyarylenaminones: Synthesis of Isoflavones”, Advanced Synthesis & Catalysis, 364, 3512-3521, 2022. DOI10.1002/adsc.202200645
Ireneusz Stolarek, Anna Samelak-Czajka, Marek Figlerowicz, Paulina Jackowiak, „Dimensionality reduction by UMAP for visualizing and aiding in classification of imaging flow cytometry data”, iScience, 25, art. nr 105142, 2022. DOI10.1016/j.isci.2022.105142
Paweł Czerniawski, Mariola Piślewska-Bednarek, Anna Piasecka, Karolina Kułak, Paweł Bednarek, „Loss of MYB34 transcription factor supports backward evolution of indole glucosinolate biosynthesis in a subclade of Camelineae tribe and releases feedback loop in this pathway in Arabidopsis”, Plant & Cell Physiology, art. nr pcac142, 2022. DOI10.1093/pcp/pcac142
Marcin Biesiada, Michael Y Hu, Loren Dean Williams, Katarzyna J. Purzycka, Anton S. Petrov, „rRNA expansion segment 7 in eukaryotes: from Signature Fold to Tentacles”, Nucleic Acids Research, 50, 10717–10732, 2022. DOI10.1093/nar/gkac844
Anna Piasecka, Aneta Sawikowska, Natalia Witaszak, Agnieszka Waśkiewicz, Marta Kańczurzewska, Joanna Kaczmarek, Justyna Lalak-Kańczugowska, „Metabolomic Aspects of Conservative and Resistance-Related Elements of Response to Fusarium culmorum in
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Dagny Lorent, Rafał Nowak, Dawid Luwański, Magdalena Pisarska-Krawczyk, Magdalena Figlerowicz, Paweł Zmora, „The Longitudinal Analysis on the Anti-SARS-CoV-2 Antibodies among Healthcare Workers in Poland—Before and after BNT126b2 mRNA COVID-19
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Jan J. Rybczyński, Łukasz Marczak, Maciej Stobiecki, Aleksander Strugała, Anna Mikuła, „The Metabolite Content of the Post-Culture Medium of the Tree Fern Cyathea delgadii Sternb. Cell Suspension Cultured in the Presence of 2,4-D and BAP”, International Journal of Molecular Sciences, 23, art. nr 11783, 2022. DOI10.3390/ijms231911783
Anna Parus, Natalia Lisiecka, Joanna Zembrzuska, Grzegorz Framski, Marta Woźniak-Karczewska, Michał Niemczak, „Evaluation of the influence of different cations on the mobility and performance of dicamba-based ionic liquids”, Journal of Environmental Chemical Engineering, 10, art. nr 108397, 2022. DOI10.1016/j.jece.2022.108397
Dawid Perlikowski, Aleksandra Skirycz, Łukasz Marczak, Katarzyna Lechowicz, Adam Augustyniak, Anna Michäelis, Arkadiusz Kosmala „Metabolism of crown tissue is crucial for drought tolerance and recovery after stress cessation in Lolium/Festuca forage grasses”, Journal of Experimental Botany, art. nr erac398, 2022. DOI10.1093/jxb/erac398

29. Ewa Bretes, Jacek Wróblewski, Monika Wyszczelska-Rokiel, Hieronim Jakubowski,„Cystathionine β-synthase gene inactivation dysregulates major urinary protein biogenesis and impairs sexual signaling in mice”, FASEB Journal, 36, art. nr e22547, 2022. DOI10.1096/fj.202200969R
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Isabel Nogues, Bartosz Sekula, Sebastiana Angelaccio, Marta Grzechowiak, Angela Tramonti, Roberto Contestabile, Miłosz Ruszkowski, „Arabidopsis thaliana serine hydroxymethyltransferases: functions, structures, and perspectives”, Plant Physiology and Biochemistry, 187, 37-49, 2022. DOI 10.1016/j.plaphy.2022.07.025
Magdalena Surdyka, Ewelina Jesion, Anna Niewiadomska-Cimicka, Yvon Trottier, Żaneta Kalinowska-Pośka, Maciej Figiel, „Selective transduction of cerebellar Purkinje and granule neurons using delivery of AAV-PHP.eB and AAVrh10 vectors at axonal terminal
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Marta Szabat, Martina Prochota, Ryszard Kierzek, Elżbieta Kierzek, David H. Mathews, „A Test and Refinement of Folding Free Energy Nearest Neighbor Parameters for RNA Including N6-Methyladenosine”, Journal of Molecular Biology, 434, art. nr 167632, 2022. DOI10.1016/j.jmb.2022.167632
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Magdalena Surdyka, Anna Niewiadomska-Cimicka, Żaneta Kalinowska-Poska, Ewelina Jesion, Elisabeth Singer-Mikosch, Lorraine Fievet, Agnieszka Fiszer, Nicholas S. Caron, Michael R. Hayden, Huu Phuc Nguyen, Yvon Trottier, Maciej Figiel, „CAG-targeted brain-permeable protein lowering strategy tested in polyQ mouse models”, Journal of Neurology, Neurosurgery & Psychiatry, 93, A85-A86, 2022. DOI10.1136/jnnp-2022-ehdn.229
Giuseppe Pepe, Luca Capocci, Federico Marracino, Sam J. Moons, Aynur Sönmez, Karolina Świtońska-Kurkowska, Pamela Scarselli, Clotilde Di Cicco, Maciej Figiel, Thomas J. Boltje, Rosanna Parlato, Alba Di Pardo, Vittorio Maglione, „The defective metabolism of polysialic
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Karolina Świtońska-Kurkowska, Jakub Kubiś, Joanna M. Delimata, Luiza Handschuh, Maciej Figiel, „Juvenile HD fused brain organoids of dorsal and ventral origin to understand early neurodevelopmental aspects of neurodegenerative diseases”, Journal of Neurology, Neurosurgery & Psychiatry, 93, A14-A15, 2022. DOI10.1136/jnnp-2022-ehdn.41
Witold Andrałojć, Julia Wieruszewska, Karol Pasternak, Zofia Gdaniec, „Solution Structure of a Lanthanide-binding DNA Aptamer Determined Using High Quality pseudocontact shift restraints”, Chemistry. A European Journal, 2022. DOI10.1002/chem.202202114
Anna Piasecka, Aneta Sawikowska, Nicolas Jedrzejczak-Rey, Mariola Piślewska-Bednarek, Paweł Bednarek, „Targeted and Untargeted Metabolomic Analyses Reveal Organ Specificity of Specialized Metabolites in the Model Grass Brachypodiumdistachyon”, Molecules, 27, art. nr 5956, 2022. DOI10.3390/molecules27185956
Małgorzata Zawadzka, Angelika Andrzejewska-Romanowska, Julita Gumna, David J. Garfinkel, Katarzyna Pachulska-Wieczorek, „Cell Compartment-Specific Folding of Ty1 Long Terminal Repeat Retrotransposon RNA Genome”, Viruses-Basel, 14, art. nr 2007, 2022. DOI10.3390/v14092007
Dawid Łażewski, Małgorzata Kucińska, Edward Potapskiy, Joanna Kuźmińska, Artur Tezyk, Łukasz Popenda, Stefan Jurga, Anna Teubert, Zofia Gdaniec, Jacek Kujawski, Katarzyna Grzyb, Tomasz Pedziński, Marek Murias, Marcin Wierzchowski, „Novel Short PEG Chain-Substituted Porphyrins: Synthesis, Photochemistry, and In Vitro Photodynamic Activity against Cancer Cells”, International Journal of Molecular Sciences, 23, art. nr 10029, 2022. DOI10.3390/ijms231710029
Natalia Bartyś, Anna Pasternak, Jolanta Lisowiec-Wąchnicka, „Optimization of Bifunctional Antisense Oligonucleotides for Regulation of Mutually Exclusive Alternative Splicing of PKM Gene”, Molecules, 27, art. nr 5682, 2022. DOI10.3390/molecules27175682
Julita Gumna, Maciej Antczak, Ryszard W. Adamiak, Janusz M. Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzyńska, Tomasz Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Zhichao Miao, Marta Szachniuk, Agnieszka Rybarczyk, „Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models”, International Journal of Molecular Sciences, 23, art. nr 9630, 2022. DOI10.3390/ijms23179630
Joanna Szpotkowska, Kamil Szpotkowski, Jerzy Ciesiołka, „Structural Characteristics of the 5 '-Terminal Region of Mouse p53 mRNA and Identification of Proteins That Bind to This mRNA Region”, International Journal of Molecular Sciences, 23, art. nr 9709, 2022. DOI10.3390/ijms23179709

50. Joanna M. Macnar, Dariusz Brzeziński, Maksymilian Chruszcz, Dominik Gront, „Analysis of protein structures containing HEPES and MES molecules”, Protein Science, 31, art. nr e4415, 2022. DOI10.1002/pro.4415

51. Tina Pekec, Jarosław Lewandowski, Alicja A. Komur, Daria Sobańska, Yanwu Guo, Karolina Świtońska-Kurkowska, Jędrzej M. Małecki, Abhishek Anil Dubey, Wojciech Pokrzywa, Marcin Frankowski, Maciej Figiel, Rafał Ciosk, „Ferritin-mediated iron detoxification promotes hypothermia survival in Caenorhabditis elegans and murine neurons”, Nature Communications, 13, art. nr 4883, 2022. DOI10.1038/s41467-022-32500-z
Gopal Singh, Shikha Sharma, Sandeep Rawat, Ram Kumar Sharma, „Plant Specialised Glycosides (PSGs): their biosynthetic enzymatic machinery, physiological functions and commercial potential”, Functional Plant Biology, DOI10.1071/FP21294
Daria Sobańska, Alicja A. Komur, Agnieszka Chabowska-Kita, Julita Gumna, Pooja Kumari, Katarzyna Pachulska-Wieczorek, Rafał Ciosk, „The silencing of ets-4 mRNA relies on the functional cooperation between REGE-1/Regnase-1 and RLE-1/Roquin-1”, Nucleic Acids Research, 50, 8226-8239, 2022. DOI10.1093/nar/gkac609
Jakub Wiedemann, Jacek Kaczor, Maciej Miłostan, Tomasz Zok, Jacek Błażewicz, Marta Szachniuk, Maciej Antczak, „RNAloops: a database of RNA multiloops”, Bioinformatics, art. nr btac484, 2022. DOI10.1093/bioinformatics/btac484
Joanna I. Loch, Agnieszka Klonecka, Kinga Kądziołka, Piotr Bonarek, Jakub Barciszewski, Barbara Imiołczyk, Krzysztof Brzeziński, Mirosław Gilski, Mariusz Jaskólski, „Structural and biophysical studies of new L-asparaginase variants: lessons from random mutagenesis of the prototypic Escherichia coli Ntn-amidohydrolase”, Actra Crystallographica. Section D-Structural Biology, 78, 911-926, 2022. DOI10.1107/S2059798322005691
Federica Morani, Stefano Doccini, Daniele Galatolo, Francesco Pezzini, Rabah Soliymani, Alessandro Simonati, Maciej M. Lalowski, Federica Gemignani, Filippo M. Santorelli, „Integrative Organelle-Based Functional Proteomics: In Silico Prediction of Impaired Functional Annotations in SACS KO Cell Model”, Biomolecules, 12, art. nr 1024, 2022. DOI10.3390/biom12081024
Bartłomiej Szawulak, Marcin Radom, Piotr Formanowicz, „Comparing Petri net-based models of biological systems using Holmes”, Bioinformatics, 38, 4652-4653, 2022. DOI10.1093/bioinformatics/btac540
Tomasz Ostrowski, „Bioactive Furanyl- or Thienyl-Substituted Nucleobases, Nucleosides and Their Analogues”, Mini Reviews in Medicinal Chemistry, 2022. DOI10.2174/1389557522666220812125205
Magdalena Gawłowska, Lesław Lahuta, Lech Boros, Aneta Sawikowska, Pankaj Kumar, Michał Knopkiewicz, Zygmunt Kaczmarek, Wojciech Święcicki, „Validation of Molecular Markers Significant for Flowering Time, Plant Lodging, Stem Geometry Properties, and Raffinose Family Oligosaccharides in Pea (Pisum sativum L.)”, Agriculture-Basel, 12, art. nr 1125, 2022. DOI10.3390/agriculture12081125

60. Maciej Piernik, Dariusz Brzeziński, Pawel Sztromwasser, Klaudia Pacewicz, Weronika Majer-Burman, Michał Gniot, Dawid Sielski, Oleksii Bryzghalov, Alicja Woźna, Paweł Zawadzki, „DBFE: distribution-based feature extraction from structural variants in whole-genome data”, Bioinformatics, 38, 4466-4473, 2022. DOI10.1093/bioinformatics/btac513
Marta Grzechowiak, Agnieszka Ruszkowska, Joanna Śliwiak, Anna Urbanowicz, Mariusz Jaskólski, Miłosz Ruszkowski, „New aspects of DNA recognition by group II WRKY transcription factor revealed by structural and functional study of AtWRKY18 DNA binding domain”, International Journal of Biological Macromolecules, 213, 589-601, 2022. DOI10.1016/j.ijbiomac.2022.05.186
Piotr H. Małecki, Barbara Imiołczyk, Jakub Barciszewski, Justyna Czyrko-Horczak, Joanna Śliwiak, Magdalena Gaweł, Katarzyna Woźniak, Mariusz Jaskólski, Krzysztof Brzeziński, „Biochemical and structural insights into an unusual, alkali-metal-independent S-adenosyl-l-homocysteine hydrolase from Synechocystis sp. PCC 6803”, Acta Crystallographica. Section D-Structural Biology, 78, 865-882, 2022. DOI10.1107/S2059798322005605
Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk, „RNAsolo: a repository of cleaned PDB-derived RNA 3D structures”, Bioinformatics, 38, 3668-3670, 2022. DOI10.1093/bioinformatics/btac386
Jakub Idkowiak, Grażyna Kubiak-Tomaszewska, Paulina Gątarek, Łukasz Marczak, Joanna Kałużna-Czaplińska, Wiesław Tarnowski, Mariusz Uryszek, Barbara Bobrowska-Korczak, „Alterations in Blood Plasma Metabolome of Patients with Lesniowski-Crohn’s Disease Shortly after Surgical Treatment—Pilot Study”, Metabolities, 12, art. nr 529, 2022. DOI10.3390/metabo12060529
Marcin Michalak, Beata Patrycja Plitta-Michalak, Mirosława Z. Naskręt-Barciszewska, Jan
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Tomasz Czapik, Julita Piasecka, Ryszard Kierzek, Elżbieta Kierzek, „Structural variants and modifications of hammerhead ribozymes targeting influenza A virus conserved structural motifs”, Molecular Therapy. Nucleic Acids. 29, 64-74, 2022. DOI10.1016/j.omtn.2022.05.035
Jakub W. Strawa, Katarzyna Jakimiuk, Łukasz Szoka, Krzysztof Brzeziński, Paweł Drożdżal, Jerzy A. Pałka, Michał Tomczyk, „New Polymethoxyflavones from Hottonia palustris Evoke DNA Biosynthesis-Inhibitory Activity in An Oral Squamous Carcinoma (SCC-25) Cell Line”, Molecules, 27, art. nr 4415, 2022. DOI10.3390/molecules27144415
Michał Kosno, Tomasz Laskowski, Joanna E. Frąckowiak, Agnieszka Potęga, Agnieszka Kurdyn, Witold Andrałojć, Julia Borzyszkowska-Bukowska, Katarzyna Szwarc-Karabyka, Zofia Mazerska, „Acid–Base Equilibrium and Self-Association in Relation to High Antitumor Activity of Selected Unsymmetrical Bisacridines Established by Extensive Chemometric Analysis”, Molecules, 27. Art. nr 3995, 2022. DOI10.3390/molecules27133995
Venkatraman Sriramavaratharajan, David Raj Chellappan, Shanmugam Karthi, Mathialagan Ilamathi, Ramar Murugan, „Multi target interactions of essential oil nanoemulsion of Cinnamomum travancoricum against diabetes mellitus via in vitro, in vivo and in silico approaches”, 118, 190-204, 2022. DOI10.1016/j.procbio.2022.04.031
Sadaf Kalsum, Magdalena Otrocka, Blanka Andersson, Amanda Welin, Thomas Schön, Annika Jenmalm-Jensen, Thomas Lundbäck, Maria Lerm, „A high content screening assay for discovery of antimycobacterial compounds based on primary human macrophages infected with virulent Mycobacterium tuberculosis”, Tuberculosis, 135, art. nr 102222, 2022. DOI 10.1016/j.tube.2022.102222
Emilia Morawiec, Maria Miklasińska-Majdanik, Jolanta Bartosiewicz-Wąsik, Robert D. Wojtyczka, Denis Swolana, Irenerusz Stolarek, Michał Czerwiński, Aleksandra Skubis- Sikora, Magdalena Samul, Agnieszka Polak, Celina Kruszniewska-Rajs, Adam Pudełko, Marek Figlerowicz, Anna Bednarska-Czerwińska, Tomasz J. Wąski, „From Alpha to Delta—Genetic Epidemiology of SARS-CoV-2 (hCoV-19) in Southern Poland”, Pathogens, 11, art. nr 780, 2022. DOI10.3390/pathogens11070780
Michał Żurkowski, Tomasz Żok, Marta Szachniuk, „DrawTetrado to create layer diagrams of G4 structures”, Bioinformatics, 38, 3835-3836, 2022. DOI10.1093/bioinformatics/btac394
Agata Świątkowska, „p53 and Its Isoforms in Renal Cell Carcinoma—Do They Matter?”, Biomedicines, 10, art. nr 1330, 2022. DOI 10.3390/biomedicines10061330
Paulina Gałka-Marciniak, Zuzanna Kanduła, Adrian Tire, Władysław Węgorek, Kinga Gwóźdź-Bąk, Luiza Handschuh, Maciej Giefing, Krzysztof Lewandowski, Piotr Kozłowski, „Mutations in the miR-142 gene are not common in myeloproliferative neoplasms”, Scientific Reports, 12, art. nr 10924, 2022. DOI10.1038/s41598-022-15162-175.
Stefano Doccini, Maria Marchese, Federica Morani, Nicola Gammaldi, Serena Mero, Francesco Pezzini, Rabah Soliymani, Melissa Santi, Giovanni Signore, Asahi Ogi, Silvia Rocchiccioli, Katja M. Kanninen, Alessandro Simonati, Maciej M. Lalowski, Filippo M. Santorelli, „Lysosomal Proteomics Links Disturbances in Lipid Homeostasis and Sphingolipid Metabolism to CLN5 Disease”, Cells, 11, art. nr 1840, 2022. DOI10.3390/cells11111840
Jolanta Lisowiec-Wąchnicka, Mathias B. Danielsen, Eugenie Abi Nader, Per T. Jørgensen, Jesper Wengel, Anna Pasternak, „Evaluation of Gene Expression Knock-Down by Chemically and Structurally Modified Gapmer Antisense Oligonucleotides”, ChemBioChem, 23, art. nr e202200168, 2022. DOI 10.1002/cbic.202200168
Małgorzata Grabowska, Konrad Kuczyński, Monika Piwecka, Alicja Rabiasz, Joanna Zemła, Paweł Głodowicz, Dariusz Wawrzyniak, Małgorzata Lekka, Katarzyna Rolle, „miR-218 affects the ECM composition and cell biomechanical properties of glioblastoma cells”, 26, 3913-3930, 2022. DOI 10.1111/jcmm.17428
Jakub Zdarta, Katarzyna Jankowska, Urszula Strybel, Łukasz Marczak, Luong N.Nguyen, Piotr Oleskowicz-Popiel, Teofil Jesionowski, „Bioremoval of estrogens by laccase immobilized onto polyacrylonitrile/polyethersulfone material: Effect of inhibitors and mediators, process characterization and catalytic pathways determination”, Journal of Hazardous Materials, 432, art. nr 128688, 2022. DOI 10.1016/j.jhazmat.2022.128688
Anna Kotowska-Zimmer, Łukasz Przybył, Marianna Pewińska, Joanna Suszyńska-Zajczyk, Dorota Wronka, Maciej Figiel, Marta Olejniczak, „A CAG repeat-targeting artificial miRNA lowers the mutant huntingtin level in the YAC128 model of Huntington's disease”, Molecular Therapy Nucleic Acids, 28, 702-715, 2022. DOI10.1016/j.omtn.2022.04.031
Paweł Pawełczak, Agnieszka Fedoruk-Wyszomirska, Eliza Wyszko, „Antiaging Effect of 4-N-Furfurylcytosine in Yeast Model Manifests through Enhancement of Mitochondrial Activity and ROS Reduction”, Antioxidants, 11, art. nr 850, 2022. DOI10.3390/antiox11050850
Aleksandra Majewska, Klaudia Brodaczewska, Aleksandra Filipiak-Duliban, Arkadiusz Kajdasz, Claudine Kieda, „miRNA Pattern in Hypoxic Microenvironment of Kidney Cancer—Role of PTEN”, Biomolecules, 12, art. nr 686, 2022. DOI10.3390/biom12050686
Dorota Magner, Rafał Nowak, Elżbieta Lenartowicz Onyekaa, Anna Pasternak, Ryszard Kierzek, „A Structural Potential of Rare Trinucleotide Repeat Tracts in RNA”, International Journal of Molecular Sciences, 23, art. nr 5850, 2022. DOI10.3390/ijms23105850
Marta Nowacka-Chmielewska, Daniela Liśkiewicz, Arkadiusz Liśkiewicz, Marta Przybyła, Łukasz Marczak, Anna Wojakowska, Konstancja Grabowska, Mateusz Grabowski, Jarosław Jerzy Barski, Andrzej Małecki, „Global Proteome Profiling of the Temporal Cortex of Female Rats Exposed to Chronic Stress and the Western Diet”, Nutrients, 14, art. nr 1934, 2022. DOI10.3390/nu14091934
Saam Sadehizadeh, Marzena Wojciechowska, Ami Ketley, J. David Brook, Paul Maddison, „Splicing in two skeletal muscle transcripts correlates with clinical phenotype in myotonic dystrophy type 1 patients”, Journal of Neurology, 269, 2784-2787, 2022. DOI10.1007/s00415-021-10917-8
Michał Jakubczyk, Satenik Mkrtchyan, Mohanad Shkoor, Suneel Lanka, Simon Budzak, Miroslav Ilias, Marek Skorsepa, Viktor O. Iaroshenko, „Mechanochemical Conversion of Aromatic Amines to Aryl Trifluoromethyl Ethers”, Journal of the American Chemical Society, 144, 10438-10445, 2022. DOI10.1021/jacs.2c0261110438
Jakub Idkowiak, Grażyna Kubiak-Tomaszewska, Paulina Gątarek, Łukasz Marczak, Joanna Kałużna-Czaplińska, Wiesław Tarnowski, Mariusz Uryszek, Barbara Bobrowska-Korczak, „Alterations in Blood Plasma Metabolome of Patients with Lesniowski-Crohn’s Disease Shortly after Surgical Treatment—Pilot Study”, Metabolities, 12, art. 529, 2022. DOI10.3390/metabo12060529
Sebastian Rykowski, Dorota Gurda-Woźna, Marta Orlicka-Płocka, Agnieszka Fedoruk-Wyszomirska, Małgorzata Giel-Pietraszuk, Eliza Wyszko, Aleksandra Kowalczyk, Paweł Stączek, Katarzyna Biniek-Antosiak, Wojciech Rypniewski, Agnieszka B. Olejniczak, „Design of DNA Intercalators Based on 4-Carboranyl-1,8-Naphthalimides: Investigation of Their DNA-Binding Ability and Anticancer Activity”, International Journal of Molecular Sciences, 23, art. nr 4598, 2022. DOI10.3390/ijms23094598
Erkut Ilaslan, Krystyna Kwiatkowska, Maciej Jerzy Śmiałek, Marcin Piotr Sajek, Żaneta Lemańska, Matisa Alla, Damian Mikołaj Janecki, Jadwiga Jaruzelska, Kamila Kusz-Zamelczyk, „Distinct Roles of NANOS1 and NANOS3 in the Cell Cycle and NANOS3-PUM1-FOXM1 Axis to Control G2/M Phase in a Human Primordial Germ Cell Model”, International Journal of Molecular Sciences, 23, art. nr 6592, 2022. DOI10.3390/ijms23126592
Gabriela Siemiaszko, Agnieszka Hryniewicka, Joanna Breczko, Krzysztof Brzeziński, Marta E. Płońska-Brzezińska, „Carbon nano-onion induced organization of polyacrylonitrile-derived block star polymers to obtain mesoporous carbon materials”, Chemical Communications, 48, 6829-6832, 2022. DOI10.1039/d2cc01452a
Natalia Szóstak, Agata Szymanek, Jan Havránek, Katarzyna Tomela, Magdalena Rakoczy, Anna Samelak-Czajka, Marcin Schmidt, Marek Figlerowicz, Jan Majta, Kaja Milanowska-Zabel, Luiza Handschuh, Anna Philips, „The standardisation of the approach to metagenomic human gut analysis: from sample collection to microbiome profiling”, Scientific Reports, 12, art. nr 8470, 2022. DOI10.1038/s41598-022-12037-3
Abigail E. Asangba, Lawrence Mugisha, Joshua Rukundo, Rebecca J. Lewis, Ali Halajian, Liliana Cortés-Ortiz, Randall E. Junge, Mitchell T. Irwin, Johan Karlson, Andrew Perkin, Mrinalini Watsa, Gideon Erkenswick, Karen L. Bales, Dorothy L. Patton, Anna J. Jasińska, Eduardo Fernandez-Duque, Steven R. Leigh, Rebecca M. Stumpf, „Large Comparative Analyses of Primate Body Site Microbiomes Indicate that the Oral Microbiome Is Unique among All Body Sites and Conserved among Nonhuman Primates”, Microbiology Spectrum, 10, art. nr e01643-21, 2022. DOI10.1128/spectrum.01643-21
Joanna I. Loch, Jakub Barciszewski, Joanna Śliwiak, Piotr Bonarek, Paulina Wróbel, Kinga Pokrywka, Ivan G. Shabalin, Wladek Minor, Mariusz Jaskólski, Krzysztof Lewiński, „New ligand-binding sites identified in the crystal structures of β-lactoglobulin complexes with desipramine”, IUCrJ, 9, 386-398, 2022. DOI10.1107/S2052252522004183
Andrew D. Kauffmann, Scott D. Kennedy, Walter N. Moss, Elżbieta Kierzek, Ryszard Kierzek, Douglas H. Turner, „Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3′-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides”, RNA, 28, 508-522, 2022. DOI10.1261/rna.078951.121
Jarosław Synak, Agnieszka Rybarczyk, Jacek Błażewicz, „RNA World Modeling: A Comparison of Two Complementary Approaches”, Entropy, 24, art. nr 536, 2022. DOI10.3390/e24040536
Malwina Suszyńska, Magdalena Ratajska, Aleksandra Ryszkowska, Jarosław Dębniak, Dariusz Wydra, Cezar Cybulski, Bartosz Wasag, Piotr Kozłowski, „Analysis of BARD1, PRDM9, RCC1, and RECQL in patients with ovarian cancer by targeted next-generation sequencing of DNA pools”, European Journal of Human Genetics, 30, 418-418, 2022.
Emilia Iłowska, Jakub Barciszewski, Mariusz Jaskólski, Augustyn Moliński, Maciej Kozak, Aneta Szymańska, „Identification of a Steric Zipper Motif in the Amyloidogenic Core of Human Cystatin C and Its Use for the Design of Self-Assembling Peptides”, International Journal of Molecular Sciences, 23, art. nr 5800, 2022. DOI10.3390/ijms23105800
Marek Kazimierczyk, Marta Wojnicka, Ewa Biała, Paulina Żydowicz-Machtel, Barbara Imiołczyk, Tomasz Ostrowski, Anna Kurzyńska-Kokorniak, Jan Wrzesiński, „Characteristics of Transfer RNA-Derived Fragments Expressed during Human Renal Cell Development: The Role of Dicer in tRF Biogenesis”, International Journal of Molecular Sciences, 23, art. nr 3644, 2022. DOI10.3390/ijms23073644
Linglu Wang, Ponnuswamy Mohanasundaram, Michelle Lindstrom, Muhammad Nadeem Asghar, Giulia Sultana, Julia O. Misiorek, Yaming Jiu, Hongbo, Zhi Chen, Diana M. Toivola, Fang Cheng, John E. Eriksson, „Vimentin Suppresses Inflammation and Tumorigenesis in the Mouse Intestine”, Frontiers in Cell and Developmental Biology, 10, art. nr 862237, 2022. DOI10.3389/fcell.2022.862237
Tetiana Dyrda-Terniuk, Mateusz Sugajski, Oleksandra Pryshchepa, Joanna Śliwiak, Magdalena Buszewska-Forajta, Paweł Pomastowski, Bogusław Buszewski, „The Study of Protein–Cyclitol Interactions”, International Journal of Molecular Sciences, 23, art. nr 2940, 2022. DOI 10.3390/ijms23062940
Kamil Luwański, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzyńska, Daniil Martsich, Marta Szachniuk, Maciej Antczak, „RNAspider: a webserver to analyze entanglements in RNA 3D structures”, Nucleic Acids Research, 50, W663-W669, 2022. DOI10.1093/nar/gkac218
Emilia Morawiec, Maria Miklasińska-Majdanik, Jolanta Bratosiewicz-Wąsik, Robert D.Wojtyczka, Denis Swolana, Ireneusz Stolarek, Michał Czerwiński, Aleksandra Skubis-Sikora, Magdalena Samul, Agnieszka Polak, Celina Kruszniewska-Rajs, Adam Pudełko, Marek Figlerowicz, Anna Bednarska-Czerwińska, Tomasz J. Wąsik, „From Alpha to Delta—Genetic Epidemiology of SARS-CoV-2 (hCoV-19) in Southern Poland”, Pathogens, 11, art. nr 780, 2022. DOI10.3390/pathogens11070780
Karolina A. Ambrożkiewicz, Urszula Kozłowska, Valerie Haesler, Eytan R. Barnea, Martin Mueller, Maciej Kurpisz, „Murine glial progenitor cells transplantation and synthetic PreImplantation Factor (sPIF) reduces inflammation and early motor impairment in ALS mice”, Scientific Reports, 12, art. nr 4016, 2022. DOI10.1038/s41598-022-08064-9
Mariusz Jaskólski, Alexander Wlodawer, Zbigniew Dauter, Władek Minor, Bernhard Rupp, „Group depositions to the Protein Data Bank need adequate presentation and different archiving protocol”, Protein Science, 31, 784-786, 2022. DOI10.1002/pro.4271
Nivedita Dutta, Indrajit Deb, Joanna Sarzyńska, Ansuman Lahiri, „Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives”, Journal of Computer-Aided Molecular Design, 36, 205–224, 2022. DOI10.1007/s10822-022-00447-4
Elżbieta Kierzek, Xiaoju Zhang, Richard M. Watson, Scott D. Kennedy, Marta Szabat, Ryszard Kierzek, David H. Mathews, „Secondary structure prediction for RNA sequences including N6-methyladenosine”, Nature Communications, 13, art. nr 1271, 2022. DOI10.1038/s41467-022-28817-4
Badwi B. Boumelhem, Chelsea Pilgrim, Vincent E. Zwicker, Jacek L. Kolanowski, Jia Hao Yeo, Katrina A. Jolliffe, Elizabeth J. New, Margot L. Day, Stephen J. Assinder, Stuart T. Frase, „Intracellular flow cytometric lipid analysis – a multiparametric system to assess distinct lipid classes in live cells”, Journal of Cell Science, 135, art. nr jcs258322, 2022. DOI10.1242/jcs.258322
Dorota Formanowicz, Marcin Radom, Agnieszka Rybarczyk, Krzysztof Tanaś, Piotr Formanowicz, „Control of Cholesterol Metabolism Using a Systems Approach”, Biology-Basel, 11, art. nr 430, 2022. DOI10.3390/biology11030430
Urszula Strybel, Łukasz Marczak, Marcin Zeman, Krzysztof Polański, Łukasz Mielańczyk, Olesya Klymenko, Anna Samelak-Czajka, Paulina Jackowiak, Mateusz Smolarz, Mykola Chekan, Ewa Zembala-Nożyńska, Piotr Widlak, Monika Pietrowska, Anna Wojakowska, „Molecular Composition of Serum Exosomes Could Discriminate Rectal Cancer Patients with Different Responses to Neoadjuvant Radiotherapy”, Cancers, 14, art. nr 993, 2022. DOI10.3390/cancers14040993
Łukasz Kasprzak, Mateusz Twardawa, Piotr Formanowicz, Dorota Formanowicz, „The Mutual Contribution of 3-NT, IL-18, Albumin, and Phosphate Foreshadows Death of Hemodialyzed Patients in a 2-Year Follow-Up”, Antioxidants, 11, art. nr 355, 2022. DOI10.3390/antiox11020355
Francisco Carrascoza, Maciej Antczak, Zhichao Miao, Eric Westhof, Marta Szachniuk, „Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions”, RNA, 28, 250-262, 2022. DOI10.1261/rna.078685.121
Marta Soszyńska-Jóźwiak, Agnieszka Ruszkowska, Ryszard Kierzek, Collin A. O’Leary, Walter N. Moss, Elżbieta Kierzek, „Secondary Structure of Subgenomic RNA M of SARS-CoV-2”, Viruses-Basel, 14, art. nr 322, 2022. DOI10.3390/v14020322
Jakub Kaszyński, Paweł Bąkowski, Bartosz Kiedrowski, Łukasz Stołowski, Anna Wasilewska-Burczyk, Kamilla Grzywacz, Tomasz Piontek, „Intra-Articular Injections of Autologous Adipose Tissue or Platelet-Rich Plasma Comparably Improve Clinical and Functional Outcomes in Patients with Knee Osteoarthritis”, Biomedicines, 10, art. nr 684, 2022. DOI10.3390/biomedicines10030684
Francois Dussart, Dorota Jakubczyk, „Biosynthesis of Rubellins in Ramularia collo-cygni—Genetic Basis and Pathway Proposition”, International Journal of Molecular Sciences, 23, art. nr 3475, 2022. DOI10.3390/ijms23073475
Anna Puckowska, Magdalena Gaweł, Marlena Komorowska, Paweł Drożdżal, Aleksandra Arning, Damian Pawelski, Krzysztof Brzeziński, Marta E. Płońska-Brzezińska, „Synthesis and Structural Characterization of Pyridine-2,6-dicarboxamide and Furan-2,5-dicarboxamide Derivatives”, Molecules, 27, art. nr 1819, 2022. DOI10.3390/molecules27061819
Daniel Baranowski, Jerzy Boryski, Tomasz Ostrowski, „7-(β-d-Ribofuranosyl)-3-methylguanine: Synthesis from guanine and comparative multinuclear NMR studies”, Journal of Molecular Structure, 1250, art. nr 131911, 2022. DOI:10.1016/j.molstruc.2021.131911
Malwina Suszyńska, Magdalena Ratajska, Paulina Gałka-Marciniak, Aleksandra Ryszkowska, Dariusz Wydra, Jarosław Dębniak, Anna Jasiak, Bartosz Wasag, Cezary Cybulski, Piotr Kozłowski, „Variant Identification in BARD1, PRDM9, RCC1, and RECQL in Patients with Ovarian Cancer by Targeted Next-generation Sequencing of DNA Pools”, Cancer Prevention Rsearch, 15, 151-160, 2022. DOI10.1158/1940-6207.CAPR-21-0295
Miłosz Ruszkowski, Aleksander Strugała, Paulina Indyka, Guillaume Tresset, Marek Figlerowicz, Anna Urbanowicz, „Cryo-EM reconstructions of BMV-derived virus-like particles reveal assembly defects in the icosahedral lattice structure”, Nanoscale, 14, 3224-3233, 2022. DOI: 10.1039/d1nr05650f
Kaja Gutowska, Dorota Formanowicz, Piotr Formanowicz, „Interrelations between Iron and Vitamin A—Studied Using Systems Approach”, International Journal of Molecular Sciences, 23, art. nr 1189, 2022. DOI 10.3390/ijms23031189
Barbara Seget, Michał Bogdziewicz, Jan Holeksa, Mateusz Ledwoń, Fiona Milne-Rostkowska, Łukasz Piechnik, Alicja Rzepczak, Magdalena Żywiec, „Costs and benefits of masting: economies of scale are not reduced by negative density-dependence in seedling survival in Sorbus aucuparia”, New Phytologist, 233, 1931-1938, 2022. DOI10.1111/nph.17887
Joanna Banasiak, Michał Jasiński, „ATP-binding cassette transporters in nonmodel plants”, New Phytologist, 233, 1597-1612, 2022. DOI10.1111/nph.17779
Piotr Machtel, Anna Wasilewska-Burczyk, Julian Zacharjasz, Kamilla Grzywacz, „PTT-quant: a new method for direct identification and absolute quantification of premature transcription termination events, following the example of bacterial riboswitches”, Applied Microbiology and Biotechnology, 106, 1557–1570, 2022. DOI: 10.1007/s00253-022-11809-1
Marcin Ryczek, Martyna Pluta, Leszek Błaszczyk, Agnieszka Kiliszek, „Overview of Methods for Large-Scale RNA Synthesis”, Applied Sciences-Basel, 12, art. nr 1543, 2022. DOI: 10.3390/app12031543
Paweł Joachimiak, Adam Ciesiołka, Grzegorz Figura, Agnieszka Fiszer, „Implications of Poly(A) Tail Processing in Repeat Expansion Diseases”, Cells, 11, art. nr 677, 2022. DOI:10.3390/cells11040677
Marianna Karwacka, Marta Olejniczak, „Advances in Modeling Polyglutamine Diseases Using Genome Editing Tools”, Cells, 11, art. nr 517, 2022. DOI:10.3390/cells11030517
Aleksandra Filipiak-Duliban, Klaudia Brodaczewska, Arkadiusz Kajdasz, Claudine Kieda, „Spheroid Culture Differentially Affects Cancer Cell Sensitivity to Drugs in Melanoma and RCC Models”, International Journal of Molecular Sciences, 23, art. nr 1166, 2022. DOI:10.3390/ijms23031166
Marta Rybska, Maria Billert, Marek Skrzypski, Magdalena Kubiak, Magdalena Woźna-Wysocka, Anna Łukomska, Tomasz Nowak, Joanna Błaszczyk-Cichoszewska, Małgorzata Pomorska-Mól, Barbara Wąsowska, „Canine cystic endometrial hyperplasia and pyometra may downregulate neuropeptide phoenixin and GPR173 receptor expression”, Animal Reproduction Science, 238, 106931, 2022. DOI:10.1016/j.anireprosci.2022.106931
Kaja Gutowska, Daria Kogut, Małgorzata Kardyńska, Piotr Formanowicz, Jarosław Śmieja, Krzysztof Puszyński, „Petri nets and ODEs as complementary methods for comprehensive analysis on an example of the ATM–p53–NF-κB signaling pathways”, Scientific Reports, 12, art. nr 1135, 2022. DOI:10.1038/s41598-022-04849-0
Bartosz Naskręcki, Mariusz Jaskólski, Zbigniew Dauter, „The Euler characteristic as a basis for teaching topology concepts to crystallographers”, Journal of Applied Crystallography, 55, 154-167, 2022. DOI: 10.1107/S160057672101205X
Tomasz Zok, Natalia Kraszewska, Joanna Miśkiewicz, Paulina Pielacińska, Michał Zurkowski, Marta Szachniuk, „ONQUADRO: a database of experimentally determined quadruplex structures”, Nucleic Acids Research, 50, str. 253-258, 2022. DOI:10.1093/nar/gkab1118
Carmela Ciardullo, Katarzyna Szoltysek, Peixun Zhou, Monika Pietrowska, Łukasz Marczak, Elaine Willmore, Amir Enshaei, Anna Walaszczyk, Jia Yee Ho, Vikki Rand, Scott Marshall, Andrew G. Hall, Christine J. Harrison, Meera Soundararajan, Jeyanthy Eswaran, „Low BACH2 Expression Predicts Adverse Outcome in Chronic Lymphocytic Leukaemia”, Cancers, 14, art. nr 23, 2022. DOI: 10.3390/cancers14010023
Barbara Szutkowska, Klaudia Wieczorek, Ryszard Kierzek, Paweł Zmora, Jake M. Peterson, Walter N. Moss, David H. Mathews, Elżbieta Kierzek, „Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment”, International Journal of Molecular Sciences, 23, art. nr 2452, 2022. DOI10.3390/ijms23052452
Anna J. Jasińska, Ivona Pandrea, Crisitain Apetrei, „CCR5 as a Coreceptor for Human Immunodeficiency Virus and Simian Immunodeficiency Viruses: A Prototypic Love-Hate Affair”, Frontiers in Immunology, 13, art. nr 835994, 2022. DOI:10.3389/fimmu.2022.835994
Agnieszka Żmieńko, Paweł Wojciechowski, Marek Figlerowicz, „Editorial: Resolving the Complexity of Plant Genomes and Transcriptomes With Long Reads”, Frontiers in Plant Science, 12, art. nr 832257, 2022. DOI: 10.3389/fpls.2021.832257
Agnieszka Ruszkowska, Ya Ying Zheng, Song Mao, Miłosz Ruszkowski, Jia Sheng, „Structural Insights Into the 5′UG/3′GU Wobble Tandem in Complex With Ba2+ Cation”, Frontiers in Molecular Biosciences, 8, art. nr 762786, 2022. DOI:10.3389/fmolb.2021.762786
Adam Chyży, Damian Pawelski, Vladyslav Vivcharenko, Agata Przekora, Michael Bratychak, Olena Astakhova, Joanna Breczko, Paweł Drożdżal, Marta E. Płońska-Brzezińska, „Microwave-Assisted Synthesis of Modified Glycidyl Methacrylate–Ethyl Methacrylate Oligomers, Their Physico-Chemical and Biological Characteristics”, Molecules, 27, art. nr 337, 2022. DOI: 10.3390/molecules27020337
Paulina Skupin-Mrugalska, Tomasz Koczorowski, Wojciech Szczolko, Jolanta Długaszewska, Anna Teubert, Hanna Piotrowska-Kempisty, Tomasz Gośliński, Łukasz Sobotta, „Cationic porphyrazines with morpholinoethyl substituents – Syntheses, optical properties, and photocytotoxicities”, Dyes and Pigments, 197, art. nr 109937, 2022. DOI:10.1016/j.dyepig.2021.109937
Miłosz Ruszkowski, Giuseppe Forlani, „Deciphering the structure of Arabidopsis thaliana 5-enol-pyruvyl-shikimate-3-phosphate synthase: An essential step toward the discovery of novel inhibitors to supersede glyphosate”, Computational and Structural
Biotechnology Journal, 20, 1494-1505, 2022. DOI10.1016/j.csbj.2022.03.020
Anjani Kumari, Saam Sadehizadeh, John David Brook, Piotr Kozłowski, Marzena Wojciechowska, „Differential fates of introns in gene expression due to global alternative splicing”, Human Genetics, 141, 31-47, 2022. DOI: 10.1007/s00439-021-02409-6
Tomasz Żok, Natalia Kraszewska, Joanna Miśkiewicz, Paulina Pielacińska, Michał Żurkowski, Marta Szachniuk, „ONQUADRO: a database of experimentally determined quadruplex structures”, Nucleic Acids Research, 50, D253-D258, 2022. DOI10.1093/nar/gkab1118
Marta Przymuszała, Maria Gwit, Jadwiga Waśko, Katarzyna Morańska, Arkadiusz Kajdasz, „Spinal muscular atrophy: Where are we now? Current challenges and high hopes”, Advances in Hygiene and Experimental Medicine, 76, 407-419, 2022. DOI:10.2478/ahem-2022-0030
Tadeusz Kubicki, Kinga Bednarek, Magdalena Kostrzewska-Poczekaj, Magdalena Łuczak, Krzysztof Lewandowski, Lidia Gil, Małgorzata Jarmuz-Szymczak, Dominik Dytfeld, „Bortezomib- and carfilzomib-resistant myeloma cells show increased activity of all three arms of the unfolded protein response”, American Journal of Cancer Research, 12, 3280-3293, 2022.
Barbara Uszczyńska-Ratajczak, Sreedevi Sugunan, Monika Kwiatkowska, Maciej Migdał, Silvia Carbonell-Sala, Anna Sokół, Cecilia L. Winata, Agnieszka Chacińska, „Profiling subcellular localization of nuclear-encoded mitochondrial gene products in zebrafish”, Life Science Alliance, 6, art. nr e202201514, 2022. DOI10.26508/lsa.202201514
Rupak Pal, Indrajit Deb, Joanna Sarzyńska, Ansuman Lahiri, „LNA-induced dynamic stability in a therapeutic aptamer: insights from molecular dynamics simulations”, Journal of Biomolecular Structure and Dynamics, 2022. DOI 10.1080/07391102.2022.2029567

2021

Agnieszka Kiliszek, Leszek Błaszczyk, Magdalena Bejger, Wojciech Rypniewski, „Broken symmetry between RNA enantiomers in a crystal lattice”, Nucleic Acids Research, 49, 12535–12539, 2021. DOI: 10.1093/nar/gkab480
Joanna Kałafut, Arkadiusz Czerwonka, Alinda Anameriç, Alicja Przybyszewska-Podstawka, Julia O. Misiorek, Adolfo Rivero-Müller, Matthias Nees, „Shooting at Moving and Hidden Targets—Tumour Cell Plasticity and the Notch Signalling Pathway in Head and Neck Squamous Cell Carcinomas”, Cancers, 13, art. nr 6219, 2021. DOI:10.3390/cancers13246219
Katarzyna W. Wolińska, Nathan Vannier, Thorsten Thiergart, Brigitte Pickel, Sjoerd Gremmen, Anna Piasecka, Mariola Piślewska-Bednarek, Ryohei Thomas Nakano, Youssef Belkhadir, Paweł Bednarek, Stéphane Hacquard, „Tryptophan metabolism and bacterial commensals prevent fungal dysbiosis in Arabidopsis roots”, PNAS, 118, art. nr e2111521118, 2021. DOI: 10.1073/pnas.2111521118
Marta Maria Nowacka-Chmielewska, Daniela Liśkiewicz, Konstancja Grabowska, Arkadiusz Liśkiewicz, Łukasz Marczak, Anna Wojakowska, Natalia Pondel, Mateusz Grabowski, Jarosław Jerzy Barski, Andrzej Małecki, „Effects of Simultaneous Exposure to a Western Diet and Wheel-Running Training on Brain Energy Metabolism in Female Rats”, Nutrients, 13, art. nr 4242, 2021. DOI: 10.3390/nu13124242
Joanna Banasiak, Tomasz Jamruszka, Jeremy D. Murray, Michał Jasiński, „A roadmap of plant membrane transporters in arbuscular mycorrhizal and legume–rhizobium symbioses”, Plant Physiology, 187, 2071-2091, 2021. DOI: 10.1093/plphys/kiab280
Radosław Mazur, Justyna Maszkowska, Anna Anielska-Mazur, Maciej Garstka, Lidia Polkowska-Kowalczyk, Anna Czajkowska, Agnieszka Żmieńko, Grażyna Dobrowolska, Anna Kulik, „The SnRK2.10 kinase mitigates the adverse effects of salinity by protecting photosynthetic machinery”, Plant Physiology, 187, 2785-2802, 2021. DOI:10.1093/plphys/kiab438
Adam Mieldzioc, Monika Mokrzycka, Aneta Sawikowska, „Identification of Block-Structured Covariance Matrix on an Example of Metabolomic Data”, Separations, 8, art. nr 205, 2021. DOI: 10.3390/separations8110205
Damian M. Janecki, Agata Świątkowska, Joanna Szpotkowska, Anna Urbanowicz, Martyna Kabacińska, Kamil Szpotkowski, Jerzy Ciesiołka, „Poly(C)-binding Protein 2 Regulates the p53 Expression via Interactions with the 5′-Terminal Region of p53 mRNA”, International Journal of Molecular Sciences, 22, art. nr 13306, 2021. DOI:10.3390/ijms222413306
Małgorzata Pietrowska-Borek, Jędrzej Dobrogojski, Anna Maria Wojdyła-Mamoń, Joanna Romanowska, Justyna Gołębiewska, Sławomir Borek, Koichi Murata, Atsushi Ishihara, Maria Ángeles Pedreño, Andrzej Guranowski, „Nucleoside 5′-Phosphoramidates Control the Phenylpropanoid Pathway in Vitis vinifera Suspension-Cultured Cells”, International Journal of Molecular Sciences, 22, art. nr 13567, 2021. DOI: 10.3390/ijms222413567
Weronika Kotkowiak, Zofia Jahnz-Wechmann, Anna Pasternak, „A Comprehensive Analysis of the Thrombin Binding Aptamer Containing Functionalized Pyrrolo-2’-deoxycytidines”, Pharmaceuticals, 14, art. nr 1326, 2021. DOI: 10.3390/ph14121326
Paweł Wojciechowski, Karol Krause, Piotr Łukasiak, Jacek Błażewicz, „The correctness of large scale analysis of genomic data”, Foundations of Computing and Decision Sciences, 46, 423-436, 2021. DOI: 10.2478/fcds-2021-0024
Jiaxin Li, Yan Lan, Feng Chen, Xin Han, Jacek Błażewicz, „A Fast Algorithm for Knapsack Problem with Conflict Graph”, Asia-Pacific Journal of Operational Research, 38, art. nr 2150010, 2021. DOI: 10.1142/S021759592150010X

13. Paweł M. Świtonski, Joe R. Delaney, Luke C. Bartelt, Chenchen Niu, Maria Ramos-Zapatero, Nathanael J. Spann, Akshay Alaghatta, Toby Chen, Emily N. Griffin, Jaidev Bapat, Bryce L. Sopher, Albert R. La Spada, „Altered H3 histone acetylation impairs high-fidelity DNA repair to promote cerebellar degeneration in spinocerebellar ataxia type 7”, Cell Reports, 37, art. nr 110062, 2021. DOI: 10.1016/j.celrep.2021.110062

14. Justyna E. Gołębiewska, Anna Wardowska, Monika Pietrowska, Anna Wojakowska, Alicja Dębska-Ślizień, „Small Extracellular Vesicles in Transplant Rejection”, Cells, 10, art. nr 2989, 2021. DOI: 10.3390/cells10112989

15. Klaudia Stempa, Dominika Wokołorczyk, Wojciech Kluźniak, Emilia Rogoża-Janiszewska, Karolina Malińska, Helena Rudnicka, Tomasz Huzarski, Jacek Gronwald, Katarzyna Gliniewicz, Tadeusz Dębnia, Anna Jakubowska, Marcin Lener, Joanna Tomiczek-Szwiec, Paweł Domagała, Malwina Suszyńska, Piotr Kozłowski, Tomasz Kluz, Mariusz Naczk, Jan Lubiński, Steven A. Narod, „Do BARD1 Mutations Confer an Elevated Risk of Prostate Cancer?”, Cancers, 13, 5464, 2021. DOI: 10.3390/cancers13215464
Weronika Porolnik, Monika Kasprzycka, Anna Teubert, Jarosław Piskorz, „Serendipitous synthesis of unsymmetrical porphyrazine: Incomplete transesterification during macrocyclization”, Inorganic Chemistry Communications, 133, 108953, 2021. DOI:
10.1016/j.inoche.2021.108953
Wanda Biała-Leonhard, Laura Zanin, Stefano Gottardi, Rita de Brito Francisco, Silvia Venuti, Fabio Valentinuzzi, Tanja Mimmo, Stefano Cesco, Barbara Bassin, Enrico Martinoia, Roberto Pinton, Michał Jasiński, Nicola Tomasi, „Identification of an Isoflavonoid Transporter Required for the Nodule Establishment of the Rhizobium-Fabaceae Symbiotic Interaction”, Frontiers in Plant Science, 12, 758213, 2021. DOI: 10.3389/fpls.2021.758213
Damian Pawelski, Alicja Walewska, Sylwia Księżak, Dariusz Średzinski, Piotr Radziwon, Marcin Moniuszko, Ramesh Gandusekar, Andrzej Eljaszewicz, Ryszard Laźny, Krzysztof Brzeziński, Marta E. Płońska-Brzezińska, „Monocarbonyl Analogs of Curcumin Based on the Pseudopelletierine Scaffold: Synthesis and Anti-Inflammatory Activity”, International Journal of Molecular Sciences, 22, art. nr 11384, 2021. DOI:10.3390/ijms222111384
David M. Carter, Edgar Specker, Piotr H. Małecki, Jessica Przygoda, Krystyna Dudaniec, Manfred S. Weiss, Udo Heinemann, Marc Nazaré, Ulrich Gohlke, „Enhanced Properties of a Benzimidazole Benzylpyrazole Lysine Demethylase Inhibitor: Mechanism-of-Action, Binding Site Analysis, and Activity in Cellular Models of Prostate Cancer”, Journal of Medicinal Chemistry, 64, 14266–14282, 2021. DOI: 10.1021/acs.jmedchem.1c00693
Ewelina M. Małecka, Daria Sobańska, Mikołaj Olejniczak, „Bacterial Chaperone Protein Hfq Facilitates the Annealing of Sponge RNAs to Small Regulatory RNAs”, Journal of Molecular Biology, 433, art. nr 167291, 2021. DOI: 10.1016/j.jmb.2021.167291
Katarzyna Marciniak-Łukasiak, Anna Żbikowska, Milena Kupiec, Monika Brzezińska, Iwona Szymańska, Piotr Łukasiak, „The Influence of Rice Protein, Hemp Protein and Transglutaminase Addition on the Quality of Instant Fried Noodles”, Applied Sciences-Basel, 11, art. nr 9070, 2021. DOI: 10.3390/app11199070
Katarzyna Fiedorowicz, Weronika Wargocka-Matuszewska, Karolina A. Ambrożkiewicz, Anna Rugowska, Łukasz Cheda, Michał Fiedorowicz, Agnieszka Zimna, Monika Drabik, Szymon Borkowski, Maciej Świątkiewicz, Piotr Bogorodzki, Paweł Grieb, Paulina Hamankiewicz, Tomasz J. Kolanowski, Natalia Rozwadowska, Urszula Kozłowska, Aleksandra Klimczak, Jerzy Kolasiński, Zbigniew Rogulski, Maciej Kurpisz, „Molecular Imaging of Human Skeletal Myoblasts (huSKM) in Mouse Post-Infarction Myocardium”, International Journal of Molecular Sciences, 22, art. nr 10885, 2021. DOI:10.3390/ijms221910885
Dorota Formanowicz, Kaja Gutowska, Bartłomiej Szawulak, Piotr Formanowicz, „The Crosstalk between SARS-CoV-2 Infection and the RAA System in Essential Hypertension—Analyses Using Systems Approach”, International Journal of Molecular Sciences, 22, art. nr 10518, 2021. DOI: 10.3390/ijms221910518
Dorota Zielińska, Katarzyna Marciniak-Łukasiak, Marcelina Karbowiak, Piotr Łukasiak, „Effects of Fructose and Oligofructose Addition on Milk Fermentation Using Novel Lactobacillus Cultures to Obtain High-Quality Yogurt-like Products”, Molecules, 26, art. nr 5730, 2021. DOI:10.3390/molecules26195730
Richard Venz, Tina Pekec, Iskra Katic, Rafał Ciosk, Collin Yvès Ewald, „End-of-life targeted degradation of DAF-2 insulin/IGF-1 receptor promotes longevity free from growth-related pathologies”, Elife, 10, art. nr e71335, 2021. DOI: 10.7554/eLife.71335
Paulina Żydowicz-Machtel, Mariola Dutkiewicz, Agata Świątkowska, Dorota Gurda-Woźna, Jerzy Ciesiołka, „Translation of human Δ133p53 mRNA and its targeting by antisense oligonucleotides complementary to the 5′-terminal region of this mRNA”, PLoS One, 16, art. nr e0256938, 2021. DOI: 10.1371/journal.pone.0256938
Mariusz Popenda, Tomasz Zok, Joanna Sarzyńska, Agnieszka Korpeta, Ryszard W. Adamiak, Maciej Antczak, Marta Szachniuk, „Entanglements of structure elements revealed in RNA 3D models”, Nucleic Acids Research, 49, 9625-9632, 2021. DOI:10.1093/nar/gkab716
Linh H. Tran, Anna Urbanowicz, Michał Jasiński, Mariusz Jaskólski, Miłosz Ruszkowski, „3D Domain Swapping Dimerization of the Receiver Domain of Cytokinin Receptor CRE1 From Arabidopsis thaliana and Medicago truncatula”, Frontiers in Plant Science, 12, art. nr 756341, 2021. DOI: 10.3389/fpls.2021.756341
David M. Carter, Edgar Specker, Piotr H. Małecki, Jessica Przygodda, Krystyna Dudaniec, Manfred S. Weiss, Udo Heinemann, Marc Nazaré, Ulrich Gohlke, „Enhanced Properties of a Benzimidazole Benzylpyrazole Lysine Demethylase Inhibitor: Mechanism-of-Action, Binding Site Analysis, and Activity in Cellular Models of Prostate Cancer”, Journal of Medicinal Chemistry, 64, 14266–14282, 2021. DOI: 10.1021/acs.jmedchem.1c00693
Jacek Błażewicz, Benjamin Moseley, Erwin Pesch, Denis Trystram, Guochuan Zhang, „New Perspectives in Scheduling Theory”, 24, 455-457, 2021. DOI: 10.1007/s10951-021-00693-8
Zohreh Ghanbarzadeh, Hajar Zamani, Sasan Mohsenzadeh, Łukasz Marczak, Maciej Stobiecki, Mehdi Zarei, „Rhizosphere symbionts improve water stress tolerance in Moldavian balm through modulation of osmolytes”, Rhizosphere, 19, art. nr 100367, 2021. DOI: 10.1016/j.rhisph.2021.100367
Patrycja Horbowicz-Drożdżal, Karol Kamel, Sebastian Kmiecik, Lidia Borkiewicz, Nilgun E. Tumer, Pang-Chui Shaw, Marek Tchórzewski, Przemysław Grela, „Phosphorylation of the conserved C-terminal domain of ribosomal P-proteins impairs the mode of interaction with plant toxins”, FEBS Letters, 595, 2221-2236, 2021. DOI: 10.1002/1873-3468.14170
Weronika Kotkowiak, Anna Pasternak, „Beyond G-Quadruplexes-The Effect of Junction with Additional Structural Motifs on Aptamers Properties”, International Journal of Molecular Sciences, 22, art. nr 9948, 2021. DOI: 10.3390/ijms22189948
Paweł Szczeblewski, Justyna Górska, Witold Andrałojć, Patryk Janke, Karolina Wąsik, Tomasz Laskowski, „Iso-Partricin, an Aromatic Analogue of Amphotericin B: How Shining Light on Old Drugs Might Help Create New Ones”, Antibiotics – Basel, 10, art. nr 1102, 2021. DOI: 10.3390/antibiotics10091102
Paweł Szczeblewski, Witold Andrałojć, Justyna Polit, Aneta Żabka, Konrad Winnicki, Tomasz Laskowski, „Ipertrofan Revisited—The Proposal of the Complete Stereochemistry of Mepartricin A and B”, Molecules, 26, art. nr 5533, 2021. DOI:10.3390/molecules26185533
Dorota Gudanis, Karolina Zielińska, Daniel Baranowski, Ryszard Kierzek, Piotr Kozłowski Zofia Gdaniec, „Impact of a Single Nucleotide Change or Non-Nucleoside Modifications in G-Rich Region on the Quadruplex–Duplex Hybrid Formation”, Biomolecules, 11, art. nr 1236, 2021. DOI: 10.3390/biom11081236
Donata Pluskota-Karwatka, Marcin Hoffmann, Jan Barciszewski, „Reducing SARS-CoV-2 pathological protein activity with small molecules”, Journal of Pharmaceutical Analysis, 11, 383-397, 2021. DOI: 10.1016/j.jpha.2021.03.012
Agnieszka Szczepańska, Marta Wojnicka, Anna Kurzyńska-Kokorniak, „The Significance of the DUF283 Domain for the Activity of Human Ribonuclease Dicer”, International Journal of Molecular Sciences, 22, art. nr 8690, 2021. DOI: 10.3390/ijms22168690
Julita Gumna, Angelika Andrzejewska-Romanowska, David J. Garfinkel, Katarzyna Pachulska-Wieczorek, „RNA Binding Properties of the Ty1 LTR-Retrotransposon Gag Protein”, International Journal of Molecular Sciences, 22, art. nr 9103, 2021. DOI:10.3390/ijms22169103
Arkadiusz D. Liśkiewicz, Daniela Liśkiewicz, Łukasz Marczak, Marta Przybyła, Konstancja Grabowska, Sebastian Student, Magdalena Dębiec, Anna Sługocka, Joanna Lewin-Kowalik, „Obesity-associated deterioration of the hippocampus is partially restored after weight loss”, Brain, Behavior, and Immunity, 96, 212-226, 2021. DOI: 10.1016/j.bbi.2021.05.030
Agnieszka Chełkowska-Pauszek, Jan Grzegorz Kosiński, Klementyna Marciniak, Marta Wysocka, Kamilla Bąkowska-Żywicka, Marek Żywicki, „The Role of RNA Secondary Structure in Regulation of Gene Expression in Bacteria”, International Journal of Molecular Sciences, 22, art. nr 7845, 2021. DOI: 10.3390/ijms22157845
Giuseppe Forlani, Bogusław Nocek, Miłosz Ruszkowski, „Peculiar substrate specificity of δ1‑pyrroline‑5‑carboxylate reductase in the obligately fermentative bacterium Zymomonas mobilis”, Molecular Biology Reports, 48, 6205-6211, 2021. DOI:10.1007/s11033-021-06591-8
Adam Czyżewski, Faustyna Krawiec, Dariusz Brzeziński, Przemysław Jerzy Porębski, Władek Minor, „Detecting anomalies in X-ray diffraction images using convolutional neural networks”, Expert Systems with Applications, 174, art. nr 114740, 2021. DOI:10.1016/j.eswa.2021.114740
Dariusz Brzeziński, Przemysław J. Porębski, Marcin Kowiel, Joanna M. Macnar, Władek Minor, „Recognizing and validating ligands with CheckMyBlob”, Nucleic Acids Research, 49, W86-W92, 2021. DOI: 10.1093/nar/gkab296
Luiza Handschuh, Paweł Wojciechowski, Maciej Kaźmierczak, Krzysztof Lewandowski, „Transcript-Level Dysregulation of BCL2 Family Genes in Acute Myeloblastic Leukemia”, Cancers, 13, art. nr 3175, 2021. DOI: 10.3390/cancers13133175
Jun-Jun Liu, Humberto Fernandes, Arezoo Zamany, Michał Sikorski, Mariusz Jaskólski, Richard A. Sniezko, „In-vitro anti-fungal assay and association analysis reveal a role for the Pinus monticola PR10 gene (PmPR10-3.1) in quantitative disease resistance to white pine blister rust”, Genome, 64, 693-704, 2021. DOI: 10.1139/gen-2020-0080
Ewa Jończyk-Matysiak, Barbara Owczarek, Ewa Popiela, Kinga Świtała-Jeleń, Paweł Migdał, Martyna Cieślik, Norbert Łodej, Dominika Kula, Joanna Neuberg, Katarzyna Hodyra- Stefaniak, Marta Kaszowska, Filip Orwat, Natalia Bagińska, Anna Mucha, Agnieszka Belter, Mirosława Skupińska, Barbara Bubak, Wojciech Fortuna, Sławomir Letkiewicz, Paweł Chorbiński, Beata Weber-Dąbrowska, Adam Roman, Andrzej Górski, „Isolation and Characterization of Phages Active against Paenibacillus larvae Causing American Foulbrood in Honeybees in Poland”, Viruses – Basel, 13, art. nr 1217, 2021. DOI:10.3390/v13071217
Urszula Kozłowska, Aleksandra Klimczak, Karolina Anna Bednarowicz, Tomasz Zalewski, Natalia Rozwadowska, Katarzyna Chojnacka, Stefan Jurga, Eytan R. Barnea, Maciej K. Kurpisz, „Assessment of Immunological Potential of Glial Restricted Progenitor Graft In Vivo—Is Immunosuppression Mandatory?”, Cells, 10, art. nr 1804, 2021. DOI:10.3390/cells10071804
Wladek Minor, Mariusz Jaskólski, Seamus J. Martin, Zbigniew Dauter, „Dr. Alexander Wlodawer—celebrating five decades of service to the structural biology community”, FEBS Journal, 288, 4160-4164, 2021. DOI: 10.1111/febs.16064
Paweł Śledziński, Magdalena Dąbrowska, Mateusz Nowaczyk, Marta Olejniczak, „Paving the way towards precise and safe CRISPR genome editing”, Biotechnology Advances, 49, art. nr 107737, 2021. DOI: 10.1016/j.biotechadv.2021.107737
Karolina Świtońska-Kurkowska, Bart Krist, Joanna Maria Delimata, Maciej Figiel, „Juvenile Huntington’s Disease and Other PolyQ diseases, Update on Neurodevelopmental Character and Comparative Bioinformatic Review of Transcriptomic Data”, Frontiers in Cell and Developmental Biology, 9, art. nr 642773, 2021. DOI: 10.3389/fcell.2021.642773
Joanna Tracz, Magdalena Łuczak, „Applying Proteomics and Integrative “Omics” Strategies to Decipher the Chronic Kidney Disease-Related Atherosclerosis”, International Journal of Molecular Sciences, 22, art. nr 7492, 2021. DOI: 10.3390/ijms22147492
Anna Kotowska-Zimmer, Marianna Pewińska, Marta Olejniczak, „Artificial miRNAs as therapeutic tools: Challenges and opportunities”, Wiley Interdisciplinary Reviews, 12, art. nr e1640, 2021. DOI: 10.1002/wrna.1640
Anna F. Fusco, Logan A. Pucci, Paweł M. Świtoński, Debolina D. Biswas, Angela L. McCall, Amanda F. Kahn, Justin S. Dhindsa, Laura M. Strickland, Albert R. La Spada, Mai K. El Mallah, „Respiratory dysfunction in a mouse model of spinocerebellar ataxia type 7”, Disease Models & Mechanisms, 14, art. nr dmm048893, 2021. DOI:10.1242/dmm.048893
Joanna I. Loch, Mariusz Jaskólski, „Structural and biophysical aspects of L-asparaginases: a growing family with amazing diversity”, IUCrJ, 8, 514-531, 2021. DOI:10.1107/S2052252521006011
Bartosz Naskręcki, Zbigniew Dauter, Mariusz Jaskólski, „A topological proof of the modified Euler characteristic based on the orbifold concept”, Acta Crystallographica Section A – Foundations and Advances, 77, 317-326, 2021. DOI:10.1107/S2053273321004320

57. Daniela Liśkiewicz, Arkadiusz Liśkiewicz, Mateusz Grabowski, Marta Maria Nowacka-Chmielewska, Konstancja Jabłońska, Anna Wojakowska, Łukasz Marczak, Jarosław J. Barski, Andrzej Małecki, „Upregulation of hepatic autophagy under nutritional ketosis”, Journal of Nutritional Biochemistry, 93, art. nr 108620, 2021. DOI:10.1016/j.jnutbio.2021.108620
Kalina Wiatr, Łukasz Marczak, Jean-Baptiste Pérot, Emmanuel Brouillet, Julien Flament, Maciej Figiel, „Broad Influence of Mutant Ataxin-3 on the Proteome of the Adult Brain, Young Neurons, and Axons Reveals Central Molecular Processes and Biomarkers in SCA3/MJD Using Knock-In Mouse Model”, Frontiers in Molecular Neuroscience, 14, art. nr658339, 2021. DOI: 10.3389/fnmol.2021.658339
Joanna Tracz, Luiza Handschuh, Maciej Lalowski, Łukasz Marczak, Katarzyna Kostka-Jeziorny, Bartłomiej Perek, Maria Wanic-Kossowska, Alina Podkowińska, Andrzej Tykarski, Dorota Formanowicz, Magdalena Łuczak, „Proteomic Profiling of Leukocytes Reveals Dysregulation of Adhesion and Integrin Proteins in Chronic Kidney Disease-Related Atherosclerosis”, Journal of Proteome Research, 20, 3053-3067, 2021. DOI:10.1021/acs.jproteome.0c00883
Marta Orlicka-Płocka, Agnieszka Fedoruk-Wyszomirska, Dorota Gurda-Woźna, Paweł Pawelczak, Patrycja Krawczyk, Małgorzata Giel-Pietraszuk, Grzegorz Framski, Tomasz Ostrowski, Eliza Wyszko, „Implications of Oxidative Stress in Glioblastoma Multiforme Following Treatment with Purine Derivatives”, Antioxidants, 10, art. nr 950, 2021. DOI:10.3390/antiox10060950
Dagmara Baraniak, Jerzy Boryski, „Triazole-Modified Nucleic Acids for the Application in Bioorganic and Medicinal Chemistry”, Biomedicines, 9, art. nr 628, 2021. DOI:10.3390/biomedicines9060628
Piotr Duchnowicz, Radosław Pilarski, Jaromir Michałowicz, Bożena Bukowska, „Changes in Human Erythrocyte Membrane Exposed to Aqueous and Ethanolic Extracts from Uncaria tomentosa”, Molecules, 26, art. nr 3189, 2021. DOI: 10.3390/molecules26113189
Antoine L. Harfouche, Vasiliki Petousi, Richard Meilan, Jeremy Sweet, Tomasz Twardowski, Arie Altman, „Promoting Ethically Responsible Use of Agricultural Biotechnology”, Trends in Plant Science, 26, 546-559, 2021. DOI:10.1016/j.tplants.2020.12.015
Dagny Lorent, Rafał Nowak, Carolina Roxo, Elżbieta Lenartowicz, Aleksandra Makarewicz, Bartosz Zaremba, Szymon Nowak, Łukasz Kuszel, Jerzy Stefaniak, Ryszard Kierzek, Paweł Zmora, „Prevalence of Anti-SARS-CoV-2 Antibodies in Poznań, Poland, after the First Wave of the COVID-19 Pandemic”, Vaccines, 9, art. nr 541, 2021. DOI:10.3390/vaccines9060541
Marta Rybska, Magdalena Woźna-Wysocka, Barbara Wąsowska, Marek Skrzypski, Magdalena Kubiak, Beata Błaszak, Anna Łukomska, Tomasz Nowak, Jędrzej M. Jaśkowski, „Expression of Transforming Growth Factor Beta Isoforms in Canine Endometrium with Cystic Endometrial Hyperplasia–Pyometra Complex”, Animals, 11, art. nr 1844, 2021. DOI: 10.3390/ani11061844
Ryosuke Sugiyama, Rui Li, Ayuko Kuwahara, Ryo Nakabayashi, Naoyuki Sotta, Tetsuya Mori, Takehiro Ito, Naoko Ohkama-Ohtsu, Toru Fujiwara, Kazuki Saito, Ryohei Thomas Nakano, Paweł Bednarek, Masami Yokota Hirai, „Retrograde sulfur flow from glucosinolates to cysteine in Arabidopsis thaliana”, Proceedings of the National Academy of Sciences of the United States of America, 118, art. nr e2017890118, 2021. DOI:10.1073/pnas.2017890118
Kamila Romanowska, Agnieszka A. Rawłuszko-Wieczorek, Łukasz Marczak, Agnieszka Kosińska, Wiktoria M. Suchorska, Wojciech Golusiński, „The m6A RNA Modification Quantity and mRNA Expression Level of RNA Methylation-Related Genes in Head and Neck Squamous Cell Carcinoma Cell Lines and Patients”, Biomolecules, 11, art. nr 908, 2021. DOI: 10.3390/biom11060908
Thomas M. Winkelmüller, Frederickson Entila, Shajahan Anver, Anna Piasecka, Baoxing Song, Eik Dahms, Hitoshi Sakakibara, Xiangchao Gan, Karolina Kułak, Aneta Sawikowska, Paweł Krajewski, Miltos Tsiantis, Ruben Garrido-Oter, Kenji Fukushima, Paul Schulze-Lefert, Stefan Laurent, Paweł Bednarek, Kenichi Tsuda, „Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species”, Plant Cell, 33, 1863-1887, 2021. DOI: 10.1093/plcell/koab073
Marek Kazimierczyk, Jan Wrzesiński, „Long Non-Coding RNA Epigenetics”, International Journal of Molecular Sciences, 22, art. nr 6166, 2021. DOI: 10.3390/ijms22116166
Edyta Kościańska, Emilia Kozłowska, Agnieszka Fiszer, „Regulatory Potential of Competing Endogenous RNAs in Myotonic Dystrophies”, International Journal of Molecular Sciences, 22, art. nr 6089, 2021. DOI: 10.3390/ijms22116089
Vilbert Sikorski, Pasi Karjalainen, Daria Blokhina, Kati Oksaharju, Jahangir Khan, Shintaro Katayama, Helena Rajala, Satu Suihko, Suvi Tuohinen, Kari Teittinen, Annu Nummi, Antti Nykänen, Arda Eskin, Christoffer Stark, Fausto Biancari, Jan Kiss, Jarmo Simpanen, Jussi Ropponen, Karl Lemström, Kimmo Savinainen, Maciej Lalowski, Markku Kaarne, Mikko Jormalainen, Outi Elomaa, Pertti Koivisto, Peter Raivio, Pia Bäckströ, Sebastian Dahlbacka, Simo Syrjälä, Tiina Vainikka, Tommi Vähäsilta, Nurcan Tuncbag, Mati Karelson, Eero Mervaala, Tatu Juvonen, Mika Laine, Jari Laurikka, Antti Vento, Esko Kankuri, „Epitranscriptomics of Ischemic Heart Disease—The IHD-EPITRAN Study Design and Objectives”, International Journal of Molecular Sciences, 22, art. nr 6630, 2021. DOI:10.3390/ijms22126630
Maria Tomaszewska, Marta Szabat, Karolina Zielińska, Ryszard Kierzek, „Identification and Structural Aspects of G-Quadruplex-Forming Sequences from the Influenza A Virus Genome”, International Journal of Molecular Sciences, 22, art. nr 6031, 2021. DOI:10.3390/ijms22116031
Marta Sikora, Hieronim Jakubowski, „Changes in redox plasma proteome of Pon1−/− mice are exacerbated by a hyperhomocysteinemic diet”, Free Radical Biology and Medicine, 169, 169-180, 2021. DOI: 10.1016/j.freeradbiomed.2021.03.042
Paweł Drożdżal, Mirosław Gilski, Mariusz Jaskólski, „Crystal structure of Z-DNA in complex with the polyamine putrescine and potassium cations at ultra -high resolution”, Acta Crystallographica Section B – Structural Science, Crystal Engineering and Materials,
77, 331-338, 2021. DOI: 10.1107/S2052520621002663
Julian Zacharjasz, Anna M. Mleczko, Paweł Bąkowski, Tomasz Piontek, Kamilla Bąkowska-Żywicka, „Small Noncoding RNAs in Knee Osteoarthritis: The Role of MicroRNAs and tRNA-Derived Fragments”, International Journal of Molecular Sciences, 22, art. nr 5711, 2021. DOI: 10.3390/ijms22115711
Emilia Frydrych-Tomczak, Tomasz Ratajczak, Łukasz Kościński, Agnieszka Ranecka, Natalia Michalak, Tadeusz Luciński, Hieronim Maciejewski, Stefan Jurga, Mikołaj Lewandowski, Marcin K. Chmielewski, „Structure and Oligonucleotide Binding Efficiency of Differently Prepared Click Chemistry-Type DNA Microarray Slides Based on 3-Azidopropyltrimethoxysilane”, Materials, 14, art. nr 2855, 2021. DOI:10.3390/ma14112855
Barbara Wrzesińska, Agnieszka Żmieńko, Lam Dai Vu, Ive De Smet , Aleksandra Obrępalska-Stęplowska, „Multiple cellular compartments engagement in Nicotiana benthamiana-peanut stunt virus-satRNA interactions revealed by systems biology approach”, Plant Cell Reports, 40, Swat1247–1267, 2021. DOI: 10.1007/s00299-021-02706-4
Dorota Butkiewicz, Małgorzata Krześniak, Agnieszka Gdowicz-Kłosok, Monika Giglok, Małgorzata Marszałek-Zeńczak, Rafał Suwiński, „Polymorphisms in EGFR Gene Predict Clinical Outcome in Unresectable Non-Small Cell Lung Cancer Treated with Radiotherapy and Platinum-Based Chemoradiotherapy”, International Journal of Molecular Sciences, 22, art. nr 5605, 2021. DOI: 10.3390/ijms22115605
Magdalena Bejger, Paulina Fortuna, Magda Drewniak-Świtalska, Jacek Plewka, Wojciech Rypniewski, Łukasz Berlicki, „A computationally designed β-amino acid-containing miniprotein”, Chemical Communications, 57, 6015-6018, 2021. DOI: 10.1039/d1cc02192c
Sara Blicharz, Gerrit T.S. Beemster, Laura Ragni, Nuria De Diego, Lukas Spíchal, Alba E. Hernándiz, Łukasz Marczak, Marcin Olszak, Dawid Perlikowski, Arkadiusz Kosmala, Robert Malinowski, „Phloem exudate metabolic content reflects the response to water-deficit stress in pea plants (Pisum sativum L.)”, Plant Journal, 106, 1338-1355, 2021. DOI:10.1111/tpj.15240
Joanna Miśkiewicz, Joanna Sarzyńska, Marta Szachniuk, „How bioinformatics resources work with G4 RNAs”, Briefings in Bioinformatics, 22, art. nr bbaa201, 2021. DOI:10.1093/bib/bbaa201
Henning Frerigmann, Markus Piotrowski, René Lemke, Paweł Bednarek, Paul Schulze-Lefert, „A Network of Phosphate Starvation and Immune-Related Signaling and Metabolic Pathways Controls the Interaction between Arabidopsis thaliana and the Beneficial Fungus Colletotrichum tofieldiae”, Molecular Plant – Microbe Interactions, 34, 560-570, DOI:10.1094/MPMI-08-20-0233-R
Aleksandra Majchrzak-Celińska, Julia O. Misiorek, Nastassia Kruhlenia, Łukasz Przybył, Robert Kleszcz, Katarzyna Rolle, Violetta Krajka-Kuźniak, „COXIBs and 2,5-dimethylcelecoxib counteract the hyperactivated Wnt/β-catenin pathway and COX-2/PGE2/EP4 signaling in glioblastoma cells”, BMC Cancer, 21, art. nr 493, 2021. DOI:10.1186/s12885-021-08164-1
Wojciech Witek, Joanna Śliwiak, Miłosz Ruszkowski, „Structural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plants”, Scientific Reports, 11, art. nr 9647, 2021. DOI:10.1038/s41598-021-88920-2
Łukasz Marczak, Jakub Idkowiak, Joanna Tracz, Maciej Stobiecki, Bartłomiej Perek, Katarzyna Kostka-Jeziorny, Andrzej Tykarski, Maria Wanic-Kossowska, Marcin Borowski, Marcin Osuch, Dorota Formanowicz, Magdalena Łuczak, „Mass Spectrometry-Based Lipidomics Reveals Differential Changes in the Accumulated Lipid Classes in Chronic Kidney Disease”, Metabolities, 11, art. nr 275, 2021. DOI: 10.3390/metabo11050275
Satenik Mkrtchyan, Michał Jakubczyk, Suneel Lanka, Michael Pittelkow, Viktor O. Iaroshenko, „Cu-Catalyzed Arylation of Bromo-Difluoro-Acetamides by Aryl Boronic Acids, Aryl Trialkoxysilanes and Dimethyl-Aryl-Sulfonium Salts: New Entries to Aromatic Amides”, Molecules, 26, art. nr 2957, 2021. DOI: 10.3390/molecules26102957
Carolina Roxo, Weronika Kotkowiak, Anna Pasternak, „G4 Matters—The Influence of G-Quadruplex Structural Elements on the Antiproliferative Properties of G-Rich Oligonucleotides”, International Journal of Molecular Sciences, 22, art. nr 4941, 2021. DOI:10.3390/ijms22094941
Piotr Maj, Adam Jarmuła, Piotr Wilk, Małgorzata Prokopowicz, Wojciech Rypniewski, Zbigniew Zieliński, Anna Dowierciał, Agnieszka Bzowska, Wojciech Rode, „Molecular Mechanism of Thymidylate Synthase Inhibition by N4-Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies”, International Journal of Molecular Sciences, 22, art. nr 4758, 2021. DOI: 10.3390/ijms22094758
Agnieszka Szuba, Łukasz Marczak, Rafał Kozłowski, „Pb Stress and Ectomycorrhizas: Strong Protective Proteomic Responses in Poplar Roots Inoculated with Paxillus involutus Isolate and Characterized by Low Root Colonization Intensity”, International Journal of Molecular Sciences, 22, art. nr 4300, 2021. DOI: 10.3390/ijms22094300
Marek Grabowski, Joanna M. Macnar, Marcin Cymborowski, David R. Cooper, Ivan G. Shabalin, Mirosław Gilski, Dariusz Brzeziński, Marcin Kowiel, Zbigniew Dauter, Bernhard Rupp, Alexander Wlodawer, Mariusz Jaskólski, Wladek Minor, „Rapid response to emerging biomedical challenges and threats”, IUCrJ, 8, 395-407, 2021. DOI:10.1107/S2052252521003018
Alejandra Bernardi, Dino Gobelli, Julia Serna, Paulina Nawrocka, Gabriel March-Rossello, Antonio Orduna, Piotr Kozłowski, Maria Simarro, Miguel A. de la Fuente, „Novel fluorescent-based reporter cell line engineered for monitoring homologous recombination events”, PLoS One, 16, art. nr e0237413, 2021. DOI: 10.1371/journal.pone.0237413
Magdalena Woźna-Wysocka, Marta Rybska, Beata Błaszak, Bartłomiej M. Jaśkowski, Magdalena Kulus, Jędrzej M. Jaśkowski, „Morphological changes in bitches endometrium affected by cystic endometrial hyperplasia - pyometra complex – the value of histopathological examination”, BMC Veterinary Research, 17, art. nr 174, 2021. DOI:10.1186/s12917-021-02875-0
Nicoletta Makowska, Katarzyna Bresa, Ryszard Koczura, Anna Philips, Katarzyna Nowis, Joanna Mokracka, „Urban wastewater as a conduit for pathogenic Gram-positive bacteria and genes encoding resistance to β-lactams and glycopeptides”, Science of the Total Environment, 765, art. nr 144176, 2021. DOI: 10.1016/j.scitotenv.2020.144176
Marta Pastorczyk-Szlenkier, Paweł Bednarek, „UGT76B1 controls the growth-immunity trade-off during systemic acquired resistance”, Molecular Plant, 14, 544-546, 2021. DOI:10.1016/j.molp.2021.03.012
Przemysław Makarowicz, Tomasz Goslar, Jacek Górski, Halina Taras, Anita Szczepanek, Łukasz Pospieszny, Marina O. Jagodinska, Vasyl Ilchyshyn, Piotr Włodarczak, Anna Juras, Maciej Chyleński, Przemysław Muzolf, Anna Lasota-Kuś, Irena Wójcik, Andrzej Matoga, Marek Nowak, Marcin M. Przybyła, Małgorzata Marcinkowska-Swojak, Marek Figlerowicz, Ryszard Grygiel, Janusz Czebreszuk, Igor T. Kochkin, „The Absolute Chronology of Collective Burials from the 2nd Millenium BC in East Central Europe”, Radiocarbon, 63, 669-692, 2021. DOI: 10.1017/RDC.2020.139
Paweł Bąkowski, Kinga Ciemniewska-Gorzela, Kamilla Bąkowska-Żywicka, Łukasz Stołowski, Tomasz Piontek, „Similar Outcomes and Satisfaction of the Proprioceptive versus Standard Training on the Knee Function and Proprioception, Following the Anterior Cruciate Ligament Reconstruction”, Applied Sciences, 11, art. nr 3494, 2021. DOI:10.3390/app11083494
Aneta Sawikowska, Anna Piasecka, Piotr Kachlicki, Paweł Krajewski, „Separation of Chromatographic Co-Eluted Compounds by Clustering and by Functional Data Analysis”, Metabolities, 11, art. nr 214, 2021. DOI: 10.3390/metabo11040214
Tomasz Koczorowski, Wojciech Szczolko, Anna Teubert, Tomasz Gośliński, „Sulfanyl Porphyrazines with Morpholinylethyl Periphery—Synthesis, Electrochemistry, and Photocatalytic Studies after Deposition on Titanium(IV) Oxide P25 Nanoparticles”, Molecules, 26, art. nr 2280, 2021. DOI: 10.3390/molecules26082280
Katarzyna Zaorska, Piotr Zawierucha, Monika Świerczewska, Danuta Ostalska-Nowicka, Jacek Zachwieja, Michał Nowicki, „Prediction of steroid resistance and steroid dependence in nephrotic syndrome children”, Journal of Translational Medicine, 19, art. nr 130, 2021. DOI: 10.1186/s12967-021-02790-w
Emily Golden, Rabab Rashwan, Eleanor A. Woodward, Agustin Sgro, Edina Wang, Anabel Sorolla, Charlene Waryah, Wan Jun Tie, Elisabet Cuyàs, Magdalena Ratajska, Iwona Kardaś, Piotr Kozłowski, Elizabeth K. M. Johnstone, Heng B. See, Ciara Duffy, Jeremy Parry, Kim A. Lagerborg, Piotr Czapiewski, Javier A. Menendez, Adam Gorczyński, Bartosz Wasag, Kevin D. G. Pfleger, Christina Curtis, Bum-Kyu Lee, Jonghwan Kim, Joseph Cursons, Nathan J. Pavlos, Wojciech Biernat, Mohit Jain, Andrew J. Woo, Andrew Redfern, Pilar Blancafort, „The oncogene AAMDC links PI3K AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer”, Nature Communications, 12, art. nr 1920, 2021. DOI: 10.1038/s41467-021-22101-7
Alfredo Aguilar, Roland Wohlgemuth, Tomasz Twardowski, „Introduction to the special issue: Trends in bioeconomy”, New Biotechnology, 61, 9-10, 2021. DOI:10.1016/j.nbt.2020.11.002
Roland Wohlgemuth, Tomasz Twardowski, Alfredo Aguilar, „Bioeconomy moving forward step by step – A global journey”, New Biotechnology, 61, 22-28, 2021. DOI:10.1016/j.nbt.2020.11.006
Karolina Jarzyniak, Joanna Banasiak, Tomasz Jamruszka, Aleksandra Pawela, Martin Di Donato, Ondřej Novák, Markus Geisler, Michał Jasiński, „Early stages of legume–rhizobia symbiosis are controlled by ABCG-mediated transport of active cytokinins”, Nature Plants, 7, 428-436, 2021. DOI: 10.1038/s41477-021-00873-6
Angelika Andrzejewska, Małgorzata Zawadzka, Julita Gumna, David J Garfinkel, Katarzyna Pachulska-Wieczorek, „In vivo structure of the Ty1 retrotransposon RNA genome”, Nucleic Acids Research, 49, 2878-2893, 2021. DOI: 10.1093/nar/gkab090
Natalia Koralewska, Agnieszka Szczepańska, Kinga Ciechanowska, Marta Wojnicka, Maria Pokornowska, Marek C. Milewski, Dorota Gudanis, Daniel Baranowski, Chandran Nithin, Janusz M. Bujnicki, Zofia Gdaniec, Marek Figlerowicz, Anna Kurzyńska-Kokorniak, „RNA and DNA G-quadruplexes bind to human Dicer and inhibit its activity”, Cellular and Molecular Life Sciences, 78, 3709-3724, 2021. DOI: 10.1007/s00018-021-03795-w
Paulina Bierwagen, Joanna Śliwiak, Mariusz Jaskólski, Anna Urbanowicz, „Strong interactions between Salp15 homologues from the tick I. ricinus and distinct types of the outer surface OspC protein from Borrelia”, Ticks and Tick-borne Diseases, 12, art. nr 101630, 2021. DOI: 10.1016/j.ttbdis.2020.101630
Aleksander Strugała, Jakub Jagielski, Karol Kamel, Grzegorz Nowaczyk, Marcin Radom, Marek Figlerowicz, Anna Urbanowicz, „Virus-Like Particles Produced Using the Brome Mosaic Virus Recombinant Capsid Protein Expressed in a Bacterial System”, International Journal of Molecular Sciences, 22, art. nr 3098, 2021. DOI: 10.3390/ijms22063098
Paula Michalak, Julita Piasecka, Barbara Szutkowska, Ryszard Kierzek, Ewa Biała, Walter N. Moss, Elżbieta Kierzek, „Conserved Structural Motifs of Two Distant IAV Subtypes in Genomic Segment 5 RNA”, Viruses, 13, art. nr 525, 2021. DOI: 10.3390/v13030525
Beata P. Plitta-Michalak, Mirosława Z. Naskręt-Barciszewska, Jan Barciszewski, Paweł Chmielarz, Marcin Michalak, „Epigenetic Integrity of Orthodox Seeds Stored under Conventional and Cryogenic Conditions”, Forests, 12, art. nr 288, 2021. DOI: 10.3390/f12030288
Marta Ignasiak, Karolina Nowicka-Bauer, Marta Grzechowiak, Michał Sikorski, Bachuki Shashikadze, Mariusz Jaskólski, Bronisław Marciniak, „Sensitized photo-oxidation of plant cytokinin-specific binding protein - Does the environment of the thioether group influence the oxidation reaction? From primary intermediates to stable products”, Free Radical Biology and Medicine, 165, 411-420, 2021. DOI: 10.1016/j.freeradbiomed.2021.02.004
Marta Rachwalak, Joanna Romanowska, Michał Sobkowski, Jacek Stawiński, „Nucleoside Di- and Triphosphates as a New Generation of Anti-HIV Pronucleotides. Chemical and Biological Aspects”, Applied Sciences, 11, art. nr 2248, 2021. DOI: 10.3390/app11052248
Sebastian Rykowski, Dorota Gurda-Woźna, Marta Orlicka-Płocka, Agnieszka Fedoruk-Wyszomirska, Małgorzata Giel-Pietraszuk, Eliza Wyszko, Aleksandra Kowalczyk, Paweł Stączek, Andrzej Bak, Agnieszka Kiliszek, Wojciech Rypniewski, Agnieszka B. Olejniczak, „Design, Synthesis, and Evaluation of Novel 3-Carboranyl-1,8-Naphthalimide Derivatives as Potential Anticancer Agents”, International Journal of Molecular Sciences, 22, art. nr 2772, 2021. DOI: 10.3390/ijms22052772
Mariusz Jaskólski, Zbigniew Dauter, Ivan G. Shabalin, Mirosław Gilski, Dariusz Brzeziński, Marcin Kowiel, Bernhard Rupp, Alexander Wlodawer, „Crystallographic models of SARS-CoV-2 3CLpro: in-depth assessment of structure quality and validation”, IUCrJ, 8, 238-256, 2021. DOI: 10.1107/S2052252521001159
Bartosz Naskręcki, Zbigniew Dauter, Mariusz Jaskólski, „Arithmetic proof of the multiplicity-weighted Euler characteristic for symmetrically arranged space-filling polyhedra”, Acta Crystallographica A – Foundation and Advances, 77, 126-129, 2021. DOI:10.1107/S2053273320016186
Ewa Woźniak, Agata Tyczewska, Tomasz Twardowski, „A Shift Towards Biotechnology: Social Opinion in the EU”, Trends in Biotechnology, 39, 214-218, 2021. DOI:10.1016/j.tibtech.2020.08.001
Joanna Kołodziejczyk-Czepas, Michał Ponczek, Magdalena Sady-Janczak, Radosław Pilarski, Bożena Bukowska, „Extracts from Uncaria tomentosa as antiplatelet agents and thrombin inhibitors – The in vitro and in silico study”, Journal of Ethnopharmacology, 267, art. nr 113494, 2021. DOI: 10.1016/j.jep.2020.113494
Venkata N. K. B. Adusumalli, Lucyna Mrówczyńska, Dorota Kwiatek, Łukasz Piosik, Andrzej Lesicki, Stefan Lis, „Ligand-Sensitised LaF3:Eu3+ and SrF2:Eu3+ Nanoparticles and in Vitro Haemocompatiblity Studies”, ChemMedChem, 16, 1640-1650, 2021. DOI:10.1002/cmdc.202100028
Arkadiusz D. Liśkiewicz, Łukasz Marczak, Katarzyna Bogus, Daniela Liśkiewicz, Marta Przybyła, Joanna Lewin-Kowalik, „Proteomic and Structural Manifestations of Cardiomyopathy in Rat Models of Obesity and Weight Loss”, Frontiers in Endocrinology, 12, art. nr 568197, 2021. DOI: 10.3389/fendo.2021.568197
Marek Grabowski, David R. Coopera, Dariusz Brzeziński, Joanna M. Macnar, Ivan G. Shabalin, Marcin Cymborowski, Zbyszek Otwinowski, Wladek Minor, „Synchrotron radiation as a tool for macromolecular X-Ray Crystallography: A XXI century perspective”, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, 489, 30-40, 2021. DOI: 10.1016/j.nimb.2020.12.016
Joanna Nowak-Karnowska, Karolina Zielińska, Jan Milecki, Bohdan Skalski, „Thermally reversible and irreversible interstrand photocrosslinking of 5-chloro-2′-deoxy-4-thiouridine modified DNA oligonucleotides”, Organic & Biomolecular Chemistry, 19, 1292-1295, 2021. DOI: 10.1039/d0ob02422h
Monika Pietrowska, Aneta Zebrowska, Marta Gawin, Łukasz Marczak, Priyanka Sharma, Sujan Mondal, Justyna Mika, Joanna Polańska, Soldano Ferrone, John M. Kirkwood, Piotr Widlak, Theresa L. Whiteside, „Proteomic profile of melanoma cell-derived small extracellular vesicles in patients’ plasma: a potential correlate of melanoma progression”, Journal of Extracellular Vesicles, 10, art. nr e12063, 2021. DOI:10.1002/jev2.12063
Taavi Vanaveski, Svetlana Molchanova, Dan Duc Pham, Annika Schäfer, Ceren Pajanoja, Jane Narvik, Vignesh Srinivasan, Mari Urb, Maria Koivisto, Eero Vasar, Tönis Timmusk, Rimante Minkeviciene, Ove Eriksson, Maciej Lalowski, Tomi Taira, Laura Korhonen, Vootele Voikar, Dan Lindholm, „PGC-1α Signaling Increases GABA(A) Receptor Subunit α2 Expression, GABAergic Neurotransmission and Anxiety-Like Behavior in Mice”, Frontiers in Molecular Neuroscience, 14, art. nr 588230, 2021. DOI: 10.3389/fnmol.2021.588230
Łukasz Przybył, Magdalena Woźna-Wysocka, Emilia Kozłowska, Agnieszka Fiszer, „What, When and How to Measure—Peripheral Biomarkers in Therapy of Huntington’s Disease”, International Journal of Molecular Sciences, 22, art. nr 1561, 2021. DOI:10.3390/ijms22041561
Agnieszka Ruszkowska, „METTL16, Methyltransferase-Like Protein 16: Current Insights into Structure and Function”, International Journal of Molecular Sciences, 22, art. nr 2176, 2021. DOI: 10.3390/ijms22042176
Agata Tyczewska, Joanna Gracz-Bernaciak, Jakub Szymkowiak, Tomasz Twardowski, „Herbicide stress-induced DNA methylation changes in two Zea mays inbred lines differing in Roundup® resistance”, Journal of Applied Genetics, 62, 235-248, 2021. DOI: 10.1007/s13353-021-00609-4
Ewa Woźniak, Agata Tyczewska, Tomasz Twardowski, „Bioeconomy development factors in the European Union and Poland”, New Biotechnology, 60, 2-8, 2021. DOI:10.1016/j.nbt.2020.07.004
Paulina Gałka-Marciniak, Martyna Olga Urbanek-Trzeciak, Paulina Maria Nawrocka, Piotr Kozłowski, „A pan-cancer atlas of somatic mutations in miRNA biogenesis genes”, Nucleic Acids Research, 49, 601–620, 2021. DOI: 10.1093/nar/gkaa1223
Sławomir Sowa, Tomasz Twardowski, Ewa Woźniak, Tomasz Zimny, „Legal and practical challenges to authorization of gene edited plants in the EU”, New Biotechnology, 60, 183-188, 2021. DOI: 10.1016/j.nbt.2020.10.008
Alicja E. Grzegorzewska, Adrianna Mostowska, Monika K. Świderska, Wojciech Marcinkowski, Ireneusz Stolarek, Marek Figlerowicz, Paweł P. Jagodziński, „Polymorphism rs368234815 of interferon lambda 4 gene and spontaneous clearance of hepatitis C virus in haemodialysis patients: a case-control study”, BMC Infectious Diseases, 21, art. nr 102, 2021. DOI: 10.1186/s12879-021-05777-6
Sylwester Swat, Artur Laskowski, Jan Badura, Wojciech Frohmberg, Paweł Wojciechowski, Aleksandra Świercz, Marta Kasprzak, Jacek Błażewicz, „Genome-scale de novo assembly using ALGA”, Bioinformatics, art. nr btab005, 2021. DOI:10.1093/bioinformatics/btab005
Krzysztof Drygalski, Katarzyna Siewko, Andrzej Chomentowski, Cezary Odrzygóźdź, Anna Zalewska, Adam Krętowski, Mateusz Maciejczyk, „Phloroglucinol Strengthens the Antioxidant Barrier and Reduces Oxidative/Nitrosative Stress in Nonalcoholic Fatty Liver Disease (NAFLD)”, Oxidative Medicine and Cellular Longevity, 2021, art. nr 8872702, 2021. DOI: 10.1155/2021/8872702
Ayumi Kosaka, Marta Pastorczyk, Mariola Piślewska-Bednarek, Takumi Nishiuchi, Erika Ono, Haruka Suemoto, Atsushi Ishikawa, Henning Frerigmann, Masanori Kaido, Kazuyuki Mise, Paweł Bednarek, Yoshitaka Takano, „Tryptophan-derived metabolites and BAK1 separately contribute to Arabidopsis postinvasive immunity against Alternaria brassicicola”, Scientific Reports, 11, art. nr 1488, 2021. DOI: 10.1038/s41598-020-79562-x
Andrii Pyrih, Mariusz Jaskólski, Andrzej K. Gzella, Roman Lesyk, „Synthesis, structure and evaluation of anticancer activity of 4-amino-1,3-thiazolinone/pyrazoline hybrids”, Journal of Molecular Structure, 1224, art. nr 129059, 2021. DOI:10.1016/j.molstruc.2020.129059
Anna Parus, Jan Homa, Dariusz Radoński, Grzegorz Framski, Marta Woźniak-Karczewska, Anna Syguda, Łukasz Ławniczak, Łukasz Chrzanowski, „Novel esterquat-based herbicidal ionic liquids incorporating MCPA and MCPP for simultaneous stimulation of maize growth and fighting cornflower”, Ecotoxicology and Environmental Safety, 208, art. nr 111595, 2021. DOI: 10.1016/j.ecoenv.2020.111595
Yanwu Guo, Cristina Tocchini, Rafał Ciosk, „CLK-2/TEL2 is a conserved component of the nonsense-mediated mRNA decay pathway”, PLoS One, 16, art. nr e0244505, 2021. DOI: 10.1371/journal.pone.0244505
Joanna Tracz, Luiza Handschuh, Maciej Lalowski, Łukasz Marczak, Katarzyna Kostka-Jeziorny, Bartłomiej Perek, Maria Wanic-Kossowska, Alina Podkowińska, Andrzej Tykarski, Dorota Formanowicz, Magdalena Łuczak, „Proteomic Profiling of Leukocytes Reveals Dysregulation of Adhesion and Integrin Proteins in Chronic Kidney Disease-Related Atherosclerosis”, Journal of Proteome Research, 20, 3053-3067, 2021. DOI:10.1021/acs.jproteome.0c00883
Mariusz Jaskólski, Alexander Wlodawer, Zbigniew Dauter, Ivan Shabalin, Maksymialian Chruszcz, „Celebrating the 75th birthday of Professor Wladek Minor, one of the most accomplished Polish-American structural biologists”, Acta Biochimica Polonica, 68, 1-4, 2021. DOI: 10.18388/abp.2020_5539
Jakub Barciszewski, Kamil Szpotkowski, Janusz Wiśniewski, Robert Kołodziejczyk, Dariusz Rakus, Mariusz Jaskólski, „Structural studies of human muscle FBPase”, Acta Biochimica Polonica, 68, 5-14, 2021. DOI: 10.18388/abp.2020_5554
Marta Grzechowiak, Bartosz Sekuła, Mariusz Jaskólski, Miłosz Ruszkowski, „Serendipitous crystallization of E. coli HPII catalase, a sequel to the tale usually not told”, Acta Biochimica Polonica, 68, 29-31, 2021. DOI: 10.18388/abp.2020_5501
Eliza Wyszko, Mariusz Popenda, Dorota Gudanis, Joanna Sarzyńska, Agnieszka Belter,
Patrick Perrigue, Paweł Skowronek, Katarzyna Rolle, Jan Barciszewski, „The model structure of the hammerhead ribozyme formed by RNAs of reciprocal chirality”, Bioscience Reports, 41, art. nr BSR20203424, 2021. DOI: 10.1042/BSR20203424
A. Nowak-Terpiłowska, J. Zeyland, „Impact of cell harvesting methods on detection of cell surface proteins and apoptotic markers”, Brazilian Journal of Medical and Biological Research, 54, art. nr e10197, 2021. DOI: 10.1590/1414-431X202010197
Julia O. Misiorek, Alicja Przybyszewska-Podstawka, Joanna Kałafut, Beata Paziewska, Katarzyna Rolle, Adolfo Rivero-Müller, Matthias Nees, „Context Matters: NOTCH Signatures and Pathway in Cancer Progression and Metastasis”, Cells, 10, art. nr 94, 2021. DOI: 10.3390/cells10010094
Jarosław Lewandowski, Alicja A. Komur, Daria Sobańska, „Structural and functional relationship of mammalian and nematode ferritins”, Biotechnologia, 102, 457-471, 2021. DOI:10.5114/bta.2021.111110
Magdalena M. Surdyka, Maciej Figiel, „Retrograde capabilities of adeno-associated virus vectors in the central nervous system”, Biotechnologia, 102, 473-478, 2021. DOI:10.5114/bta.2021.111111
Aneta A. Dyczkowska, Agnieszka Chabowska-Kita, „Caenorhabditis elegans as a model organism in obesity research”, Biotechnologia, 102, 337-362, 2021. DOI:10.5114/bta.2021.109094
Kinga Ciechanowska, Maria Pokornowska, Anna Kurzyńska-Kokorniak, „Genetic Insight into the Domain Structure and Functions of Dicer-Type Ribonucleases”, International Journal of Molecular Sciences, 22, art. nr 616, 2021. DOI:10.3390/ijms22020616
Louisa Lepkes, Mohamad Kayali, Britta Blümcke, Jonas Weber, Malwina Suszyńska, Sandra Schmidt, Julika Borde, Katarzyna Klonowska, Barbara Wappenschmidt, Jan Hauke, Piotr Kozłowski, Rita K. Schmutzler, Eric Hahnen, Corinna Ernst, „Performance of In Silico Prediction Tools for the Detection of Germline Copy Number Variations in Cancer Predisposition Genes in 4208 Female Index Patients with Familial Breast and Ovarian Cancer”, Cancers, 13, art. nr 118, 2021. DOI: 10.3390/cancers13010118
Paweł Czerniawski, Anna Piasecka, Paweł Bednarek, „Evolutionary changes in the glucosinolate biosynthetic capacity in species representing Capsella, Camelina and Neslia genera”, Phytochemistry, 181, art. nr 112571, 2021. DOI:10.1016/j.phytochem.2020.112571
Paweł Śledziński, Agnieszka Nowak-Terpiłowska, Joanna Zeyland, „Cannabinoids in Medicine: Cancer, Immunity, and Microbial Diseases”, International Journal of Molecular Sciences, 22, art. nr 263, 2021. DOI: 10.3390/ijms22010263
Małgorzata Grabowska, Bartosz F. Grześkowiak, Katarzyna Rolle, Radosław Mrówczyński, „Magnetic Nanoparticles as a Carrier of dsRNA for Gene Therapy”, [w:] Bio-Carrier Vectors. Methods and Protocols, Kumaran Narayanan (red.), Humana Press, 2021, pp. 69-81. DOI: 10.1007/978-1-0716-0943-9_6
Sílvia Carbonell Sala, Barbara Uszczyńska-Ratajczak, Julien Lagarde, Rory Johnson, Roderic Guigó, „Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS)”, [w:] Functional Analysis of Long Non-Coding RNAs. Methods and Protocols, Haiming Cao (red.), Humana Press, 2021, pp. 133-159. DOI: 10.1007/978-1-0716-1158-6_9

2020

Inda Setyawati, Weronika K. Stanek, Maria Majsnerowska, Lotteke J. Y. M. Swier, Els Pardon, Jan Steyaert, Albert Guskov, Dirk J. Slotboom, „In vitro reconstitution of dynamically interacting integral membrane subunits of energy-coupling factor transporters”, Elife, 9, art. nr e64389, 2020. DOI: 10.7554/eLife.64389
Magdalena Jazurek-Ciesiołka, Adam Ciesiołka, Alicja A. Komur, Martyna O. Urbanek Trzeciak, Włodzimierz J. Krzyżosiak, Agnieszka Fiszer, „RAN Translation of the Expanded CAG Repeats in the SCA3 Disease Context”, Journal of Molecular Biology, 432, 24, art. nr 166699, 2020. DOI: 10.1016/j.jmb.2020.10.033
Daria Różycka, Małgorzata Korycka-Machała, Anna Żaczek, Jarosław Dziadek, Dorota Gurda, Marta Orlicka-Płocka, Eliza Wyszko, Katarzyna Biniek-Antosiak, Wojciech Rypniewski, Agnieszka B.Olejniczak, „Novel Isoniazid-Carborane Hybrids Active In Vitro against Mycobacterium tuberculosis”, Pharmaceuticals, 13, art. nr 465, 2020. DOI:10.3390/ph13120465
Sławomir Wojtulewski, Jakub Władysław Strawa, Michał Tomczyk, Magdalena Gaweł, Krzysztof Brzeziński, „A new look at two polymorphic crystal structures of dinenzoylmethane: relationship between the crystal packing and the hydrogen atom position revealed by quantum chemistry and quantum crystallography methods”, Acta Crystallographica Section B-Structural Science Crystal Engineering and Materials, 76, 957-966, p. 6, 2020. DOI:10.1107/S2052520620012196
Malwina Hyjek-Składanowska, Anna R. Stasińska, Agnieszka Napiórkowska-Gromadzka, Aneta Bartlomiejczak, Punit P. Seth, Marcin K. Chmielewski, Marcin Nowotny, „Disulfide bridge cross-linking between protein and the RNA backbone as a tool to study RNase H1”, Bioorganic & Medicinal Chemistry, 28, art. nr 115741, DOI: 10.1016/j.bmc.2020.115741
Agnieszka Szuba, Łukasz Marczak, Izabela Ratajczak, „Metabolome adjustments in ectomycorrhizal Populus x canescens associated with strong promotion of plant growth by Paxillus involutus despite a very low root colonization rate”, Tree Physiology, 40, 1726-1743, 2020. DOI: 10.1093/treephys/tpaa100
Klaudia Wieczorek, Barbara Szutkowska, Elżbieta Kierzek, „Anti-Influenza Strategies Based on Nanoparticle Applications”, Pathogens, 9, art. nr 1020, 2020. DOI: 10.3390/pathogens9121020
Marta Sikora, Ewa Bretes, Joanna Perla-Kajan, Izabela Lewandowska, Łukasz Marczak, Hieronim Jakubowski, „Genetic Attenuation of Paraoxonase 1 Activity Induces Proatherogenic Changes in Plasma Proteomes of Mice and Humans”, Antioxidants 9, art. nr 1198, 2020. DOI: 10.3390/antiox9121198
Krzysztof Brzeziński, „S-adenosyl-L-homocysteine Hydrolase: A Structural Perspective on the Enzyme with Two Rossmann-Fold Domains”, Biomolecules, 10, art. nr 1682, 2020. DOI:10.3390/biom10121682
Anna Wojakowska, Aneta Zebrowska, Agata Skowronek, Tomasz Rutkowski, Krzysztof Polański, Piotr Widlak, Łukasz Marczak, Monika Pietrowska, „Metabolic Profiles of Whole Serum and Serum-Derived Exosomes Are Different in Head and Neck Cancer Patients Treated by Radiotherapy”, Journal of Personalized Medicine, 10, art. nr 229, 2020. DOI:10.3390/jpm10040229
Jolanta Szenajch, Alicja Szabelska-Beręsewicz, Aleksandra Świercz, Joanna Zyprych-Walczak, Idzi Siatkowski, Michał Góralski, Agnieszka Synowiec, Luiza Handschuh, „Transcriptome Remodeling in Gradual Development of Inverse Resistance between Paclitaxel and Cisplatin in Ovarian Cancer Cells Associated Data”, International Journal of Molecular Sciences, 21, art. nr. 9218, 2020. DOI: 10.3390/ijms21239218
Kathleen Wantoch von Rekowski, Philipp Konig, Svenja Henze, Martin Schlesinger, Piotr Zawierucha, Radosław Januchowski, Gerd Bendas, „Insight into Cisplatin-Resistance Signaling of W1 Ovarian Cancer Cells Emerges mTOR and HSP27 as Targets for Sensitization Strategies”, International Journal of Molecular Sciences, 21, art. nr 9240, 2020. DOI: 10.3390/ijms21239240
Witold Andrałojć, Karol Pasternak, Joanna Sarzyńska, Karolina Zielińska, Ryszard Kierzek, Zofia Gdaniec, „The origin of the high stability of 3'-terminal uridine tetrads: contributions of hydrogen bonding, stacking interactions, and steric factors evaluated using modified oligonucleotide analogs”, RNA, 26, 2000-2016, 2020. DOI: 10.1261/rna.076539.120
Olga Utyro, Joanna Perla-Kajan, Jolanta Kubalska, Alla Graban, Hieronim Jakubowski, „Telomere length and mtDNA copy number in human cystathionine beta-synthase deficiency”, Free Radical Biology and Medicine, 160, 219-226, 2020. DOI:10.1016/j.freeradbiomed.2020.07.036
Adam Kraszewski, Michał Sobkowski, Jacek Stawiński, „H-Phosphonate Chemistry in the Synthesis of Electrically Neutral and Charged Antiviral and Anticancer Pronucleotides”, Frontiers in Chemistry, 8, art. nr 595738, 2020. DOI: 10.3389/fchem.2020.595738
Dariusz Wawrzyniak, Grzegorz Framski, Piotr Januszczyk, Tomasz Ostrowski, Dagmara Baraniak, Zofia Jahnz-Wechmann, Joanna Fogt, Andrzej Manikowski, Daniel Baranowski, Katarzyna Rolle, Jerzy Boryski, „7-(-D-Ribofuranosyl) guanine and its Analogues Modified in the Sugar Portion: Synthesis and Antiglioma Properties”, Chemistryselect, 5, 13370-13375, 2020. DOI: 10.1002/slct.202003393
Marta Rachwalak, Justyna Gołębiewska, Tomasz Jakubowski, Jacek Stawiński, „Synthesis of Pyridiniumboranephosphonate Diesters and Related Compounds using Trityl Cation as a Borane Hydride Acceptor”, Synthesis, 53, 509-517, 2020. DOI: 10.1055/s-0040-1706569
Mateusz Chwastyk, Ewa A. Panek, Jan Malinowski, Mariusz Jaskólski, Marek Cieplak, „Properties of Cavities in Biological Structures-A Survey of the Protein Data Bank”, Frontiers in Molecular Biosciences, 7, art. nr 591381, 2020. DOI: 10.3389/fmolb.2020.591381
Anna J. Jasińska, Tien S.Dong, Venu Lagishetty, William Katzka, Jonathan P. Jacobs, Christopher A. Schmitt, Jennifer Danzy Cramer, Dongzhu Ma, Willem G. Coetzer, Paul J. Grobler, Trudy R.Turner, Nelson Freimer, Ivona Pandrea, Cristian Apetrei, „Shifts in microbial diversity, composition, and functionality in the gut and genital microbiome during a natural SIV infection in vervet monkeys”, Microbiome, 8, art. nr 154, 2020. DOI: 10.1186/s40168-020-00928-4
Fatima Domenica Elisa De Palma, Valentina Del Monaco, Jonathan G. Pol, Margerier Kremer, Valeria D'Argenio, Gautier Stoll, Donatella Montanaro, Barbara Uszczyńska-Ratajczak, Cecilia C. Klein, Anna Vlasova, Gerardo Botti, Massimiliano D'Aiuto, Alfonso Baldi, Roderic Guigo, Guido Kroemer, Maria Chiara Maiuri, Francesco Salvatore, „The abundance of the long intergenic non-coding RNA 01087 differentiates between luminal and triple-negative breast cancers and predicts patient outcome”, Pharmacological Research, 161, art. nr 105249, 2020. DOI:10.1016/j.phrs.2020.105249
Julita Piasecka, Aleksandra Jarmołowicz, Elżbieta Kierzek, „Organization of the Influenza A Virus Genomic RNA in the Viral Replication Cycle-Structure, Interactions, and Implications for the Emergence of New Strains”, Pathogens, 9, art. nr 951, 2020. DOI: 10.3390/pathogens9110951
Ivan G. Shabalin, Mateusz P. Czub, Karolina Majorek, Dariusz Brzeziński, Marek Grabowski, David R. Cooper, Mateusz Panasiuk, Maksymilian Chruszcz, Władek Minor, „Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy”, IUCRJ, 7, 1048-1058, 2020. DOI: 10.1107/S2052252520012944
Martyna O. Urbanek-Trzeciak, Paulina Gałka-Marciniak, Paulina M. Nawrocka, Ewelina Kowal, Sylwia Szwec, Maciej Giefing, Piotr Kozłowski, „Pan-cancer analysis of somatic mutations in miRNA genes”, Ebiomedicine, 61, art. nr 103051, 2020. DOI: 10.1016/j.ebiom.2020.103051
Dorota Gudanis, Damian Kaniowski, Katarzyna Kulik, Daniel Baranowski, Zofia Gdaniec, Barbara Nawrot, „Formation of an RNA Quadruplex-Duplex Hybrid in Living Cells between mRNA of the Epidermal Growth Factor Receptor (EGFR) and a G-Rich Antisense Oligoribonucleotide”, Cells, 9, 2020. DOI: 10.3390/cells9112375
Marta Szabat, Dagny Lorent, Tomasz Czapik, Maria Tomaszewska, Elżbieta Kierzek, Ryszard Kierzek, „RNA Secondary Structure as a First Step for Rational Design of the Oligonucleotides towards Inhibition of Influenza A Virus Replication”, Pathogens, 9, art. nr 925, 2020. DOI: 10.3390/pathogens9110925
Mariola Dutkiewicz, Jakub Kuczyński, Michał Jarząb, Aleksandra Stachowiak, Agata Świątkowska, „New RNA Structural Elements Identified in the Coding Region of the Coxsackie B3 Virus Genome”, Viruses, 12, art. nr 1232, 2020. DOI: 10.3390/v12111232
Dorota Formanowicz, Agnieszka Rybarczyk, Marcin Radom, Krzysztof Tanas, Piotr Formanowicz, „A Stochastic Petri Net-Based Model of the Involvement of Interleukin 18 in Atherosclerosis”, International Journal of Molecular Sciences, 21, art. nr 8574, 2020. DOI:10.3390/ijms21228574
Waldemar Buchwald, Michał Szulc, Justyna Baraniak, Natalia Derebecka, Małgorzata Kania-Dobrowolska, Anna Piasecka, Anna Bogacz, Monika Karasiewicz, Joanna Bartkowiak-Wieczorek, Radosław Kujawski, Agnieszka Gryszczyńska, Piotr Kachlicki, Mariola Dreger, Marcin Ożarowski, Anna Krajewska-Patan, Małgorzata Górska-Paukszta, Ewa Kamińska, Przemysław L. Mikołajczak, „The Effect of Different Water Extracts from Platycodon grandiflorum on Selected Factors Associated with Pathogenesis of Chronic Bronchitis in Rats”, Molecules, 25, art. nr 5020, 2020. DOI: 10.3390/molecules25215020
Nivedita Dutta, Joanna Sarzyńska, Ansuman Lahiri, „Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space”, Journal of Chemical Information and Modeling, 60, 4995-5002. DOI: 10.1021/acs.jcim.0c00369
Jan Sadoch, Monika Pyc, Anna Urbanowicz, Adam Iglewski, Radosław Pilarski, „High-throughput evolutionary optimization of the induction medium towards recombinant protein production in BY-2 tobacco”, Biotechnology and Bioengineering, 118, 676-689, 2020. DOI:10.1002/bit.27594
Song Mao, Bartosz Sekuła, Miłosz Ruszkowski, Srivathsan V. Ranganathan, Phesinee Haruehanroengra, Ying Wu, Fusheng Shen, Jia Sheng, „Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA”, Nucleic Acids Research, 48, 10087-10100, 2020. DOI: 10.1093/nar/gkaa737
Mirosław Gilski, Piotr Bernatowicz, Arkadiusz Sakowicz, Marek P. Szymański, Aldona Zalewska, Agnieszka Szumna, Mariusz Jaskólski, „C-60 in a peptidic cage: a case of symmetry mismatch studied by crystallography and solid-state NMR”, Acta Crystallographica Section B - Structural Science Crystal Engineering and Materials, 76, 815-824, 2020. DOI:10.1107/S2052520620009944
Julita Gumna, Tomasz Zok, Kacper Figurski, Katarzyna Pachulska-Wieczorek, Marta Szachniuk, Danny Barash, „RNAthor - fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis”, Plos One, 15, art. nr e0239287, 2020. DOI: 10.1371/journal.pone.0239287
Violetta Katarzyna Macioszek, Magdalena Gapińska, Agnieszka Żmieńko, Mirosław Sobczak, Andrzej Skoczowski, Jakub Oliwa, Andrzej Kiejstut Kononowicz, „Complexity of Brassica oleracea-Alternaria brassicicola Susceptible Interaction Reveals Downregulation of Photosynthesis at Ultrastructural, Transcriptional, and Physiological Levels”, Cells, 9, art. nr 2329, 2020. DOI: 10.3390/cells9102329
Julia Latowska, Adriana Grabowska, Żaneta Zarębska, Konrad Kuczyński, Bogna Kuczyńska, Katarzyna Rolle, „Non-Coding RNAs in Brain Tumors, the Contribution of lncRNAs, circRNAs, and snoRNAs to Cancer Development-Their Diagnostic and Therapeutic Potential”, International Journal of Molecular Sciences, 21, art. nr 7001, 2020. DOI: 10.3390/ijms21197001
Tomasz P. Lehmann, Joanna Miśkiewicz, Natalia Szostak, Marta Szachniuk, Sylwia Grodecka-Gazdecka, Paweł P. Jagodziński, „In Vitro and in Silico Analysis of miR-125a with rs12976445 Polymorphism in Breast Cancer Patients”, Applied Sciences, 10, art. nr 7275, 2020. DOI: 10.3390/app10207275
Paweł Bąkowski, Kamilla Bąkowska-Żywicka, Tomasz Piontek, „Clinical practice and postoperative rehabilitation after knee arthroscopy vary according to surgeons' expertise: a survey among polish arthroscopy society members”, BMC Musculoskeletal Disorders, 21, art. nr 626. DOI: 10.1186/s12891-020-03649-9
Marta Orlicka-Płocka, Dorota Gurda-Woźna, Agnieszka Fedoruk-Wyszomirska, Eliza Wyszko, „Circumventing the Crabtree effect: forcing oxidative phosphorylation (OXPHOS) via galactose medium increases sensitivity of HepG2 cells to the purine derivative kinetin riboside”, Apoptosis, 25, 835-852, 2020. DOI: 10.1007/s10495-020-01637-x
Isabel Nogues, Angela Tramonti, Sebastiana Angelaccio, Miłosz Ruszkowski, Bartosz Sekuła, Roberto Contestabile, „Structural and kinetic properties of serine hydroxymethyltransferase from the halophytic cyanobacterium Aphanothece halophytica provide a rationale for salt tolerance”, International Journal of Biological Macromolecules, 159, 517-529, 2020. DOI:10.1016/j.ijbiomac.2020.05.081
Pengchao Hao, Jian Xia, Jie Liu, Martin Di Donato, Konrad Pakula, Aurelien Bailly, Michał Jasiński, Markus Geisler, „Auxin-transporting ABC transporters are defined by a conserved D/E-P motif regulated by a prolylisomerase”, Journal of Biological Chemistry, Journal of Biological Chemistry, 295, 13094-13105, 2020. DOI: 10.1074/jbc.RA120.014104
Anna Philips, Katarzyna Nowis, Michał Stelmaszczuk, Paulina Jackowiak, Jan Podkowiński, Luiza Handschuh, Marek Figlerowicz, „Expression Landscape of circRNAs in Arabidopsis thaliana Seedlings and Adult Tissues”, Frontiers in Plant Science, 11, art. nr 576581, 2020. DOI:10.3389/fpls.2020.576581
Nikolaus Rajewsky, Genevieve Almouzni, Stanisław Górski, Stein Aerts, Ido Amit, Michela G. Bertero, Christoph Bock, Annelien Bredenoord, Giacomo Cavalli, Susanna Chiocca, Hans Clevers, Bart De Strooper, Angelika Eggert, Jan Ellenberg, Xose M. Fernandez, Marek Figlerowicz, Susan M. Gasser, Norbert Hubner, Jorgen Kjems, Juergen A. Knoblich, Grietje Krabbe, Peter Lichter, Sten Linnarsson, Jean-Christophe Marine, John C. Marioni, Marc A. Marti-Renom, Mihai G. Netea, Dorthe Nickel, Marcelo Nollmann, Halina R. Novak, Helen Parkinson, Stefano Piccolo, Ines Pinheiro, Ana Pombo, Christian Popp, Wolf Reik, Sergio Roman-Roman, Philip Rosenstiel, Joachim L. Schultze, Oliver Stegle, Amos Tanay, Giuseppe Testa, Dimitris Thanos, Fabian J. Theis, Maria-Elena Torres-Padilla, Alfonso Valencia, Celine Vallot, Alexander van Oudenaarden, Marie Vidal, Thierry Voet, „LifeTime and improving European healthcare through cell-based interceptive medicine”, Nature, 587, 377-386, 2020. DOI: 10.1038/s41586-020-2715-9
Anna Piasecka, Aneta Sawikowska, Anetta Kuczyńska, Piotr Ogrodowicz, Krzysztof Mikołajczak, Paweł Krajewski, Piotr Kachlicki, Phenolic Metabolites from Barley in Contribution to Phenome in soil Moisture Deficit”, International Journal of Molecular Sciences, 21, art. nr 6032, 2020. DOI:10.3390/ijms21176032
Joanna E. Raczyńska, Barbara Imiołczyk, Marlena Komorowska, Joanna Śliwiak, Justyna Czyrko-Horczak, Krzysztof Brzeziński, Mariusz Jaskólski, „Flexible loops of New Delhi metallo-beta-lactamase modulate its activity towards different substrates”, International Journal of Biological Macromolecules, 158, 104-115, 2020. DOI: 10.1016/j.ijbiomac.2020.04.219
Kamil Konrad Hus, Łukasz Marczak, Vladimir Petrilla, Monika Petrillova, Jaroslav Legath, Aleksandra Bocian, „Different Research Approaches in Unraveling the Venom Proteome of Naja ashei”, Biomolecules, 10, art. nr 1282, 2020. DOI: 10.3390/biom10091282
Marta Rachwalak, Małgorzata Rożniewska, Justyna Gołębiewska, Tomasz Jakubowski, Michał Sobkowski, Joanna Romanowska, „A practical synthesis of nucleoside 5'-diphosphates from nucleoside 5'-H-phosphonate monoesters”, Synthetic Communications, 50, 3836-3844, 2020. DOI: 10.1080/00397911.2020.1814817
Anna Philips, Katarzyna Nowis, Michał Stelmaszczuk, Jan Podkowiński, Luiza Handschuh, Paulina Jackowiak, Marek Figlerowicz, „Arabidopsis thaliana cbp80,c2h2, andflkKnockout Mutants Accumulate Increased Amounts of Circular RNAs”, Cells, 9, art. nr 1937, 2020. DOI:10.3390/cells9091937
Zbigniew Dauter, Mariusz Jaskólski, „Multiplicity-weighted Euler's formula for symmetrically arranged space-filling polyhedra”, Acta Crystallographica A - Foundation and Advances, 76, 580-583, 2020. DOI: 10.1107/S2053273320007093
Angelika Andrzejewska, Małgorzata Zawadzka, Katarzyna Pachulska-Wieczorek, „On the Way to Understanding the Interplay between the RNA Structure and Functions in Cells: A Genome-Wide Perspective”, International Journal of Molecular Sciences, 21, art. nr 6770, 2020. DOI: 10.3390/ijms21186770
Wen Wang, Xin Chen, Jędrzej Musiał, Jacek Błażewicz, „Two Meta-Heuristic Algorithms for Scheduling on Unrelated Machines with the Late Work Criterion”, International Journal of Applied Mathematics and Computer Science, 30, 573-584, 2020. DOI: 10.34768/amcs-2020-0042
Phillip J. McCown, Agnieszka Ruszkowska, Charlotte N. Kunkler, Kurtis Breger, Jacob P. Hulewicz, Matthew C. Wang, Noah Springer, Jessica A. Brown, „Naturally occurring modified ribonucleosides”, Wiley Interdisciplinary Reviews. RNA, 11, art. nr e1595, 2020. DOI: 10.1002/wrna.1595
Agnieszka Szuba, Łukasz Marczak, Rafał Kozłowski, „Role of the proteome in providing phenotypic stability in control and ectomycorrhizal poplar plants exposed to chronic mild Pb stress”, Environmental Pollution, 264, 114585, 2020. DOI: 10.1016/j.envpol.2020.114585
Jarosław Synak, Agnieszka Rybarczyk, Jacek Błażewicz, „Multi-agent approach to sequence structure simulation in the RNA World hypothesis”, Plos One, 15, art. nr e0238253, 2020. DOI: 10.1371/journal.pone.0238253
Paweł Małecki, Joanna Tracz, Magdalena Łuczak, Marek Figlerowicz, Katarzyna Mazur-Melewska, Wojciech Śluzewski, Anna Mania, „Serum proteome assessment in nonalcoholic fatty liver disease in children: a preliminary study”, Expert Review of Proteomics, 17, 623-632, 2020. DOI: 10.1080/14789450.2020.1810020
Dariusz Wawrzyniak, Małgorzata Grabowska, Paweł Głodowicz, Konrad Kuczyński, Bogna Kuczyńska, Agnieszka Fedoruk-Wyszomirska, Katarzyna Rolle, „Down-regulation of tenascin-C inhibits breast cancer cells development by cell growth, migration, and adhesionimpairment”, Plos One, 15, art. nr e0237889, 2020. DOI: 10.1371/journal.pone.0237889
Agnieszka Tomkowiak, Tomasz Jędrzejewski, Julia Spychała, Jakub Kuczyński, Michał T. Kwiatek, Agata Tyczewska, Roksana Skowrońska, Tomasz Twardowski, „Analysis of miRNA expression associated with theLr46gene responsible for APR resistance in wheat (Triticum aestivumL.)”, Journal of Applied Genetics, 61, 503-511, 2020. DOI: 10.1007/s13353-020-00573-5
Agnieszka Szuba, Łukasz Marczak, Izabela Ratajczak, Anna Kasprowicz-Maluski, Joanna Mucha, „Integrated proteomic and metabolomic analyses revealed molecular adjustments inPopulus x canescenscolonized with the ectomycorrhizal fungus Paxillus involutus, which limited plant host growth”, Environmental Microbiology, 22, 3754-3771, DOI: 10.1111/1462-2920.15146
Aditya Sarkar, Joanna Sarzyńska, Ansuman Lahiri, „Ensemble Allosteric Model for the Modified Wobble Hypothesis”, Journal of Physical Chemistry Letters, 11, 6337-6343, 2020. DOI:10.1021/acs.jpclett.0c00854
Renata Zawirska-Wojtasiak, Agnieszka Fedoruk-Wyszomirska, Paulina Piechowska, Sylwia Mildner-Szkudlarz, Joanna Bajerska, Elżbieta Wojtowicz, Krzysztof Przygoński, Dorota Gurda, Wiktoria Kubicka, Eliza Wyszko, „β-Carbolines in Experiments on Laboratory Animals”, International Journal of Molecular Sciences, 21, art. nr 5245, 2020. DOI: 10.3390/ijms21155245
Olga Wawrzyniak, Żaneta Zarębska, Konrad Kuczyński, Anna Gotz-Wieckowska, Katarzyna Rolle, „Protein-Related Circular RNAs in Human Pathologies”, Cells, 9, art. nr 1841, 2020. DOI:10.3390/cells9081841
Bartłomiej Budny, Katarzyna Karmelita-Katulska, Marek Stajgis, Tomasz Żemojtel, Marek Ruchala, Katarzyna Ziemnicka, „Copy Number Variants Contributing to Combined Pituitary Hormone”, International Journal of Molecular Sciences, 21, art. nr 1575, 2020. DOI:10.3390/ijms21165757
Zhichao Miao, Ryszard W. Adamiak, Maciej Antczak, Michał J. Boniecki, Janusz Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Yi Cheng, Fang-Chieh Chou, Rhiju Das, Nikolay V Dokholyan, Feng Ding, Caleb Geniesse, Yangwei Jiang, Astha Joshi, Andrey Krokhotin, Marcin Magnus, Olivier Mailhot, Francois Major, Thomas H. Mann, Paweł Piątkowski, Radosław Pluta, Mariusz Popenda, Joanna Sarzyńska, Lizhen Sun, Marta Szachniuk, Siqi Tian, Jian Wang, Jun Wang, Andrew M. Watkins, Jakub Wiedemann, Yi Xiao, Xu Xiaojun, Joseph D. Yesselman, Dong Zhang, Zhenzhen Zhang, Chenhan Zhao, Peinan Zhao, Yuanzhe Zhou, Tomasz Żok, Adriana Żyła, Aiming Ren, Robert T. Batey, Barbara L. Golden, Lin Huang, David M. Lilley, Yijin Liu, Dinshaw J. Patel, Eric Westhof, „RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers”, RNA, 26, 982-995, 2020. DOI: 10.1261/rna.075341.120
Jakub Kuczyński, Tomasz Twardowski, Jerzy Nawracała, Joanna Gracz-Bernaciak, Agata Tyczewska, „Chilling stress tolerance of two soya bean cultivars: Phenotypic and molecular responses”, Journal of Agronomy and Crop Science, 206, 759-772, 2020. DOI:10.1111/jac.12431
Adam Ciesiołka, Anna Stroynowska-Czerwińska, Paweł Joachimiak, Agata Ciołak, Emilia Kozłowska, Michał Michalak, Magdalena Dąbrowska, Marta Olejniczak, Katarzyna D. Raczyńska, Dominika Zielińska, Magdalena Woźna-Wysocka, Włodzimierz J. Krzyżosiak, Agnieszka Fiszer, „Artificial miRNAs targeting CAG repeat expansion in ORFs cause rapid deadenylation and translation inhibition of mutant transcripts”, Cellular and Molecular Life Sciences, 78, 1577-1596, 2020. DOI: 10.1007/s00018-020-03596-7
Tomasz Laskowski, Witold Andrałojć, Jakub Grynda, Paulina Gwarda, Jan Mazerski, Zofia Gdaniec, „A strong preference for the TA/TA dinucleotide step discovered for an acridine-based, potent antitumor dsDNA intercalator, C-1305: NMR-driven structural and sequence-specificity studies”, Scientific Reports, 10, art. nr 11697, 2020. DOI: 10.1038/s41598-020-68609-8
Anna Dembska, Angelika Świtalska, Agnieszka Fedoruk-Wyszomirska, Bernard Juskowiak, „Development of fluorescence oligonucleotide probes based on cytosine- and guanine-rich sequences”, Scientific Reports, 10, art. nr 11006, 2020. DOI: 10.1038/s41598-020-67745-5
Joanna Śmietańska, Joanna Śliwiak, Mirosław Gilski, Zbigniew Dauter, Radosław Strzałka, Janusz Wolny, Mariusz Jaskólski, „A new modulated crystal structure of the ANS complex of the St John's wort Hyp-1 protein with 36 protein molecules in the asymmetric unit of the supercell”, Acta Crystallographica Section D - Structural Biology, 76, 653-667, 2020. DOI:10.1107/S2059798320006841
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Malwina Suszyńska, Piotr Kozłowski, „Summary of BARD1 Mutations and Precise Estimation of Breast and Ovarian Cancer Risks Associated with the Mutations”, Genes, 11, art. nr 798, 2020. DOI: 10.3390/genes11070798
Artur Jamrozik, Mateusz Barczewski, Grzegorz Framski, Daniel Baranowski, Paulina Jakubowska, Łukasz Klapiszewski, Teofil Jesionowski, Adam Voelkel, Beata Strzemiecka, „Synthesis and Characterization of Low-Cost Cresol-Based Benzoxazine Resins as Potential Binders in Abrasive Composites”, Materials, 13, art. nr 2995, 2020. DOI: 10.3390/ma13132995
Marta Sikora, Izabela Lewandowska, Łukasz Marczak, Ewa Bretes, Hieronim Jakubowski, „Cystathionine β-synthase deficiency: different changes in proteomes of thrombosis-resistant Cbs(-/-) mice and thrombosis-prone CBS-/- humans”, Scientific Reports, 10, art. nr 10726, 2020. DOI: 10.1038/s41598-020-67672-5
Tomasz Koczorowski, Justyna Ber, Tomasz Sokolnicki, Anna Teubert, Wojciech Szczolko, Tomasz Gośliński, „Electrochemical and catalytic assessment of peripheral bromoaryl-substituted manganese and iron porphyrazines”, Dyes and Pigments, 178, art. nr 108370, 2020. DOI: 10.1016/j.dyepig.2020.108370
Jarosław Piskorz, Jolanta Długaszewska, Weronika Porolnik, Anna Teubert, Jadwiga Mielcarek, „Boron-dipyrromethene derivatives bearing N-alkyl phthalimide and amine substituents of potential application in the photoinactivation of bacteria”, Dyes and Pigments, 178, art. nr 108322, 2020. DOI: 10.1016/j.dyepig.2020.108322
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Dorota Kwiatek, Lucyna Mrówczynska, Natalia Stopikowska, Marcin Runowski, Andrzej Lesicki, Stefan Lis, „Surface Modification of Luminescent Ln(III) Fluoride Core-Shell Nanoparticles with Acetylsalicylic acid (Aspirin): Synthesis, Spectroscopic and in Vitro Hemocompatibility Studies”, ChemMedChem, 15, 1490-1496, 2020. DOI: 10.1002/cmdc.202000269
Christopher A. Schmitt, Christina M. Bergey, Anna Jasińska, Vasily Ramensky, Felicity Burt, Hannes Svardal, Matthew J. Jorgensen, Nelson B. Freimer, Paul J. Grobler, Trudy R. Turner, „ACE2andTMPRSS2variation in savanna monkeys (Chlorocebus spp.): Potential risk for zoonotic/anthroponotic transmission of SARS-CoV-2 and a potential model for functional studies”, Plos One, 15, art. nr e0235106, 2020. DOI: 10.1371/journal.pone.0235106
Anna Brzechwa-Chodzyńska, Michał Zieliński, Mirosław Gilski, Jack M. Harrowfield, Artur R. Stefankiewicz, „Dynamer and Metallodynamer Interconversion: An Alternative View to Metal Ion Complexation”, Inorganic Chemistry, 59, 8552-8561, 2020. DOI:10.1021 acs.inorgchem.0c01019
Anna Philips, Ireneusz Stolarek, Luiza Handschuh, Katarzyna Nowis, Anna Juras, Dawid Trzciński, Wioletta Nowaczewska, Anna Wrzesińska, Jan Potempa, Marek Figlerowicz, „Analysis of oral microbiome from fossil human remains revealed the significant differences in virulence factors of modern and ancien Tannerella forsythia”, BMC Genomics, 21, art. nr 402, 2020. DOI:10.1186/s12864-020-06810-9
Krzysztof Mikołajczak, Piotr Ogrodowicz, Hanna Ćwiek-Kupczyńska, Kathleen Weigelt-Fischer, Srinivasa Reddy Mothukuri, Astrid Junker, Thomas Altmann, Karolina Krystkowiak, Tadeusz Adamski, Maria Surma, Anetta Kuczyńska, Paweł Krajewski, „Image Phenotyping of Spring Barley (Hordeum vulgare L.) RIL Population Under Drought: Selection of Traits and Biological Interpretation”, Frontiers in Plant Science, 11, art. nr 743, 2020. DOI: 10.3389/fpls.2020.00743
Anna Parus, Wiktoria Wilms, Viktoriia Verkhovetska, Grzegorz Framski, Marta Woźniak-Karczewska, Anna Syguda, Beata Strzemiecka, Andrzej Borkowski, Łukasz Ławniczak, Łukasz Chrzanowski, „Transformation of herbicides into dual function quaternary tropinium salts”, New Journal of Chemistry, 44, 8869-8877, 2020. DOI: 10.1039/d0nj01597k
Marta Grzechowiak, Joanna Śliwiak, Mariusz Jaskólski, Miłosz Ruszkowski, „Structural Studies of Glutamate Dehydrogenase (Isoform 1) From Arabidopsis thaliana, an Important Enzyme at the Branch-Point Between Carbon and Nitrogen Metabolism”, Frontiers in Plant Science, 11, art. nr 754, 2020. DOI: 10.3389/fpls.2020.00754
Łukasz Pielok, M. Karczewski, W. Cierach, Paweł Zmora, Elżbieta Lenartowicz, J. Stefaniak, „Portal hypertension as a result of the incomplete surgically treated advanced alveolar echinococcosis: a case description”, BMC Gastroenterology, 20, art. nr 176, 2020. DOI: 10.1186/s12876-020-01320-0
Xin Chen, Wen Wang, Pengyu Xie, Xingong Zhang, Małgorzata Sterna, Jacek Błażewicz, „Exact and heuristic algorithms for scheduling on two identical machines with early work maximization”, Computers & Industrial Engineering, 144, art. nr 106449, 2020. DOI:10.1016/j.cie.2020.106449
Aleksandra Martyna, Maciej Masłyk, Monika Janeczko, Elżbieta Kochanowicz, Bartłomiej Gielniewski, Aleksandra Świercz, Oleg M. Demchuk, Konrad Kubiński, „Antifungal Agent 4-AN Changes the Genome-Wide Expression Profile, Downregulates Virulence-Associated Genes and Induces Necrosis in Candida albicans Cells”, Molecules, 25, art. nr 2928, 2020. DOI:10.3390/molecules25122928
Agnieszka Żmieńko, Małgorzata Marszałek-Zeńczak, Paweł Wojciechowski, Anna Samelak-Czajka, Magdalena Łuczak, Piotr Kozłowski, Wojciech M. Karłowski, Marek Figlerowicz, „AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis Genome”, Plant Cell, 32, 1797-1819, 2020. DOI: 10.1105/tpc.19.00640
Anna Wojakowska, Monika Pietrowska, Piotr Widlak, Dariusz Dobrowolski, Edward Wylegała, Dorota Tarnawska, „Metabolomic Signature Discriminates Normal Human Cornea from Keratoconus-A Pilot GC/MS Study”, Molecules, 25, art. nr 2933, 2020. DOI:10.3390/molecules25122933
Tomasz Żok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak, „New models and algorithms for RNA pseudoknot order assignment”, International Journal of Applied Mathematics and Computer Science, 30, 315-324, 2020. DOI: 10.34768/amcs-2020-0024
Agata Świątkowska, Mariola Dutkiewicz, Piotr Machtel, Damian M. Janecki, Martyna Kabacińska, Paulina Żydowicz-Machtel, Jerzy Ciesiołka, „Regulation of the p53 expression profile by hnRNP K under stress conditions”, RNA Biology, 17, 1402-1415, DOI:10.1080/15476286.2020.1771944
Barbara Ogórek, Lana Hamieh, Hanna M. Hulshof, Kathryn Lasseter, Katarzyna Klonowska, Hugo Kuijf, Romina Moavero, Christoph Hertzberg, Bernhard Weschke, Kate Riney, Martha Feucht, Theresa Scholl, Pavel Krsek, Rima Nabbout, Anna C. Jansen, Barbora Benova, Eleonora Aronica, Lieven Lagae, Paolo Curatolo, Julita Borkowska, Krzysztof Sadowski, Dorota Domańska-Pakiela, Steff Janson, Piotr Kozłowski, Małgorzata Urbańska, Jacek Jaworski, J Sergiusz Jóźwiak, Floor E. Jansen, Katarzyna Kotulska, David J. Kwiatkowski, „TSC2pathogenic variants are predictive of severe clinical manifestations in TSC infants: results of the EPISTOP study”, Genetics in Medicine, 22, 1489-1497, 2020. DOI: 10.1038/s41436-020-0823-4
Paweł Bąkowski, Jakub Kaszyński, Joanna Walecka, Kinga Ciemniewska-Gorzela, Kamilla Bąkowska-Żywicka, Tomasz Piontek, „Autologous adipose tissue injection versus platelet-rich plasma (PRP) injection in the treatment of knee osteoarthritis: a randomized, controlled study- study protocol”, BMC Musculoskeletal Disorders, 21, art. nr 314, 2020. DOI: 10.1186/s12891-020-03345-8
Marta A. Fik-Jaskółka, Anna F. Mkrtchyan, Ashot S. Saghyan, Rosanna Palumbo, Agnieszka Belter, Liana A. Hayriyan, Hayarpi Simonyan, Valentina Roviello, Giovanni N. Roviello, „Biological macromolecule binding and anticancer activity of synthetic alkyne-containing L-phenylalanine derivatives”, Amino Acids, 52, 755-769, 2020. DOI: 10.1007/s00726-020-02849-w
Kornelia Czaja, Jacek Kujawski, Karol Kamel, Marek Bernard, „Selected arylsulphonyl pyrazole derivatives as potential Chk1 kinase ligands-computational investigations”, Journal of Molecular Modeling, 26, art. nr 144, 2020. DOI: 10.1007/s00894-020-04407-3
Bartosz Sekuła, Miłosz Ruszkowski, Zbigniew Dauter, „S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula”, International Journal of Biological Macromolecules, 151, 554-565, 2020. DOI: 10.1016/j.ijbiomac.2020.02.100
Malwina Suszyńska, Magdalena Ratajska, Piotr Kozłowski, „BRIP1, RAD51C, and RAD51D mutations are associated with high susceptibility to ovarian cancer: mutation prevalence and precise risk estimates based on a pooled analysis of similar to 30,000 cases”, Journal of Ovarian Research, 13, art. nr 50, 2020. DOI: 10.1186/s13048-020-00654-3
Agata Ciołak, Włodzimierz J. Krzyżosiak, Emilia Kozłowska, Agnieszka Fiszer, „Generation of human iPS cell line IBCHi002-A from spinocerebellar ataxia type 3/Machado-Joseph disease patient's fibroblasts”, Stem Cell Research, 45, art. nr 101796, 2020. DOI:10.1016/j.scr.2020.101796
Paweł Śledziński, Mateusz Nowaczyk, Marta Olejniczak, „Computational Tools and Resources Supporting CRISPR-Cas Experiments”, Cells, 9, 2020. DOI: 10.3390/cells9051288
Bogna Gryszczyńska, Magdalena Budzyn, Dorota Formanowicz, Maria Wanic-Kossowska, Piotr Formanowicz, Wacław Majewski, Maria Iskra, Magdalena P. Kasprzak, „Selected Atherosclerosis-Related Diseases May Differentially Affect the Relationship between Plasma Advanced Glycation End Products, Receptor sRAGE, and Uric Acid”, Journal of Clinical Medicine, 9, art. nr 1416, 2020. DOI: 10.3390/jcm9051416
Dorota Formanowicz, Agnieszka Rybarczyk, Marcin Radom, Piotr Formanowicz, „A Role of Inflammation and Immunity in Essential Hypertension-Modeled and Analyzed Using Petri Nets”, International Journal of Molecular Sciences, 21, art. nr 3348, 2020. DOI:10.3390/ijms21093348
Aleksandra Jezela-Stanek, Ewa Ciara, Dorota Jurkiewicz, Marzena Kucharczyk, Maria Jędrzejowska, Krystyna H. Chrzanowska, Małgorzata Krajewska-Walasek, Tomasz Żemojtel, „The phenotype-driven computational analysis yields clinical diagnosis for patients with atypical manifestations of known intellectual disability syndromes”, Molecular Genetics & Genomic Medicine, 8, art. nr e1263, 2020. DOI: 10.1002/mgg3.1263
Dariusz Brzeziński, Zbigniew Dauter, Władek Minor, Mariusz Jaskólski, „On the evolution of the quality of macromolecular models in the PDB”, FEBS Journal, 287, 2685-2698, 2020. DOI:10.1111/febs.15314
Arkadiusz Liśkiewicz, Marta Przybyła, Anna Wojakowska, Łukasz Marczak, Katarzyna Bogus, Marta Nowacka-Chmielewska, Daniela Liśkiewicz, Andrzej Małecki, Jarosław Barski, Joanna Lewin-Kowalik, Michał Toborek, „Physical activity reduces anxiety and regulates brain fatty acid synthesis”, Molecular Brain, 13, art. nr 62, 2020. DOI: 10.1186/s13041-020-00592-7
Julia O. Misiorek, Anna M. Schreiber, Martyna O. Urbanek-Trzeciak, Magdalena Jazurek-Ciesiołka, Lauren A. Hauser, David R. Lynch, Jill S. Napierala, Marek Napierała, „A Comprehensive Transcriptome Analysis Identifies FXN and BDNF as Novel Targets of miRNAs in Friedreich's Ataxia Patients”, Molecular Neurobiology, 57, 2639-2653, 2020. DOI:10.1007/s12035-020-01899-1
Adam P. Zarecki, Jacek L. Kolanowski, Wojciech T. Markiewicz, „Microwave-Assisted Catalytic Method for a Green Synthesis of Amides Directly from Amines and Carboxylic Acids”, Molecules, 25, art. nr 1761, 2020. DOI: 10.3390/molecules25081761
Katarzyna B. Czyż, Michał Książkiewicz, Grzegorz Koczyk, Anna Szczepaniak, Jan Podkowiński, Barbara Naganowska, „A Tale of Two Families: Whole Genome and Segmental Duplications Underlie Glutamine Synthetase and Phosphoenolpyruvate Carboxylase Diversity in Narrow-Leafed Lupin (Lupinus angustifolius L.), International Journal of Molecular Sciences, 21, art. nr 2580, 2020. DOI: 10.3390/ijms21072580
Maciej J. Śmiałek, Erkut Ilaslan, Marcin P. Sajek, Aleksandra Świercz, Damian M. Janecki, Kamila Kusz-Zamelczyk, Tomasz Woźniak, Maciej Kotecki, Luiza Handschuh, Marek Figlerowicz, Jadwiga Jaruzelska, „Characterization of RNP Networks of PUM1 and PUM2 Post-Transcriptional Regulators in TCam-2 Cells, a Human Male Germ Cell Model”, Cells, 9, art. nr 984, 2020. DOI: 10.3390/cells9040984
Medhat Mahmoud, Joanna Gracz-Bernaciak, Marek Żywicki, Wojciech Karłowski, Tomasz Twardowski, Agata Tyczewska, „Identification of Structural Variants in Two Novel Genomes of Maize Inbred Lines Possibly Related to Glyphosate Tolerance”, Plants, 9, art. nr 523, 2020. DOI:10.3390/plants9040523
Maciej Jerzy Śmiałek, Bogna Kuczyńska, Erkut Ilaslan, Damian Mikołaj Janecki, Marcin Piotr Sajek, Kamila Kusz-Zamelczyk, Jadwiga Jaruzelska, „Kinesin KIF18A is a novel PUM-regulated target promoting mitotic progression and survival of a human male germ cell line”, Journal of Cell Science, 133, art. nr jcs240986, 2020. DOI: 10.1242/jcs.240986
Damian M. Janecki, Erkut Ilaslan, Maciej J. Śmiałek, Marcin P. Sajek, Maciej Kotecki, Barbara Ginter-Matuszewska, Patryk Kraiński, Jadwiga Jaruzelska, Kamila Kusz-Zamelczyk, „Human NANOS1 Represses Apoptosis by Downregulating Pro-Apoptotic Genes in the Male Germ Cell Line”, International Journal of Molecular Sciences, 21, art. nr 3009, 2020. DOI: 10.3390/ijms21083009
Piotr H. Małecki, Magdalena Bejger, Wojciech Rypniewski, Constantinos E. Vorgias, „The Crystal Structure of a Streptomyces thermoviolaceus Thermophilic Chitinase Known for Its Refolding Efficiency”, International Journal of Molecular Sciences, 21, art. nr 2892, 2020. DOI: 10.3390/ijms21082892
Olga Utyro, Joanna Perła-Kajan, Hieronim Jakubowski, „The Cbs Locus Affects the Expression of Senescence Markers and mtDNA Copy Number, but not Telomere Dynamics in Mice”, International Journal of Molecular Sciences, 21, art. nr 2520, 2020. DOI: 10.3390/ijms21072520
Hong-Ki Yoon, Tomasz Kleiber, Zofia Zydlik, Krzysztof Rutkowski, Agnieszka Woźniak, Sławomir Świerczyński, Waldemar Bednarski, Jacek Kęsy, Łukasz Marczak, Jeong-Hak Seo, Taeg-Yong Choi, Kyeong-Jin Kang, Neisbe Ebru Kafkas, Jan Bocianowski, Philippe Jeandet, Iwona Morkunas, „A Comparison of Selected Biochemical and Physical Characteristics and Yielding of Fruits in Apple Cultivars (Malus domestica Borkh.)”, Agronomy, 10, art. nr 458, 2020. DOI:10.3390/agronomy10040458
Kian Hematy, Melisa Lim, Candice Cherk, Mariola Piślewska-Bednarek, Clara Sanchez-Rodriguez, Monica Stein, Rene Fuchs, Christine Klapprodt, Volker Lipka, Antonio Molina, Erwin Grill, Paul Schulze-Lefert, Paweł Bednarek, Shauna Somerville, „Moonlighting Function of Phytochelatin Synthase1 in Extracellular Defense against Fungal Pathogens(1)([OPEN])”, Plant Physiology, 182, 1920-1932, 2020. DOI: 10.1104/pp.19.01393
Mateusz Jakubowski, Iwona Łakomska, Jerzy Sitkowski, Marta Pokrywczyńska, Paweł Dąbrowski, Grzegorz Framski, Tomasz Ostrowski, „Multinuclear magnetic resonance characterization and antiproliferative studies of novel dichlorido platinum(II) complexes containing kinetin riboside and 1-β-D-ribofuranosyl-4-(2-pyridyl)-1H-1,2,3-triazole”, Polyhedron, 180, art. nr 114428, 2020. DOI: 10.1016/j.poly.2020.114428
Anna J. Jasińska, „Resources for functional genomic studies of health and development in nonhuman primates”, American Journal of Physical Anthropology, 171, 174-194, 2020. DOI:10.1002/ajpa.24051
Justyna Gołębiewska, Jacek Stawiński, „Reaction of Boranephosphonate Diesters with Pyridines or Tertiary Amines in the Presence of Iodine: Synthetic and Mechanistic Studies”, Journal of Organic Chemistry, 85, 4312-4323, 2020. DOI: 10.1021/acs.joc.9b03506
Marta Fik-Jaskółka, Anna F. Mkrtchyan, Ashot S. Saghyan, Rosanno Palumbo, Agnieszka Belter, Liana A. Hayriyan, Hayarpi Simonyan, Valentina Roviello, Giovanni N. Roviello, „Spectroscopic and SEM evidences for G4-DNA binding by a synthetic alkyne-containing amino acid with anticancer activity”, Spectrochimica Acta Part A - Molecular and Biomolecular Spectroscopy, 229, art. nr 117884, 2020. DOI: 10.1016/j.saa.2019.117884
Anna Kotowska-Zimmer, Yuliya Ostrovska, Marta Olejniczak, „Universal RNAi Triggers for the Specific Inhibition of Mutant Huntingtin, Atrophin-1, Ataxin-3, and Ataxin-7 Expression”, Molecular Therapy - Nucleic Acids, 19, 562-571, 2020. DOI: 10.1016/j.omtn.2019.12.012
Julita Piasecka, Elżbieta Lenartowicz, Marta Soszyńska-Jóźwiak, Barbara Szutkowska, Ryszard Kierzek, Elżbieta Kierzek, „RNA Secondary Structure Motifs of the Influenza A Virus as Targets for siRNA-Mediated RNA Interference”, Molecular Therapy - Nucleic Acids, 19, 627-642, 2020. DOI: 10.1016/j.omtn.2019.12.018
Marta Woźniak-Karczewska, Daniel Baranowski, Grzegorz Framski, Łukasz Marczak, Monika Cvancarova, Philippe F. X. Corvini, Łukasz Chrzanowski, „Biodegradation of ritalinic acid by Nocardioides sp. - Novel imidazole-based alkaloid metabolite as a potential marker in sewage epidemiology”, Journal of Hazardous, 385, art. nr 121554, 2020. DOI:10.1016/j.jhazmat.2019.121554
Marta Wojnicka, Agnieszka Szczepańska, Anna Kurzyńska-Kokorniak, „Unknown Areas of Activity of Human Ribonuclease Dicer: A Putative Deoxyribonuclease Activity”, Molecules, 25, art. nr 1414, 2020. DOI: 10.3390/molecules25061414
Wiktoria Wilms, Marta Woźniak-Karczewska, Michał Niemczak, Piotr Lisiecki, Agnieszka Zgoła-Grześkowiak, Łukasz Ławniczak, Grzegorz Framski, Juliusz Pernak, Mikołaj Owsianiak, Carsten Vogt, Anko Fischer, Robin D. Rogers, Łukasz Chrzanowski, „Quantifying the Mineralization of 13C-Labeled Cations and Anions Reveals Differences in Microbial Biodegradation of Herbicidal Ionic Liquids between Water and Soil”, ACS Sustainable Chemistry Enginnering, 8, 3412-3426, 2020. DOI: 10.1021/acssuschemeng.9b07598
Magdalena Dąbrowska, Agata Ciołak, Emilia Kozłowska, Agnieszka Fiszer, Marta Olejniczak, Generation of New Isogenic Models of Huntington's Disease Using CRISPR-Cas9 Technology, International Journal of Molecular Sciences, 21, art. nr 1854, 2020. DOI: 10.3390/ijms21051854
Karolina Piecyk, Maciej Łukaszewicz, Karol Kamel, Maria Janowska, Paulina Pietrow, Sebastian Kmiecik, Marzena Jankowska-Anyszka, „Isoxazole-containing 5' mRNA cap analogues as inhibitors of the translation initiation proces”, Bioorganic Chemistry, 96, art. nr 103583, 2020. DOI: 10.1016/j.bioorg.2020.103583
Nicoletta Makowska, Anna Philips, Mirosława Dabert, Katarzyna Nowis, Artur Trzebny, Ryszard Koczura, Joanna Mokracka, „Metagenomic analysis of -lactamase and carbapenemase genes in the wastewater resistome”, Water Research, 170, art. nr 115277, 2020. DOI:10.1016/j.watres.2019.115277
Elżbieta Kierzek, Ryszard Kierzek, „Conscious uncoupling of riboswitch functions”, Journal of Biological Chemistry, 295, 9, 2568-2569, 2020. DOI: 10.1074/jbc.H120.012787
Anna J. Jasińska, Ivona Pandrea, Tianyu He, Benjamin Cassandra, Maurice Newton, Jen Chieh Lee, Nelson B. Freimer, Giovanni Coppola, James D. Jentsch, „Immunosuppressive effect and global dysregulation of blood transcriptome in response to psychosocial stress in vervet monkeys (Chlorocebus sabaeus)”, Scientific Reports, 10, art. nr 3459, 2020. DOI:10.1038/s41598-020-59934-z
Agnieszka Belter, Jakub Barciszewski, Anna Maria Barciszewska, „Revealing the epigenetic effect of temozolomide on glioblastoma cell lines in therapeutic conditions”, PloS ONE, 15, art. nr e0229534, 2020. DOI: 10.1371/journal.pone.0229534
Colleen A. Stoyas, David D. Bushart, Paweł M. Świtoński, Jacqueline M. Ward, Akshay Alaghatta, Mi-bo Tang, Chenchen Niu, Mandheer Wadhwa, Haoran Huang, Alex Savchenko, Karim Gariani, Fang Xie, Joseph R. Delaney, Terry Gaasterland, Johan Auwerx, Vikram G. Shakkottai, Albert R. La Spada, „Nicotinamide Pathway-Dependent Sirt1 Activation Restores Calcium Homeostasis to Achieve Neuroprotection in Spinocerebellar Ataxia Type 7”, Neuron, 105, 630-644, 2020. DOI: 10.1016/j.neuron.2019.11.019
Mariusz Popenda, Joanna Miśkiewicz, Joanna Sarzyńska, Tomasz Żok, Marta Szachniuk, „Topology-based classification of tetrads and quadruplex structures”, Bioinformatics, 36, 1129-1134, 2020. DOI: 10.1093/bioinformatics/btz738
Joanna Banasiak, Lorenzo Borghi, Natalia Stec, Enrico Martinoia, Michał Jasiński, „The Full-Size ABCG Transporter of Medicago truncatula Is Involved in Strigolactone Secretion, Affecting Arbuscular Mycorrhiza”, Frontiers in Plant Science, 11, art. nr 18, 2020. DOI: 10.3389/fpls.2020.00018
Dorota Jakubczyk, Francois Dussart, „Selected Fungal Natural Products with Antimicrobial Properties”, Molecules, 25, art. nr 911, 2020. DOI: 10.3390/molecules25040911
Karolina Michalska, Marcin Kowiel, Lance Bigelow, Michael Endres, Mirosław Gilski, Mariusz Jaskólski, Andrzej Joachimiak, „3D domain swapping in the TIM barrel of the alpha subunit of Streptococcus pneumoniae tryptophan synthase”, Acta Crystallographica Section D - Structural Biology, 76, 166-175, 2020. DOI: 10.1107/S2059798320000212
Marek Kazimierczyk, Marta K. Kasprowicz, Marta E. Kasprzyk, Jan Wrzesiński, „Human Long Noncoding RNA Interactome: Detection, Characterization and Function”, International Journal of Molecular Sciences, 21, art. nr 1027, 2020. DOI: 10.3390/ijms21031027
Anna J. Jasińska, Dalar Rostamian, Ashley T. Davis, Kylie Kavanagh, „Transcriptomic Analysis of Cell-free Fetal RNA in the Amniotic Fluid of Vervet Monkeys (Chlorocebus sabaeus)”, Comparative Medicine, 70, 67-74, 2020. DOI: 10.30802/AALAS-CM-19-000037
Yasuo Uchida, Ryohei Goto, Hina Takeuchi, Magdalena Łuczak, Takuya Usui, Masanori Tachikawa, Tetsuya Terasaki, „Abundant Expression of OCT2, MATE1, OAT1, OAT3, PEPT2, BCRP, MDR1, and xCT Transporters in Blood-Arachnoid Barrier of Pig and Polarized Localizations at CSF- and Blood-Facing Plasma Membranes”, Drug Metabolism and Disposition, 48, 135-145, 2020. DOI: 10.1124/dmd.119.089516
Kinga Ciechanowska, Agnieszka Szczepańska, Marta Wojnicka, Anna Kurzyńska-Kokorniak, „Non-canonical RNAs Produced by Human Ribonuclease Dicer”, Basic & Clinical Pharmacology & Toxicology, 126, 8-8, SI, 2020. DOI: 10.1111/bcpt.13378
Tomasz Żok, Mariusz Popenda, Marta Szachniuk, „ElTetrado: a tool for identification and classification of tetrads and quadruplexes”, BMC Bioinformatics, 21, art. nr 40, 2020. DOI:10.1186/s12859-020-3385-1
Marcin Magnus, Maciej Antczak, Tomasz Żok, Jakub Wiedemann, Piotr Łukasiak, Yang Cao, Janusz M. Bujnicki, Eric Westhof, Marta Szachniuk, Zhichao Miao, „RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools”, Nucleic Acids Research, 48, 576-588, 2020. DOI: 10.1093/nar/gkz1108
Marcin Kowiel, Dariusz Brzeziński, Mirosław Gilski, Mariusz Jaskólski, „Conformation- dependent restraints for polynucleotides: the sugar moiety”, Nucleic Acids Research, 48, 962-973, 2020. DOI: 10.1093/nar/gkz1122
Mathias B. Danielsen, Chenguang Lou, Jolanta Lisowiec-Wąchnicka, Anna Pasternak, Per T. Jorgensen, Jesper Wengel, „Gapmer Antisense Oligonucleotides Containing 2 ',3 '-Dideoxy-2 '-fluoro-3 '-C-hydroxymethyl-beta-d-lyxofuranosyl Nucleotides Display Site-Specific RNase H Cleavage and Induce Gene Silencing”, Chemistry - A European Journal, 26, 1368-1379, 2020. DOI: 10.1002/chem.201904540
Marcin Piotr Sajek, Tomasz Woźniak, Mathias Sprinzl, Jadwiga Jaruzelska, Jan Barciszewski, „T-psi-C: user friendly database of tRNA sequences and structures”, Nucleic Acids Reserach, 48, D256-D260, 2020. DOI: 10.1093/nar/gkz922
Jan Nekvinda, Daria Rożycka, Sebastian Rykowski, Eliza Wyszko, Agnieszka Fedoruk-Wyszomirska, Dorota Gurda, Marta Orlicka-Płocka, Małgorzata Giel-Pietraszuk, Agnieszka Kiliszek, Wojciech Rypniewski, Rafał Bachorz, Jakub Wojcieszak, Bohumir Gruner, Agnieszka B. Olejniczak, „Synthesis of naphthalimide-carborane and metallacarborane conjugates: Anticancer activity, DNA binding ability”, Bioorganic Chemistry, 94, art. nr 103432, 2020. DOI:10.1016/j.bioorg.2019.103432
Magdalena Dąbrowska, Marta Olejniczak, „Gene Therapy for Huntington's Disease Using Targeted Endonucleases”, Trinucleotide Repeats: Methods and Protocols, 2056, 269-284, 2020. DOI: 10.1007/978-1-4939-9784-8_17
Anna R. Stasińska, Piotr Putaj, Marcin K. Chmielewski, „Disulfide bridge as a linker in nucleic acids' bioconjugation. Part II: A summary of practical applications”, Bioorganic Chemistry, 95, art. nr 103518, 2020. DOI: 10.1016/j.bioorg.2019.103518

2019

Miłosz Ruszkowski, Bartosz Sekuła, Agnieszka Ruszkowska, Roberto Contestabile, Isabel Nogues, Nogues, Sebastiana Angelaccio, Andrzej Szczepaniak, Zbigniew Dauter, „Structural basis of methotrexate and pemetrexed action on serine hydroxymethyltransferases revealed using plant models”, Scientific Reports, 9, art. nr 19614, 2019. DOI: 10.1038/s41598-019-56043-4
Tomasz Machałowski, Marcin Wysokowski, Sonia Żółtowska-Aksamitowska, Nicole Bechmann, Björn Binnewerg, Mario Schubert, Kaomei Guan, Stefan R. Bornstein, Katarzyna Czaczyk, Oleg Pokrovsky, Michael Kraft, Martin Bertau, Christian Schimpf, David Rafaja, Mikhail Tsurkan, Roberta Galli, Heike Meissner, Iaroslav Petrenko, Andriy Fursov, Alona Voronkina, Marek Figlerowicz, Yvonne Joseph, Teofil Jesionowski, Hermann Ehrlich, „Spider Chitin. The biomimetic potential and applications of Caribena versicolor tubular chitin”, Carbohydarte Polymers, 226, art. nr 115301, 2019. DOI: 10.1016/j.carbpol.2019.115301
Marek Kazimierczyk, Agata Jędroszkowiak, Dorota Kowalczykiewicz, Maciej Szymański, Barbara Imiołczyk, Jerzy Ciesiołka, Jan Wrzesiński, „tRNA-derived fragments from the Sus scrofa tissues provide evidence of their conserved role in mammalian development”, Biochemical and Biophysical Research Communications, 520, 514-519, 2019. DOI: 10.1016/j.bbrc.2019.10.062
Anna M. Mleczko, Piotr Machtel, Mateusz Walkowiak, Anna Wasilewska, Piotr J. Pietras, Kamilla Bąkowska-Żywicka, „Levels of sdRNAs in cytoplasm and their association with ribosomes are dependent upon stress conditions but independent from snoRNA expression”, Scientific Reports, 9, art. nr 18397, 2019. DOI: 10.1038/s41598-019-54924-2
Kyle J. Messina, Ryszard Kierzek, Matthew A. Tracey, Philip C. Bevilacqua, „Small Molecule Rescue and Glycosidic Conformational Analysis of the Twister Ribozyme”, Biochemistry, 58, 4857-4868, 2019. DOI: 10.1021/acs.biochem.9b00742
Izabela Kruszelnicka, Dobrochna Ginter-Kramarczyk, Bogdan Wyrwas, Jakub Idkowiak, „Evaluation of surfactant removal efficiency in selected domestic wastewater treatment plants in Poland”, Journal of Environmental Health Science and Engineering, 17, 1257–1264, 2019. DOI: 10.1007/s40201-019-00387-6
Agnieszka Troszok, Ludmiła Kolek, Joanna Szczygieł, Tomasz Ostrowski, Mikołaj Adamek, Ilgiz Irnazarow, „Anti-CyHV-3 effect of fluorescent, tricyclic derivative of acyclovir 6-(4-MeOPh)-TACV in vitro”, Journal of Veterinary Research, 63, 513-518, 2019. DOI: 10.2478/jvetres-2019-0065
Kalina Wiatr, Piotr Piasecki, Łukasz Marczak, Paweł Wojciechowski, Małgorzata Kurkowiak, Rafał Płoski, Małgorzata Rydzanicz, Luiza Handschuh, Johannes Jungverdorben, Oliver Brüstle, Marek Figlerowicz, Maciej Figiel, „Altered Levels of Proteins and Phosphoproteins, in the Absence of Early Causative Transcriptional Changes, Shape the Molecular Pathogenesis in the Brain of Young Presymptomatic Ki91 SCA3/MJD Mouse”, Molecular Neurobiology, 56, 8168–8202, 2019. DOI: 10.1007/s12035-019-01643-4
Szymon Hryhorowicz, Marta Kaczmarek-Ryś, Angelika Andrzejewska, Klaudia Staszak, Magdalena Hryhorowicz, Aleksandra Korcz, Ryszard Słomski, „Allosteric Modulation of Cannabinoid Receptor 1—Current Challenges and Future Opportunities”, International Journal of Molecular Sciences, 20, art. nr 5874, 2019. DOI: 10.3390/ijms20235874
Jędrzej Musiał, Emmanuel Kieffer, Mateusz Guzek, Gregoire Danoy, Shyam S. Wagle, Pascal Bouvry, Jacek Błażewicz, „Cloud Brokering with Bundles: Multi-objective Optimization of Services Selection”, Foundations of Computing and Decision Sciences, 44, 407-426, 2019. DOI: 10.2478/fcds-2019-0020
Sanjukta Mukherjee, Leszek Błaszczyk, Wojciech Rypniewski, Christoph Falschlunger, Ronald Micura, Asako Murata, Chikara Dohno, Kazuhiko Nakatani, Agnieszka Kiliszek, „Structural insights into synthetic ligands targeting A–A pairs in disease-related CAG RNA repeats”, Nucleic Acids Research, 47, 10906-10913, 2019. DOI: 10.1093/nar/gkz832
Indrajit Deb, Łukasz Popenda, Joanna Sarzyńska, Magdalena Małgowska, Ansuman Lahiri, Zofia Gdaniec, Ryszard Kierzek, „Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair”, Scientific Reports, 9, art. nr 16278, 2019. DOI: 10.1038/s41598-019-52637-0
Ewa Woźniak, Ewa Waszkowska, Tomasz Zimny, Sławomir Sowa, Tomasz Twardowski, „The Rapeseed Potential in Poland and Germany in the Context of Production, Legislation, and Intellectual Property Rights”, Frontiers in Plant Science, 10, art. nr 1423, 2019. DOI: 10.3389/fpls.2019.01423
Daniel Baranowski, Grzegorz Framski, Eliza Wyszko, Tomasz Ostrowski, „Studies on structure of kinetin riboside and its analogues by variable-temperature NMR”, Journal of Molecular Structure, 1195, 110-118, 2019. DOI: 10.1016/j.molstruc.2019.05.112
Natalia Bartyś, Ryszard Kierzek, Jolanta Lisowiec-Wąchnicka, „The regulation properties of RNA secondary structure in alternative splicing”, Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 1862, art. nr 194401, 2019. DOI: 10.1016/j.bbagrm.2019.07.002
Agata Świątkowska, Mariola Dutkiewicz, Paulina Żydowicz-Machtel, Joanna Szpotkowska, Damian M. Janecki, Jerzy Ciesiołka, „Translational Control in p53 Expression: The Role of 5′-Terminal Region of p53 mRNA”, International Journal of Molecular Sciences, 20, art. nr 5382, 2019. DOI: 10.3390/ijms20215382
Monika Bilska-Markowska, Anna Szwajca, Bartosz Marciniak, „Design, properties and applications of fluorinated and fluoroalkylated N-containing monosaccharides and their analogues”, Journal of Fluorine Chemistry, 227, art. nr 109364, 2019. DOI: 10.1016/j.jfluchem.2019.109364
Agnieszka Witkowska, Jolanta Brzezińska, Tomasz Pedziński, Marcin K. Chmielewski, „Fluorescent 2-(Pyridin-2-yl)vinyl Pyridine Dyes and Their Thermocontrolled Release”, Journal of Organic Chemistry, 84, 13447-13456, 2019. DOI: 10.1021/acs.joc.9b01620
Anna R. Stasińska, Piotr Putaj, Marcin K. Chmielewski, „Disulfide bridge as a linker in nucleic acids’ bioconjugation. Part I: An overview of synthetic strategies”, Bioorganic Chemistry, 92, art. nr 103223, 2019. DOI: 10.1016/j.bioorg.2019.103223
Stanisław Wosicki, Mirosław Gilski, Helena Zabranska, Iva Pichova, Mariusz Jaskólski, „Comparison of a retroviral protease in monomeric and dimeric states”, Acta Crystallographica Section D - Structural Biology, 75, 904-917, 2019. DOI: 10.1107/S2059798319011355
Agnieszka Szuba, Łukasz Marczak, Leszek Karliński, Joanna Mucha, Dominik Tomaszewski, „Regulation of the leaf proteome by inoculation of Populus × canescens with two Paxillus involutus isolates differing in root colonization rates”, Mycorrhiza, 29, 503–517, 2019. DOI: 10.1007/s00572-019-00910-5
Tomasz Machałowski, Marcin Wysokowski, Mikhail V. Tsurkan, Roberta Galli, Christian Schimpf, David Rafaja, Erica Brendler, Christine Viehweger, Sonia Żółtowska-Aksamitowska, Iaroslav Petrenko, Katarzyna Czaczyk, Michael Kraft, Martin Bertau, Nicole Bechmann, Kaomei Guan, Stefan R. Bornstein, Alona Voronikina, Andriy Fursov, Magdalena Bejger, Katarzyna Biniek-Antosiak, Wojciech Rypniewski, Marek Figlerowicz, Oleg Pokrovsky, Teofil Jesionowski, Hermann Ehrlich, „Spider Chitin: An Ultrafast Microwave-Assisted Method for Chitin Isolation from Caribena versicolor Spider Molt Cuticle”, Molecules, 24, art. nr 3736, 2019. DOI: 10.3390/molecules24203736
Carolina Roxo, Weronika Kotkowiak, Anna Pasternak, „G-Quadruplex-Forming Aptamers—Characteristics, Applications, and Perspectives”, Molecules, 24, art. nr 3781, 2019. DOI: 10.3390/molecules24203781
Magdalena Jazurek-Ciesiołka, Justyna Janikiewicz, Paweł Dobrzyn, Anna Dziewulska, Kamil Koziński, Agnieszka Dobrzyn, „Oleic acid increases the transcriptional activity of FoxO1 by promoting its nuclear translocation and β-catenin binding in pancreatic β-cells”, Biochimica et Biophysica Acta - Molecular Basis of Disease, 1865, 2753-2764, 2019. DOI: 10.1016/j.bbadis.2019.06.018
Marta Pastorczyk, Ayumi Kosaka, Mariola Piślewska‐Bednarek, Gemma López, Henning Frerigmann, Karolina Kułak, Erich Glawischnig, Antonio Molina, Yoshitaka Takano, Paweł Bednarek, „The role of CYP71A12 monooxygenase in pathogen‐triggered tryptophan metabolism and Arabidopsis immunity”, New Phytologist, 225, 400-412, 2019. DOI: 10.1111/nph.16118
Marcin Radom, Magdalena A. Machnicka, Joanna Krwawicz, Janusz M. Bujnicki, Piotr Formanowicz, „Petri net–based model of the human DNA base excision repair pathway”, Plos One, 14, art. nr e0217913, 2019. DOI: 10.1371/journal.pone.0217913
Karol Czubak, Saam Sedehizadeh, Piotr Kozłowski, Marzena Wojciechowska, „ An Overview of Circular RNAs and Their Implications in Myotonic Dystrophy”, International Journal of Molecular Sciences, 20, art. nr 4385, 2019. DOI: 10.3390/ijms20184385
Tomasz Koczorowski, Tomasz Rębiś, Wojciech Szczolko, Paulina Antecka, Anna Teubert, Grzegorz Milczarek, Tomasz Gośliński, „Reduced graphene oxide/iron(II) porphyrazine hybrids on glassy carbon electrode for amperometric detection of NADH and L-cysteine”, Journal of Electroanalytical Chemistry, 848, art. nr 113322, 2019. DOI: 10.1016/j.jelechem.2019.113322
Julita Gumna, Katarzyna J. Purzycka, Hyo Won Ahn, David J. Garfinkel, Katarzyna Pachulska-Wieczorek, „Retroviral-like determinants and functions required for dimerization of Ty1 retrotransposon RNA”, RNA Biology, 16, 1749-1763, 2019. DOI: 10.1080/15476286.2019.1657370
Anna-Maria Barciszewska, Małgorzata Giel-Pietraszuk, Patrick M. Perrigue, Mirosława Naskręt-Barciszewska, „Total DNA Methylation Changes Reflect Random Oxidative DNA Damage in Gliomas”, Cells, 8, art. nr 1065, 2019. DOI: 10.3390/cells8091065
Szymon P. Nowak, Paweł Zmora, Łukasz Pielok, Łukasz Kuszel, Ryszard Kierzek, Jerzy Stefaniak, and Małgorzata Paul, „Case of Plasmodium knowlesi Malaria in Poland Linked to Travel in Southeast Asia”, Emerging Infectious Diseases, 25, 1772-1773, 2019. DOI: 10.3201/eid2509.190445
Kaja Gutowska, Dorota Fromanowicz, Piotr Formanowicz, „Selected Aspects of Tobacco-Induced Prothrombotic State, Inflammation and Oxidative Stress: Modeled and Analyzed Using Petri Nets”, Interdisciplinary Sciences: Computational Life Sciences, 11, 373–386, 2019. DOI: 10.1007/s12539-018-0310-7
Marta Grzechowiak, Miłosz Ruszkowski, Joanna Śliwiak, Kamil Szpotkowski, Michał Sikorski, Mariusz Jaskólski, „Crystal structures of plant inorganic pyrophosphatase, an enzyme with a moonlighting autoproteolytic activity”, Biochemical Journal, 476, 2297-2319, 2019. DOI: 10.1042/BCJ20190427
Munir A. Al-Zeer, Mariola Dutkiewicz, Annekathrin von Hacht, Denise Kreuzmann, Viola Röhrs, Jens Kurreck, „Alternatively spliced variants of the 5’-UTR of the ARPC2 mRNA regulate translation by an internal ribosome entry site (IRES) harboring a guanine-quadruplex motif”, RNA Biology, 16, 1622-1632, DOI: 10.1080/15476286.2019.1652524
Joanna Kwiczak-Yiğitbaşı, Jean-Luc Pirat, David Virieux, Jean-Noël Volle, Agnieszka Janiak, Marcin Hoffmann, Jakub Mrzygłód, Dariusz Wawrzyniak, Jan Barciszewski, Donata Pluskota-Karwatka, „Synthesis, structural studies and biological properties of some phosphono-perfluorophenylalanine derivatives formed by SNAr reactions”, RSC Advances, 9, 24117-24133, 2019. DOI: 10.1039/c9ra03982a
Dagmara Baraniak, Piotr Ruszkowski, Daniel Baranowski, Grzegorz Framski, Jerzy Boryski, „Nucleoside dimers analogs containing floxuridine and thymidine with unnatural linker groups: synthesis and cancer line studies. Part III”, Nucleosides, Nucleotides & Nucleic Acids, 38, 980-1005, 2019. DOI: 10.1080/15257770.2019.1641206
Łukasz Gutowski, Kaja Gutowska, Maria Pioruńska-Stolzmann, Piotr Formanowicz, Dorota Formanowicz, „Systems Approach to Study Associations between OxLDL and Abdominal Aortic Aneurysms”, International Journal of Molecular Sciences, 20, art. nr 3909, 2019. DOI: 10.3390/ijms20163909
Karolina Sobańska, Joanna Cerazy-Waliszewska, Monika Kowalska Magdalena Rakoczy Jan Podkowiński, Aurelia Ślusarkiewicz-Jarzina, Aleksandra Ponitka Stanisław Jeżowski, Tomasz Pniewski, „Optimised expression cassettes of hpt marker gene for biolistic transformation of Miscanthus sacchariflorus”, Biomass & Bioenergy, 127, art. nr 105255, 2019. DOI: 10.1016/j.biombioe.2019.105255
Emilia Kozłowska, Agata Ciołak, Marta Olejniczak, Agnieszka Fiszer, „Generation of human iPS cell line IBCHi001-A from dentatorubral–pallidoluysian atrophy patient's fibroblasts”, Stem Cell Research, 39, art. nr 101512, 2019. DOI: 10.1016/j.scr.2019.101512
Katarzyna Kulcenty , Joanna P. Wróblewska, Marcin Ruciński, Emilia Kozłowska, Karol Jopek, Wiktoria M. Suchorska, „MicroRNA Profiling During Neural Differentiation of Induced Pluripotent Stem Cells”, International Journal of Molecular Sciences, 20, art. nr 3651, 2019. DOI: 10.3390/ijms20153651
Alan Ann Lerk Ong, Jiazi Tan, Malini Bhadra, Clément Dezanet, Kiran M. Patil, Mei Sian Chong, Ryszard Kierzek, Jean-Luc Decout, Xavier Roca, Gang Chen, „RNA Secondary Structure-Based Design of Antisense Peptide Nucleic Acids for Modulating Disease-Associated Aberrant Tau Pre-mRNA Alternative Splicing”, Molecules, 24, art. nr 3020, 2019. DOI: 10.3390/molecules24163020
Mohamed T. M. Nemr, Mahmoud N. M. Yousif, Jan Barciszewski, „Interaction of small molecules with polynucleotide repeats and frameshift site RNA”, Archiv der Pharmazie, 352, art. nr 1900062, 2019. DOI: 10.1002/ardp.201900062
Luiza Handschuh, „Not Only Mutations Matter: Molecular Picture of Acute Myeloid Leukemia Emerging from Transcriptome Studies”, Journal of Oncology, 2019, art. nr 7239206, 2019. DOI: 10.1155/2019/7239206
Tomasz Zimny, Sławomir Sowa, Agata Tyczewska, Tomasz Twardowski, „Certain new plant breeding techniques and their marketability in the context of EU GMO legislation – recent developments”, New Biotechnology, 51, 49-56, 2019. DOI: 10.1016/j.nbt.2019.02.003
Karol Czubak, Katarzyna Taylor, Agnieszka Piasecka, Krzysztof Sobczak, Katarzyna Kozłowska, Anna Philips, Saam Sedehizadeh, J. David Brook, Marzena Wojciechowska, Piotr Kozłowski, „Global Increase in Circular RNA Levels in Myotonic Dystrophy”, Frontiers in Genetics, 10, art. nr 649, 2019. DOI: 10.3389/fgene.2019.00649
Jacek Błażewicz, Xin Chen, Richard C. T. Lee, Bertrand M. T. Lin, Feng-Cheng Lin, Erwin Pesch, „Clarification of lower bounds of two-machine flow-shop scheduling to minimize total late work”, Engineering Optimization, 51, 1279-1280, 2019. DOI: 10.1080/0305215X.2018.1554066
Xin Chen, Zhongyu Wang, Erwin Pesch, Małgorzata Sterna, Jacek Błażewicz, „Two-machine flow-shop scheduling to minimize total late work: revisited”, Engineering Optimization, 51, 1268-1278, 2019. DOI: 10.1080/0305215X.2018.1519073
Alfredo Aguilar, Tomasz Twardowski, Roland Wohlgemuth, „Bioeconomy for Sustainable Development”, Biotechnology Journal, 14, art. nr 1800638, 2019. DOI: 10.1002/biot.201800638
Aneta Zebrowska, Agata Skowronek, Anna Wojakowska, Piotr Widlak, Monika Pietrowska, „Metabolome of Exosomes: Focus on Vesicles Released by Cancer Cells and Present in Human Body Fluids”, International Journal of Molecular Sciences, 20, art. nr 3461, 2019. DOI: 10.3390/ijms20143461
Paweł Rodziewicz, Stefan Loroch, Łukasz Marczak, Albert Sickmann, Oliver Kayser, „Cannabinoid synthases and osmoprotective metabolites accumulate in the exudates of Cannabis sativa L. glandular trichomes”, Plant Science, 284, 108-116, 2019. DOI: 10.1016/j.plantsci.2019.04.008
MengJie Hu, Keith E. Schulze, Reena Ghildyal, Darren C. Henstridge, Jacek L. Kolanowski, Elizabeth J New, Yuning Hong, Alan C Hsu, Philip M. Hansbro, Peter AB. Wark, Marie A. Bogoyevitch, David A. Jans, „Respiratory syncytial virus co-opts host mitochondrial function to favour infectious virus production”, Elife, 8, art. nr e42448, 2019. DOI: 10.7554/eLife.42448
Tarik J. Ozumerzifon, Robert F. Higgins, Justin P. Joyce, Jacek L. Kolanowski, Anthony K. Rappé, Matthew P. Shores, „Evidence for Reagent-Induced Spin-State Switching in Tripodal Fe(II) Iminopyridine Complexes”, Inorganic Chemistry, 58, 7785-7793, 2019. DOI: 10.1021/acs.inorgchem.9b00340
Dagmara Baraniak, Daniel Baranowski, Piotr Ruszkowski, Jerzy Boryski, „Nucleoside dimers analogues with a 1,2,3-triazole linkage: conjugation of floxuridine and thymidine provides novel tools for cancer treatment. Part II”, Nucleosides, Nucleotides & Nucleic Acids, 38, 807-835, 2019. DOI: 10.1080/15257770.2019.1610891
Marta Sikora, Izabela Lewandowska, Małgorzata Kupc, Jolanta Kubalska, Ałła Graban, Łukasz Marczak, Radosław Kaźmierski, Hieronim Jakubowski, „Serum Proteome Alterations in Human Cystathionine β-Synthase Deficiency and Ischemic Stroke Subtypes”, International Journal of Molecular Sciences, 20, art. nr 3096, 2019. DOI: 10.3390/ijms20123096
Paulina Bierwagen, Kamil Szpotkowski, Mariusz Jaskólski, Anna Urbanowicz, „Borrelia outer surface protein C is capable of human fibrinogen binding”, FEBS Journal, 286, 2415-2428, 2019. DOI: 10.1111/febs.14810
Marta Szachniuk, „RNApolis: Computational Platform for RNA Structure Analysis”, Foundations of Computing and Decision Sciences, 44, 241-257, 2019. DOI: 10.2478/fcds-2019-0012
Małgorzata Grabowska, Dariusz Wawrzyniak, Katarzyna Rolle, Piotr Chomczyński, Stefan Oziewicz, Stefan Jurga, Jan Barciszewski, „Let food be your medicine: nutraceutical properties of lycopene”, Food & Function, 10, 3090-3102, 2019. DOI: 10.1039/c9fo00580c
Paulina Gałka-Marciniak, Martyna Olga Urbanek-Trzeciak, Paulina Maria Nawrocka, Agata Dutkiewicz, Maciej Giefing, Marzena Anna Lewandowska, Piotr Kozłowski, „Somatic Mutations in miRNA Genes in Lung Cancer—Potential Functional Consequences of Non-Coding Sequence Variants”, Cancers, 11, art. nr 793, 2019. DOI: 10.3390/cancers11060793
Malwina Suszyńska, Wojciech Kluźniak, Dominika Wokolorczyk, Anna Jakubowska, Tomasz Huzarski, Jacek Gronwald, Tadeusz Debniak, Marek Szwiec, Magdalena Ratajska, Katarzyna Klonowska, Steven Narod, Natalia Bogdanova, Thilo Dörk, Jan Lubiński, Cezary Cybulski, Piotr Kozłowski, „BARD1 is a Low/Moderate Breast Cancer Risk Gene: Evidence Based on an Association Study of the Central European p.Q564X Recurrent Mutation”, Cancers, 11, art. nr 740, 2019. DOI: 10.3390/cancers11060740
Adnan Khan Niazi, Etienne Delannoy, Rana Khalid Iqbal, Daria Mileshina, Romain Val, Marta Gabryelska, Eliza Wyszko, Ludivine Soubigou-Taconnat, Maciej Szymański, Jan Barciszewski, Frédérique Weber-Lotfi, José Manuel Gualberto, André Dietrich, „Mitochondrial Transcriptome Control and Intercompartment Cross-Talk During Plant Development”, Cells, 8, art. nr 583, 2019. DOI: 10.3390/cells8060583
Juan Francisco Carrascoza Mayén, Jakub Rydzewski, Natalia Szóstak, Jacek Błażewicz, Wiesław Nowak, „ Prebiotic Soup Components Trapped in Montmorillonite Nanoclay Form New Molecules: Car-Parrinello Ab Initio Simulations”, Life-Basel, 9, art. nr 46, 2019. DOI: 10.3390/life9020046
Łukasz Pielok, Szymon Nowak, Matylda Kłudkowska, Krystyna Frąckowiak, Łukasz Kuszel, Paweł Zmora, Jerzy Stefaniak, „Massive Cryptosporidium infections and chronic diarrhea in HIV-negative patients”, Parasitology Research, 118, 1937–1942, 2019. DOI: 10.1007/s00436-019-06302-0
Izabela Muszalska, Monika A. Leśniewska-Kowiel, Tomasz Ostrowski, „Comparative analysis of stability of tricyclic analogues of acyclovir in an acidic environment”, Reaction Kinetics Mechanisms and Catalysis, 127, 283–299, 2019. DOI: 10.1007/s11144-019-01553-5
Paweł Rodziewicz, Klaudia Chmielewska, Aneta Sawikowska, Łukasz Marczak, Magdalena Łuczak, Paweł Bednarek, Krzysztof Mikołajczak, Piotr Ogrodowicz, Anetta Kuczyńska, Paweł Krajewski, Maciej Stobiecki, „Identification of drought responsive proteins and related proteomic QTLs in barley”, Journal of Experimental Botany, 70, 2823–2837, 2019. DOI: 10.1093/jxb/erz075
Aleksandra Pawela, Joanna Banasiak, Wanda Biała, Enrico Martinoia, Michał Jasiński, „MtABCG20 is an ABA exporter influencing root morphology and seed germination of Medicago truncatula”, Plant Journal, 98, 511-523, 2019. DOI: 10.1111/tpj.14234
Agata Abramowicz, Anna Wojakowska, Łukasz Marczak, Małgorzata Łysek-Gładysińska, Mateusz Smolarz, Michael D. Story, Joanna Polańska, Piotr Widlak, Monika Pietrowska, „Ionizing radiation affects the composition of the proteome of extracellular vesicles released by head-and-neck cancer cells in vitro”, Journal of Radiation Research, 60, 289-297, 2019. DOI: 10.1093/jrr/rrz001
Ireneusz Stolarek, Luiza Handschuh, A. Juras, W. Nowaczewska, H. Kóčka-Krenz, A. Michałowski, J. Piontek, Piotr Kozłowski, Marek Figlerowicz, „Goth migration induced changes in the matrilineal genetic structure of the central-east European population”, Scientific Reports, 9, art. nr 6737, 2019. DOI: 10.1038/s41598-019-43183-w
Malwina Suszyńska, Katarzyna Klonowska, Anna J. Jasińska, Piotr Kozłowski, „Large-scale meta-analysis of mutations identified in panels of breast/ovarian cancer-related genes - Providing evidence of cancer predisposition genes”, Gynecologic Oncology, 153, 452-462, 2019. DOI: 10.1016/j.ygyno.2019.01.027
Dennis Eriksson, Eugénia de Andrade, Borut Bohanec, Sevasti Chatzopoulou, Roberto Defez, Nélida Leiva Eriksson, Piet van der Meer, Bernd van der Meulen, Anneli Ritala, László Sági, Joachim Schiemann, Tomasz Twardowski, Tomáš Vaněk, „Implementing an EU opt-in mechanism for GM crop cultivation”, EMBO Reports, 20, art. nr e48036, 2019. DOI: 10.15252/embr.201948036
Adam Kozak, Tomasz Głowacki, Piotr Formanowicz, „A method for constructing artificial DNA libraries based on generalized de Bruijn sequences”, Discrete Applied Mathematics, 259, 127-144, 2019. DOI: 10.1016/j.dam.2018.12.029
Martyna Nowacka, Humberto Fernandes, Agnieszka Kiliszek, Agata Bernat, Grzegorz Lach, Janusz M. Bujnicki, „Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com”, Plos One, 14, e0214481, 2019. DOI: 10.1371/journal.pone.0214481
Anna Parus, Grzegorz Framski, Wojciech Rypniewski, Katarzyna Panasiewicz, Piotr Szulc, Kamila Myszka, Agnieszka Zgoła-Grześkowiak, Łukasz Ławniczak, Łukasz Chrzanowski, „Plant growth promoting N-alkyltropinium bromides enhance seed germination, biomass accumulation and photosynthesis parameters of maize (Zea mays)”, New Journal of Chemistry, 43, 5805-5812, 2019. DOI: 10.1039/c8nj06298f
Sonja Ludwig, Łukasz Marczak, Priyanka Sharma, Agata Abramowicz, Marta Gawin, Piotr Widlak, Theresa L. Whiteside, Monika Pietrowska, „Proteomes of exosomes from HPV(+) or HPV(-) head and neck cancer cells: differential enrichment in immunoregulatory proteins”, Oncoimmunology, 8, art. nr e1593808, 2019. DOI: 10.1080/2162402X.2019.1593808
Mirosław Gilski, Jianbo Zhao, Marcin Kowiel, Dariusz Brzeziński, Douglas H. Turner, Mariusz Jaskólski, „Accurate geometrical restraints for Watson-Crick base pairs”, Acta Crystallographica Section B - Structural Science Crystal Engineering and Materials, 75, 235-245, 2019. DOI: 10.1107/S2052520619002002
Marlena Dudek-Makuch, Elżbieta Studzińska-Sroka, Katarzyna Korybalska, Natasza Czepulis, Joanna Łuczak, Rafał Rutkowski, Łukasz Marczak, Jolanta Długaszewska, Karolina Grabowska, Maciej Stobiecki, Judyta Cielecka-Piontek, Wiesława Bylka, Janusz Witowski, „Biological activity of Aesculus hippocastanum flower extracts on vascular endothelial cells cultured in vitro”, Phytochemistry Letters, 30, 367-375, 2019. DOI: 10.1016/j.phytol.2019.02.031
Jiazi Tan, Lixia Yang, Alan Ann Lerk Ong, Jiahao Shi, Zhensheng Zhong, Mun Leng Lye, Shiyi Liu, Jolanta Lisowiec-Wąchnicka, Ryszard Kierzek, Xavier Roca, Gang Chen, „A Disease-Causing Intronic Point Mutation C19G Alters Tau Exon 10 Splicing via RNA Secondary Structure Rearrangement”, Biochemistry, 58, 1565-1578, 2019. DOI: 10.1021/acs.biochem.9b00001
Jan Barciszewski, Maria A. Ciemerych, Tomasz Twardowski, „Novel insights and innovations in biotechnology towards improved quality of life”, New Biotechnology, 49, 58-65, 2019. DOI: 10.1016/j.nbt.2018.09.001
Małgorzata Grabowska, Bartosz F. Grześkowiak, Kosma Szutkowski, Dariusz Wawrzyniak, Paweł Głodowicz, Jan Barciszewski, Stefan Jurga, Katarzyna Rolle, Radosław Mrówczyński, „Nano-mediated delivery of double-stranded RNA for gene therapy of glioblastoma multiforme”, Plos One, 14, art. nr e0213852, 2019. DOI: 10.1371/journal.pone.0213852
Weronika Kotkowiak, Jesper Wengel, Chris J. Scotton, Anna Pasternak, „Improved RE31 Analogues Containing Modified Nucleic Acid Monomers: Thermodynamic, Structural, and Biological Effects”, Journal of Medicinal Chemistry, 62, 2499–2507, 2019. DOI: 10.1021/acs.jmedchem.8b01806
Michał Gładysz, Witold Andrałojć, Tomasz Czapik, Zofia Gdaniec, Ryszard Kierzek, „Thermodynamic and structural contributions of the 6-thioguanosine residue to helical properties of RNA”, Scientific Reports, 9, art. nr 4385, 2019. DOI: 10.1038/s41598-019-40715-2
Paula Michalak, Marta Soszyńska-Jóźwiak, Ewa Biała, Walter N. Moss, Julita Kęsy, Barbara Szutkowska, Elżbieta Lenartowicz, Ryszard Kierzek, Elżbieta Kierzek, „Secondary structure of the segment 5 genomic RNA of influenza A virus and its application for designing antisense oligonucleotides”, Scientific Reports, 9, art. nr 3801, 2019. DOI: 10.1038/s41598-019-40443-7
Lucyna Michalska, Dariusz Wawrzyniak, Agnieszka Szymańska-Michalak, Jan Barciszewski, Jerzy Boryski, Dagmara Baraniak, „Synthesis and biological assay of new 2’-deoxyuridine dimers containing a 1,2,3-triazole linker. Part I”, Nucleosides, Nucleotides & Nucleic Acids, 38, 218-235, 2019. DOI: 10.1080/15257770.2018.1514122
Agnieszka Kiliszek, Wojciech Rypniewski, Kamila Rząd, Sławomir Milewski, Iwona Garbiel, „Crystal structures of aminotransferases Aro8 and Aro9 from Candida albicans and structural insights into their properties”, Journal of Structural Biology, 205, 26-33, 2019. DOI: 10.1016/j.jsb.2019.02.001
Julita Kęsy, Kiran M. Patil, Subaschandrabose Rajesh Kumar, Zhiyu Shu, Hui Yee Yong, Louis Zimmermann, Alan Ann Lerk Ong, Desiree-Faye Kaixin Toh, Manchugondanahalli S. Krishna, Lixia Yang, Jean-Luc Decout, Dahai Luo, Mookkan Prabakaran, Gang Chen, Elżbieta Kierzek, „A Short Chemically Modified dsRNA-Binding PNA (dbPNA) Inhibits Influenza Viral Replication by Targeting Viral RNA Panhandle Structure”, Bioconjugate Chemistry, 30, 931-943, 2019. DOI: 10.1021/acs.bioconjchem.9b00039
Jolanta Lisowiec-Wąchnicka, Brent M. Znosko, Anna Pasternak, „Contribution of 3′T and 3′TT overhangs to the thermodynamic stability of model siRNA duplexes”, Biophysical Chemistry, 246, 35-39, 2019. DOI: 10.1016/j.bpc.2018.12.006
Philip Brennecke, Dace Rasina, Oscar Aubi, Katja Herzog, Johannes Landskron, Bastien Cautain, Francisca Vicente, Jordi Quintana, Jordi Mestres, Bahne Stechmann, Bernhard Ellinger, Jose Brea, Jacek L. Kolanowski, Radosław Pilarski, Mar Orzaez, Antonio Pineda-Lucena, Luca Laraia, Faranak Nami, Piotr Zielenkiewicz, Kamil Paruch, Espen Hansen, Jens P. von Kries, Martin Neuenschwander, Edgar Specker, Petr Bartunek, Sarka Simova, Zbigniew Leśnikowski, Stefan Krauss, Lari Lehtiö, Ursula Bilitewski, Mark Brönstrup, Kjetil Taskén, Aigars Jirgensons, Heiko Lickert, Mads H. Clausen, Jeanette H. Andersen, Maria J. Vicent, Olga Genilloud, Aurora Martinez, Marc Nazaré, Wolfgang Fecke, Philip Gribbon, „EU-OPENSCREEN: A Novel Collaborative Approach to Facilitate Chemical Biology”, Slas Discovery, 24, 398-413, 2019. DOI: 10.1177/2472555218816276
Katarzyna Eichstaedt, Kamil Szpotkowski, Marcin Grajda, Mirosław Gilski, Stanisław Wosicki, Mariusz Jaskólski, Agnieszka Szumna, „Self-Assembly and Ordering of Peptide-Based Cavitands in Water and DMSO: The Power of Hydrophobic Effects Combined with Neutral Hydrogen Bonds”, Chemistry - A European Journal, 25, 3091-3097, 2019. DOI: 10.1002/chem.201805353
Marta Sikora, Łukasz Marczak, Joanna Perła-Kajan, Hieronim Jakubowski, „Sex affects N-homocysteinylation at lysine residue 212 of albumin in mice”, Scientific Reports, 9, art. nr 2669, 2019. DOI: 10.1038/s41598-019-38784-4
Szymon Wąsik, Natalia Szostak, Mateusz Kudła, Michał Wachowiak, Krzysztof Krawiec, Jacek Błażewicz, „Detecting life signatures with RNA sequence similarity measures”, Journal of Theoretical Biology, 463, 110-120, 2019. DOI: 10.1016/j.jtbi.2018.12.018
Jolanta Lisowiec-Wąchnicka, Natalia Bartyś, Anna Pasternak, „A systematic study on the influence of thermodynamic asymmetry of 5′-ends of siRNA duplexes in relation to their silencing potency”, Scientific Reports, 9, art. nr 2477, 2019. DOI: 10.1038/s41598-018-36620-9
Paulina Jackowiak, Angelika Lis, Magdalena Łuczak, Ireneusz Stolarek, Marek Figlerowicz,„Functional characterization of RNA fragments using high-throughput interactome screening”, Journal of Proteomics, 193, 173-183, 2019. DOI: 10.1016/j.jprot.2018.10.007
Magdalena Kroc, Grzegorz Koczyk, Katarzyna A. Kamel, Katarzyna Czepiel, Olga Fedorowicz-Strońska, Paweł Krajewski, Joanna Kosińska, Jan Podkowiński, Paulina Wilczura, Wojciech Święcicki, „Transcriptome-derived investigation of biosynthesis of quinolizidine alkaloids in narrow-leafed lupin (Lupinus angustifolius L.) highlights candidate genes linked to iucundus locus”, Scientific Reports, 9, art. nr 2231, 2019. DOI: 10.1038/s41598-018-37701-5
Reena Saini, Mariusz Jaskólski, Seth J. Davis, „Circadian oscillator proteins across the kingdoms of life: structural aspects”, BMC Biology, 17, art. nr 13, 2019. DOI: 10.1186/s12915-018-0623-3
Joanna Romanowska, Krystian Kołodziej, Michał Sobkowski, Marta Rachwalak, Tomasz Jakubowski, Justyna Gołębiewska, Adam Kraszewski, Jerzy Boryski, Aleksandra Dąbrowska, Jacek Stawiński, „Aryl H-phosphonates. 19. New anti-HIV pronucleotide phosphoramidate diesters containing amino- and hydroxypyridine auxiliaries”, European Journal of Medicinal Chemistry, 164, 47-58, 2019. DOI: 10.1016/j.ejmech.2018.12.038
Mateusz Waliczek, Remigiusz Bąchor, Monika Kijewska, Dorota Gąszczyk, KarolinaPanek-Laszczyńska, Andrzej Konieczny, Krystyna Dąbrowska, Wojciech Witkiewicz, Karolina, Marek-Bukowiec, Joanna Tracz, Magdalena Łuczak, Zbigniew Szewczuk, Piotr Stefanowicz, „Isobaric duplex based on a combination of 16O/18O enzymatic exchange and labeling with pyrylium salts”, Analytica Chimica Acta, 1048, 96-104, 2019. DOI: 10.1016/j.aca.2018.10.012
Dorota Formanowicz, Jacek B. Krawczyk, Bartłomiej Perek, Piotr Formanowicz, „A Control-Theoretic Model of Atherosclerosis”, International Journal of Molecular Sciences, 20, art. nr 785, 2019. DOI: 10.3390/ijms20030785
Daniel Rüdiger, Sascha Young Kupke, Tanja Laske, Paweł Zmora, Udo Reichl, „Multiscale modeling of influenza A virus replication in cell cultures predicts infection dynamics for highly different infection conditions”, PLoS Computational Biology, 15, art. nr e1006819, 2019. DOI: 10.1371/journal.pcbi.1006819
Indrajit Deb, Joanna Sarzyńska, Lennart Nilsson, Ansuman Lahiri, ”Structural Stability of the Anticodon Stem Loop Domains of the Unmodified Yeast and Escherichia coli tRNAPhe: Differing Views from Different Force Fields”, ACS Omega, 4, 3029-3044, 2019. DOI: 10.1021/acsomega.8b02383
Marcin Kowiel, Dariusz Brzeziński, Przemysław J. Porębski, Ivan G Shabalin, Mariusz Jaskólski, Władek Minor, „Automatic recognition of ligands in electron density by machine learning”, Bioinformatics, 35, 452-461, 2019. DOI: 10.1093/bioinformatics/bty626
Anna M. Schreiber, Julia O. Misiorek, Jill S. Napierała, Marek Napierała, „Progress in understanding Friedreich’s ataxia using human induced pluripotent stem cells”, Expert Opinion on Orphan Drugs, 7, 81-90, 2019. DOI: 10.1080/21678707.2019.1562334
Jacqueline M. Ward, Colleen A. Stoyas, Paweł M. Świtoński, Farid Ichou, Weiwei Fan, Brett Collins, Christopher E. Wall, Isaac Adanyeguh, Chenchen Niu, Bryce L. Sopher, Chizuru Kinoshita, Richard S Morrison, Alexandra Durr, Alysson R. Muotri, Ronald M. Evans, Fanny Mochel, Albert R. La Spada, „Metabolic and Organelle Morphology Defects in Mice and Human Patients Define Spinocerebellar Ataxia Type 7 as a Mitochondrial Disease”, Cell Reports, 26, 1189-1202, 2019. DOI: 10.1016/j.celrep.2019.01.028
Karolina Świtońska, Wojciech J. Szlachcic, Luiza Handschuh, Paweł Wojciechowski, Łukasz Marczak, Michał Stelmaszczuk, Marek Figlerowicz, Maciej Figiel, „Identification of Altered Developmental Pathways in Human Juvenile HD iPSC With 71Q and 109Q Using Transcriptome Profiling”, Frontiers in Cellular Neuroscience, 12, art. nr 528, 2019. DOI: 10.3389/fncel.2018.00528
Anna Piasecka, Piotr Kachlicki, Maciej Stobiecki, „Analytical Methods for Detection of Plant Metabolomes Changes in Response to Biotic and Abiotic Stresses”, International Journal of Molecular Sciences, 20, art. nr 379, 2019. DOI: 10.3390/ijms20020379
Joanna Szpotkowska, Agata Świątkowska, Jerzy Ciesiołka, „Length and secondary structure of the 5′ non-coding regions of mouse p53 mRNA transcripts - mouse as a model organism for p53 gene expression studies”, RNA Biology, 16, 25-41, 2019. DOI: 10.1080/15476286.2018.1556084
Markus Dettenhofer , Miroslav Ondrejovič, Viktória Vásáry, Pawel Kaszycki, Tomasz Twardowski, Stanislav Stuchlík, Ján Turňa, Munis Dundar, Kevan M. A. Gartland, Stanislav Miertuš, „Current state and prospects of biotechnology in Central and Eastern European countries. Part I: Visegrad countries (CZ, H, PL, SK)”, Critical Reviews in Biotechnology, 39, 114-136, 2019.
Stefan Jurga, Jan Barciszewski, „The DNA, RNA, and Histone Methylomes Preface”, The DNA, RNA, and Histone Methylomes, V-VII, 2019. DOI: 10.1007/978-3-030-14792-1
Anna J. Jasińska, „Biological Resources for Genomic Investigation in the Vervet Monkey (Chlorocebus)” [w:] Savanna Monkeys: The Genus Chlorocebus, Trudy R. Turner, Christopher A. Schmitt, Jennifer Danzy Cramer (red.), Cambridge University Press 2019, pp. 16-27. DOI: 10.1017/9781139019941.002
Maciej Antczak, Marcin Zabłocki, Tomasz Żok, Agnieszka Rybarczyk, Jacek Błażewicz, Marta Szachniuk, „RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs”, Bioinformatics, 35, 152-155, 2019. DOI: 10.1093/bioinformatics/bty609
Szymon Wąsik, Marcin Jaroszewski, Mateusz Nowaczyk, Natalia Szostak, Tomasz Prejzendanc, Jacek Błażewicz, „VirDB: Crowdsourced Database for Evaluation of Dynamical Viral Infection Models”, Current Bioinformatics, 14, 740-748, 2019. DOI: 10.2174/1574893614666190308155904
Tamara Aleksandrzak-Piekarczyk, Weronika Puzia, Joanna Żylińska, Jarosław Cieśla, Krzysztof A. Gulewicz, Jacek K Bardowski, Roman K. Górecki, „Potential of Lactobacillus plantarum IBB3036 and Lactobacillus salivarius IBB3154 to persistence in chicken after in ovo delivery”, MicrobiologyOpen, 8, art. nr e620, 2019. DOI: 10.1002/mbo3.620
Agnieszka Paradowska-Gorycka, Anna Wajda, Ireneusz Stolarek, Anna Felis-Giemza, Marcela Walczyk, Jolanta Nałęcz-Janik, Marzena Olesińska, „Is the T-G-CT-G SNRNP70 haplotype another proof that mixed connective tissue disease is distinct from systemic lupus erythematosus and systemic sclerosis? A novel gene variant in SNRNP70 gene”, Clinical and Experimental Rheumatology, 37, S32-S40, 2019. https://pubmed.ncbi.nlm.nih.gov/31573470/
Bogna Gryszczyńska, Magdalena Budzyń, Dorota Formanowicz, Piotr Formanowicz, Zbigniew Krasiński, Natalia Majewska, Maria Iskra, Magdalena P Kasprzak, „Advanced Oxidation Protein Products and Carbonylated Proteins Levels in Endovascular and Open Repair of an Abdominal Aortic Aneurysm: The Effect of Pre-, Intra-, and Postoperative Treatment”, Biomed Research International, 2019, art. nr 7976043, 2019. DOI: 10.1155/2019/7976043
Maurycy Szlenkier, Jerzy Boryski, „Application of Sugar-Base Anhydro Bridge for Modification of Nucleosides in the 2’- and/or 3’-Positions – Revisited”, Current Organic Chemistry, 23, 409-438, 2019. DOI: 10.2174/1385272823666190306155919
Marcin Sajek, Damian Mikołaj Janecki, Maciej Jerzy Śmiałek, Barbara Ginter-Matuszewska, Anna Spik, Sławomir Oczkowski, Erkut Ilaslan, Kamila Kusz-Zamelczyk, Maciej Kotecki, Jacek Błażewicz, Jadwiga Jaruzelska, „PUM1 and PUM2 exhibit different modes of regulation for SIAH1 that involve cooperativity with NANOS paralogues”, Cellular and Molecular Life Sciences, 76, 147-161, 2019. DOI: 10.1007/s00018-018-2926-5
Medhat Mahmoud, Marek Żywicki, Tomasz Twardowski, Wojciech M. Karłowski „Efficiency of PacBio long read correction by 2nd generation Illumina sequencing”, Genomics, 111, 43-49, 2019. DOI: 10.1016/j.ygeno.2017.12.011
Witold Andrałojć, Magdalena Małgowska, Joanna Sarzyńska, Karol Pasternak, Kamil Szpotkowski, Ryszard Kierzek, Zofia Gdaniec, „Unraveling the structural basis for the exceptional stability of RNA G-quadruplexes capped by a uridine tetrad at the 3′ terminus”, RNA, 25, 121-134, 2019. DOI: 10.1261/rna.068163.118
Wojciech Szczolko, Tomasz Koczorowski, Barbara Wichera, Łukasz Sobotta, Maria Gdaniec, Anna Teubert, Jadwiga Mielcarek, Józef Korecki, Kvetoslava Burda, Ewa Tykarska, Tomasz Gośliński, „X-ray and NMR structural studies of the series of porphyrazines with peripheral pyrrolyl groups”, Inorganica Chimica Acta, 484, 368-374, 2019. DOI: 10.1016/j.ica.2018.09.065

2018

Zbigniew Warkocki, Vladyslava Liudkovska, Olga Gewartowska, Seweryn Mroczek, Andrzej Dziembowski, „Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism”, Philosophical Transactions of the Royal Scoiety B – Biological Sciences, 373, art. nr 20180162, 2018. DOI: 10.1098/rstb.2018.0162
Jinxing Li, Masayuki Nakamori, Jun Matsumoto, Asako Murata, Chikara Dohno, Agnieszka Kiliszek, Katarzyna Taylor, Krzysztof Sobczak, Kazuhiko Nakatani, „A Dimeric 2,9-Diamino-1,10-phenanthroline Derivative Improves Alternative Splicing in Myotonic Dystrophy Type 1 Cell and Mouse Models”, Chemistry- A European Journal, 24, 18115-18122, 2018. DOI: 10.1002/chem.201804368
Agata Tyczewska, Ewa Woźniak, Joanna Gracz, Jakub Kuczyński, Tomasz Twardowski, „Towards Food Security: Current State and Future Prospects of Agrobiotechnology”, Trends in Biotechnology, 36, 1219-1229, 2018. DOI: 10.1016/j.tibtech.2018.07.008
Anna Parus, Grzegorz Framski, „Impact of O-alkyl-pyridineamidoximes on the soil environment”, Science of the Total Environment, 643, 1278-1284, 2018. DOI: 10.1016/j.scitotenv.2018.06.266
Martyna O. Urbanek-Trzeciak, Edyta Jaworska, Włodzimierz J. Krzyżosiak, „miRNAmotif—A Tool for the Prediction of Pre-miRNA–Protein Interactions”, International Journal of Molecular Sciences, 19, art. nr 4075, 2018. DOI: 10.3390/ijms19124075
Magda Drewniak, Ewelina Węglarz-Tomczak, Katarzyna Ożga, Ewa Rudzińska-Szostak, Katarzyna Macegoniuk, Jakub M. Tomczak, Magdalena Bejger, Wojciech Rypniewski, Łukasz Berlicki, „Helix-loop-helix peptide foldamers and their use in the construction of hydrolase mimetics”, Bioorganic Chemistry, 81, 356-361, 2018. DOI: 10.1016/j.bioorg.2018.07.012
Kamil Kobyłecki, Karolina Drążkowska, Tomasz M. Kuliński, Andrzej Dziembowski, Rafał Tomecki, „Elimination of 01/A′–A0 pre-rRNA processing by-product in human cells involves cooperative action of two nuclear exosome-associated nucleases: RRP6 and DIS3”, RNA, 24, 1677-1692, 2018. DOI: 10.1261/rna.066589.118
Jacek Błażewicz, Benjamin Moseley, Erwin Pesch, Denis Trystram, Guochuan Zhang, „New challenges in scheduling theory”, Journal of Scheduling, 21, 581-582, 2018. DOI: 10.1007/s10951-018-0571-3
Lucia Gigli, Witold Andrałojć, Arina Dalaloyan, Giacomo Parigi, Enrico Ravera, Daniella Goldfar, Claudio Luchinat, „Assessing protein conformational landscapes: integration of DEER data in Maximum Occurrence analysis”, Physical Chemistry Chemical Physics, 20, 27429-27438, 2018. DOI: 10.1039/c8cp06195e
Paweł Czerniawski, Paweł Bednarek, „Glutathione S-Transferases in the Biosynthesis of Sulfur-Containing Secondary Metabolites in Brassicaceae Plants”, Frontiers in Plant Science, 9, art. nr 1639, 2018. DOI: 10.3389/fpls.2018.01639
Agnieszka Wesołowska, Monika Kozak Ljunggren, Luiza Jedlina, Katarzyna Basałaj, Andrzej Legocki, Halina Wedrychowicz, Małgorzata Kesik-Brodacka, „A Preliminary Study of a Lettuce-Based Edible Vaccine Expressing the Cysteine Proteinase of Fasciola hepatica for Fasciolosis Control in Livestock”, Frontiers in Immunology, 9, art. nr 2592, 2018. DOI: 10.3389/fimmu.2018.02592
Alicja E. Grzegorzewska, Leszek Niepolski, Monika K. Świderska, Adrianna Mostowska, Ireneusz Stolarek, Wojciech Warchoł, Marek Figlerowicz, Paweł P. Jagodziński, „ENHO, RXRA, and LXRA polymorphisms and dyslipidaemia, related comorbidities and survival in haemodialysis patients”, BMC Medical Genetics, 19, art. nr 194, 2018. DOI: 10.1186/s12881-018-0708-4
Tomasz M. Witkos, Włodzimierz J. Krzyżosiak, Agnieszka Fiszer, Edyta Kościańska, „A potential role of extended simple sequence repeats in competing endogenous RNA crosstalk”, RNA Biology, 15, 1399-1409, 2018. DOI: 10.1080/15476286.2018.1536593
Anna Szczepaniak, Michał Książkiewicz, Jan Podkowiński, Katarzyna B. Czyż, Marek Figlerowicz, Barbara Naganowska, „Legume Cytosolic and Plastid Acetyl-Coenzyme—A Carboxylase Genes Differ by Evolutionary Patterns and Selection Pressure Schemes Acting before and after Whole-Genome Duplications”, Genes, 9, art. nr 563, 2018. DOI: 10.3390/genes9110563
Magdalena Koczkowska, Natalia Krawczyńska, Maciej Stukan, Alina Kuźniacka, Izabela Brozek, Marcin Śniadecki, Jarosław Dębniak, Dariusz Wydra, Wojciech Biernat, Piotr Kozłowski, Janusz Limon, Bartosz Wasag, Magdalena Ratajska, „Spectrum and Prevalence of Pathogenic Variants in Ovarian Cancer Susceptibility Genes in a Group of 333 Patients”, Cancers, 10, art. nr 442, 2018. DOI: 10.3390/cancers10110442
Agnieszka Gryszczyńska, Mariola Dreger, Anna Piasecka, Piotr Kachlicki, Natalia Witaszak, Aneta Sawikowska, Marcin Ożarowski, Bogna Opala, Zdzisław Łowicki, Aurelia Pietrowiak, Magdalena Miklaś, Łukasz P. Mikołajczak, Karolina Wielgus, Qualitative and quantitative analyses of bioactive compounds from ex vitro Chamaenerion angustifolium (L.) (Epilobium augustifolium) herb in different harvest times”, Industrial Crops and Products, 123, 208-220, 2018. DOI: 10.1016/j.indcrop.2018.06.010
Wanda Biała, Michał Jasiński, „The Phenylpropanoid Case – It Is Transport That Matters”, Frontiers in Plant Science, 9, art. nr 1610, 2018. DOI: 10.3389/fpls.2018.01610
Katarína Kimáková, Andrea Kimáková, Jakub Idkowiak, Maciej Stobiecki, Paweł Rodziewicz, Łukasz Marczak, Eva Čellárová, „Phenotyping the genus Hypericum by secondary metabolite profiling: emodin vs. skyrin, two possible key intermediates in hypericin biosynthesis”, Analytical and Bioanalytical Chemistry, 410, 7689-7699, 2018. DOI: 10.1007/s00216-018-1384-0
Agnieszka Troszok, Ludmiła Kolek, Joanna Szczygieł, Joanna Wawrzeczko, Ewa Borzym, Michał Reichert, Teresa Kamińska, Tomasz Ostrowski, Patrycja Jurecka, Mikołaj Adamek, Krzysztof Rakus, Ilgiz Irnazarow, „Acyclovir inhibits Cyprinid herpesvirus 3 multiplication in vitro”, Journal of Fish Diseases, 41, 1709-1718, 2018. DOI: 10.1111/jfd.12880
Dorota Formanowicz, Kaja Gutowska, Piotr Formanowicz, „Theoretical Studies on the Engagement of Interleukin 18 in the Immuno-Inflammatory Processes Underlying Atherosclerosis”, International Journal of Molecular Sciences, 19, art. nr 3476, 2018. DOI: 10.3390/ijms19113476
Agata Abramowicz, Łukasz Marczak, Anna Wojakowska, Szczepan Zapotoczny, Theresa L. Whiteside, Piotr Widlak, Monika Pietrowska, „Harmonization of exosome isolation from culture supernatants for optimized proteomics analysis”, Plos One, 13, art. nr e0205496, 2018. DOI: 10.1371/journal.pone.0205496
Magdalena Rakoczy, Iwona Femiak, Magdalena Alejska, Marek Figlerowicz, Jan Podkowiński, „2Sorghum CCoAOMT and CCoAOMT-like gene evolution, structure, expression and the role of conserved amino acids in protein activity”, Molecular Genetics and Genomics, 293, 1077-1089, 2018. DOI: 10.1007/s00438-018-1441-6
Magdalena Dąbrowska, Karol Czubak, Wojciech Juźwa, Włodzimierz J. Krzyżosiak, Marta Olejniczak, Piotr Kozłowski, „qEva-CRISPR: a method for quantitative evaluation of CRISPR/Cas-mediated genome editing in target and off-target sites”, Nucleic Acids Research, 46, art. nr e101, 2018. DOI: 10.1093/nar/gky505
Jolanta Brzezińska, Jacek Kujawski, Agnieszka Witkowska, Kornelia Czaja, Marek K. Bernard, Marcin K. Chmielewski, „Experimental and computational studies on a protonated 2-pyridinyl moiety and its switchable effect for the design of thermolytic devices”, Plos One, 13, art. nr e0203604, 2018. DOI: 10.1371/journal.pone.0203604
Patrycja Sosińska-Zawierucha, Piotr Zawierucha, Andrzej Bręborowicz, Jan Barciszewski, „Prediction of secondary and tertiary structures of human BC200 RNA (BCYRN1) based on experimental and bioinformatic cross-validation”, Biochemical Journal, 475, 2727-2748, 2018. DOI: 10.1042/BCJ20180239
Zbigniew Warkocki, Paweł S. Krawczyk, Dorota Adamska, Krystian Bijata, Jose L. Garcia-Perez, Andrzej Dziembowski, „Uridylation by TUT4/7 Restricts Retrotransposition of Human LINE-1s”, Cell, 174, 1537-1548, 2018. DOI: 10.1016/j.cell.2018.07.022
Marta Gawin, Anna Wojakowska, Monika Pietrowska, Łukasz Marczak, Mykola Chekan, Karol Jelonek, Dariusz Lange, Roman Jaksik, Aleksandra Gruca, Piotr Widłak, „Proteome profiles of different types of thyroid cancers”, Molecular and Cellular Endocrinology, 472, 68-79, 2018. DOI: 10.1016/j.mce.2017.11.020
Marcin Radom, Piotr Formanowicz, „An Algorithm for Sequencing by Hybridization Based on an Alternating DNA Chip”, Interdisciplinary Sciences: Computational Life Sciences, 10, 605–615, 2018. DOI: 10.1007/s12539-017-0220-0
Szymon Wasik, „Modeling Biological Systems Using Crowdsourcing”, Foundations of Computing and Decision Sciences, 43, 219-243 , 2018. DOI: 10.1515/fcds-2018-0012
Joanna E. Raczyńska, Ivan G. Shabalin, Władek Minor, Alexander Włodawer, Mariusz Jaskólski, „A close look onto structural models and primary ligands of metallo-β-lactamases”, Drug Resistance Updates, 40, 1-12, 2018. DOI: 10.1016/j.drup.2018.08.001
Jakub Zdarta, Katarzyna Antecka, Artur Jędrzaka, Karol Synoradzki, Magdalena Łuczak, Teofil Jesionowski, „Biopolymers conjugated with magnetite as support materials for trypsin immobilization and protein digestion”, Colloids and Surfaces B: Biointerfaces, 169, 118-125, 2018. DOI: 10.1016/j.colsurfb.2018.05.018
Aleksandra Obrępalska-Stęplowska, Agnieszka Żmieńko, Barbara Wrzesińska, Michał Góralski, Marek Figlerowicz, Joanna Zyprych-Walczak, Idzi Siatkowski, Henryk Pospieszny, „The Defense Response of Nicotiana benthamiana to Peanut Stunt Virus Infection in the Presence of Symptom Exacerbating Satellite RNA”, Viruses, 10, art. nr 449, 2018. DOI: 10.3390/v10090449
Ewa Czeczuga-Semeniuk, Marzenna Galar, Katarzyna Jarząbek, Piotr Kozłowski, Nela A. Sarosiek, Sławomir Wołczyński, „The preliminary association study of ADIPOQ, RBP4, and BCMO1 variants with polycystic ovary syndrome and with biochemical characteristics in a cohort of Polish women”, Advances in Medical Sciences, 63, 242-248, 2018. DOI: 10.1016/j.advms.2018.01.002
Edmund Kozieł, Katarzyna Otulak-Kozieł, Józef J. Bujarski, „Ultrastructural Analysis of Prune Dwarf Virus Intercellular Transport and Pathogenesis”, International Journal of Molecular Sciences, 19, art. nr 2570, 2018. DOI: 10.3390/ijms19092570
Marta Szabat, Elżbieta Kierzek, Ryszard Kierzek, „Modified RNA triplexes: Thermodynamics, structure and biological potential”, Scientific Reports, 8, Art. nr 13023, 2018. DOI: 10.1038/s41598-018-31387-5
Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk, „RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures”, BMC Bioinformatics, 19, art. nr 304, 2018. DOI: 10.1186/s12859-018-2317-9
Luiza Handschuh, Paweł Wojciechowski, Maciej Kaźmierczak, Małgorzata Marcinkowska-Swojak, Magdalena Łuczak, Krzysztof Lewandowski, Mieczysław Komarnicki, Jacek Błażewicz, Marek Figlerowicz, Piotr Kozłowski, „NPM1 alternative transcripts are upregulated in acute myeloid and lymphoblastic leukemia and their expression level affects patient outcome”, Journal of Translational Medicine, 16, Art. nr 232, 2018. DOI: 10.1186/s12967-018-1608-2
Aleksandra Świercz, Wojciech Frohmberg, Michał Kierzynka, Paweł Wojciechowski, Piotr Żurkowski, Jan Badura, Artur Laskowski, Marta Kasprzak, Jacek Błażewicz, „GRASShopPER—An algorithm for de novo assembly based on GPU alignments”, Plos One, 13, art. nr e0202355, 2018. DOI: 10.1371/journal.pone.0202355
Mariola Dutkiewicz, Jerzy Ciesiołka, „Form confers function: Case of the 3 ' X region of the hepatitis C virus genome”, World Journal of Gastroenterology, 24, 3374-3383, 2018. DOI: 10.3748/wjg.v24.i30.3374
H. Gut, P. Kumari, F. Aeschimann, D. Gaidatzis, J. J. Keusch, A. Neagu, K. Pachulska-Wieczorek, H. Grosshans and R. Ciosk, „RNA specificity of NHL domains revisited: LIN-41/TRIM71 binds a defined RNA stem-loop element via shape and electrostatic complementarity”, Acta Crystallographica Section A - Foundations and Advances, 74, E31-E31, 2018. DOI: 10.1107/S2053273318094731
J. Śmietańska, J. Śliwiak, M. Jaskólski, M. Gilski, Z. Dauter, R. Strzałka and J. Wolny, „Protein crystal with ninefold structure modulation and 36 protein molecules in the asymmetric unit”, Acta Crystallographica Section A - Foundations and Advances, 74, E95-E95, 2018. DOI: 10.1107/S2053273318093804
Maciej Ciemny, Mateusz Kurciński, Karol Kamel, Andrzej Koliński, Nawsad Alam, Ora Schueler-Furman, SebastianKmiecik, „Protein–peptide docking: opportunities and challenges”, Drug Discovery Today, 23, 1530-1537, 2018. DOI: 10.1016/j.drudis.2018.05.006
Katarzyna Otulak-Kozieł, Edmund Kozieł, Józef J. Bujarski, „Spatiotemporal Changes in Xylan-1/Xyloglucan and Xyloglucan Xyloglucosyl Transferase (XTH-Xet5) as a Step-In of Ultrastructural Cell Wall Remodelling in Potato–Potato Virus Y (PVYNTN) Hypersensitive and Susceptible Reaction”, International Journal of Molecular Sciences, 19, art. nr 2287, 2018. DOI: 10.3390/ijms19082287
Jolanta Solecka, Aleksandra Rajnisz-Mateusiak, Adam Guspiel, Katarzyna Jakubiec-Krzesniak, Joanna Ziemska, Robert Kawęcki, Dorota Kaczorek, Dorota Gudanis, Joanna Jarosz, Joanna Wietrzyk, „Cyclo(Pro-DOPA), a third identified bioactive metabolite produced by Streptomyces sp. 8812”, Journal of Antibiotics, 71, 757-761, 2018. DOI: 10.1038/s41429-018-0059-6
Justyna Czyrko, Joanna Śliwiak, Barbara Imiołczyk, Zofia Gdaniec, Mariusz Jaskólski, Krzysztof Brzeziński, „Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-l-homocysteine hydrolase from Pseudomonas aeruginosa”, Scientific Reports, 8 art. nr 11334, 2018. DOI: 10.1038/s41598-018-29535-y
Aleksander Strugała, Paulina Bierwagen, Jakub Dalibor Rybka, Michał Giersig, Marek Figlerowicz, Anna Urabnowicz, „BMV Propagation, Extraction and Purification Using Chromatographic Methods”, Bio-Protocol, 8, art. nr e2935, 2018. DOI: 10.21769/BioProtoc.2935
N. Shresthaa, P. H. Webera, S. V. Burkea, W. P. Wysocki, M. R. Duvall, J.J.Bujarski, „Next generation sequencing reveals packaging of host RNAs by brome mosaic virus”, Virus Research, 252, 82-90, 2018. DOI: 10.1016/j.virusres.2018.05.011
Tomasz Zok, Maciej Antczak, Michał Żurkowski, Mariusz Popenda, Jacek Błażewicz, Ryszard W. Adamiak, Marta Szachniuk, „RNApdbee 2.0: multifunctional tool for RNA structure annotation”, Nucleic Acids Research, 46, W30–W35, 2018. DOI: 10.1093/nar/gky314
Silvia Gutnik, Yann Thomas, Yanwu Guo, Janosch Stoecklin, Anca Neagu, Lionel Pintard, Jorge Merlet, Rafał Ciosk, „PRP-19, a conserved pre-mRNA processing factor and E3 ubiquitin ligase, inhibits the nuclear accumulation of GLP-1/Notch intracellular domain”, Biology Open, 7, art. nr bio034066, 2018. DOI: 10.1242/bio.034066
Angelika Świtalska, Anna Dembska, Agnieszka Fedoruk-Wyszomirska, Bernard Juskowiak, „Cholesterol-Bearing Fluorescent G-Quadruplex Potassium Probes for Anchoring at the Langmuir Monolayer and Cell Membrane”, Sensors, 18, art. nr 2201, 2018. DOI: 10.3390/s18072201
Anna M. Mleczko, Piotr Celichowski, Kamilla Bąkowska-Żywicka, „Transfer RNA-derived fragments target and regulate ribosome-associated aminoacyl-transfer RNA synthetases”, Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 1861, 647-656, 2018. DOI: 10.1016/j.bbagrm.2018.06.001
Jędrzej M. Jaśkowski, Julita Kmiecik, Aleksandra Kierbić, Magdalena Herudzińska, Magdalena Woźna-Wysocka, „Automatic systems for heat detection in cows as a tool for improving herd management”, Medycyna Weterynaryjna – Veterinary Medicine – Science & Practice, 74, 434-440, 2018. DOI: 10.21521/mw.5989
Adam Kozak, Dorota Formanowicz, Piotr Formanowicz, „Structural analysis of a Petri net model of oxidative stress in atherosclerosis”, IET Systems Biology, 12, 108-117, 2018. DOI: 10.1049/iet-syb.2017.0015
Justyna Czyrko, Mariusz Jaskólski, Krzysztof Brzeziński, „Crystal Structure of S-adenosyl-L-homocysteine Hydrolase from Cytophaga hutchinsonii, a Case of Combination of Crystallographic and Non-crystallographic Symmetry”, Croatica Chemica Acta, 91, 153-162, 2018. DOI: 10.5562/cca3345
Joanna Miśkiewicz, Marta Szachniuk, „Discovering Structural Motifs in miRNA Precursors from the Viridiplantae Kingdom”, Molecules, 23, art. nr 1367, 2018. DOI: 10.3390/molecules23061367
Łukasz Sobotta, Jolanta Długaszewska, Piotr Kasprzycki, Sebastian Lijewski, Anna Teubert, Jadwiga Mielcarek, Maria Gdaniec, Tomasz Gośliński, Piotr Fita, Ewa Tykarska, „In vitro photodynamic activity of lipid vesicles with zinc phthalocyanine derivative against Enterococcus faecalis”, Journal of Photochemistry and Photobiology B: Biology, 183, 111-118, 2018. DOI: 10.1016/j.jphotobiol.2018.04.025
Krzysztof Kuciński, Magdalena Jankowska-Wajda, Tomasz Ratajczak, Sandra Bałabańska-Trybuś, Anna Schulmann, Hieronim Maciejewski, Marcin K. Chmielewski, Grzegorz Hreczycho, „Silica Surface Modification and Its Application in Permanent Link with Nucleic Acids”, ACS Omega, 3, 5931-5937, 2018. DOI: 10.1021/acsomega.8b00547
Weronika Kotkowiak, Tomasz Czapik, Anna Pasternak, „Novel isoguanine derivative of unlocked nucleic acid—Investigations of thermodynamics and biological potential of modified thrombin binding aptamer”, Plos One, 13, art. nr e0197835, 2018. DOI: 10.1371/journal.pone.0197835
Justyna Gołębiewska, Marta Rachwalak, Tomasz Jakubowski, Joanna Romanowska, Jacek Stawiński, „Reaction of Boranephosphonate Diesters with Amines in the Presence of Iodine: The Case for the Intermediacy of H-Phosphonate Derivatives”, Journal of Organic Chemistry, 83, 5496-5505, 2018. DOI: 10.1021/acs.joc.8b00419
Marta López-Morató, John David Brook, Marzena Wojciechowska, „Small Molecules Which Improve Pathogenesis of Myotonic Dystrophy Type 1”, Frontiers in Neurology, 9, art. nr 349, 2018. DOI: 10.3389/fneur.2018.00349
Jonna Śliwiak, Michał Sikorski, Mariusz Jaskólski, „PR-10 proteins as potential mediators of melatonin-cytokinin cross-talk in plants: crystallographic studies of LlPR-10.2B isoform from yellow lupine”, FEBS Journal, 285, 1907-1922, 2018. DOI: 10.1111/febs.14455
Aleksandar Spasic, Scott D. Kennedy, Laura Needham, Muthiah Manoharan, Ryszard Kierzek, Douglas H. Turner, David H. Mathews, „Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformation”, RNA, 656-672, 2018. DOI: 10.1261/rna.064527.117
Daniel Mietchen, Shoshana Wodak, Szymon Wasik, Natalia Szostak, Christophe Dessimoz, „Submit a Topic Page to PLOS Computational Biology and Wikipedia”, Plos Computational Biology, 14, art. nr e1006137, 2018. DOI: 10.1371/journal.pcbi.1006137
Pooja Kumari, Florian Aeschimann, Dimos Gaidatzis, Jeremy J. Keusch, Pritha Ghosh, Anca Neagu, Katarzyna Pachulska-Wieczorek, Janusz M. Bujnicki, Heinz Gut, Helge Großhans, Rafał Ciosk, „Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition”, Nature Communications, 9, art. nr 1549, 2018. DOI: 10.1038/s41467-018-03920-7
Maciej Antczak, Mariusz Popenda, Tomasz Żok, Michał Zurkowski, Ryszard W. Adamiak, Marta Szachniuk, „New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation”, Bioinformatics, 34, 1304-1312, 2018. DOI: 10.1093/bioinformatics/btx783
Marzena Wojciechowska, Krzysztof Sobczak, Piotr Kozłowski, Saam Sedehizadeh, Agnieszka Wojtkowiak-Szlachcic, Karol Czubak, Robert Markus, Anna Lusakowska, Anna Kamińska, J. David Brook, „Quantitative Methods to Monitor RNA Biomarkers in Myotonic Dystrophy”, Scientific Reports, 8, art. nr 5885, 2018. DOI: 10.1038/s41598-018-24156-x
C. A. Schmitt, S. K. Service, A. J. Jasińska, T. D. Dyer, M. J. Jorgensen, R. M. Cantor, G. M. Weinstock, J. Blangero, J. R. Kaplan, N. B. Freimer, „Obesity and obesogenic growth are both highly heritable and modified by diet in a nonhuman primate model, the African green monkey (Chlorocebus aethiops sabaeus)”, International Journal of Obesity, 42, 765–774, 2018. DOI: 10.1038/ijo.2017.301
Szymon Wąsik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal, „A Survey on Online Judge Systems and Their Applications”, ACM Computing Surveys, 51, art. nr 3, 2018. DOI: 10.1145/3143560
Ebenezer Ajewole, Liliana Santamaria-Kisiel, Agnieszka Pajak, Mariusz Jaskólski, Frédéric Marsolais, „Structural basis of potassium activation in plant asparaginases”, FEBS Journal, 285, 1528-1539, 2018. DOI: 10.1111/febs.14428
Sara Sopeña-Torres, Lucía Jordá, Clara Sánchez-Rodríguez, Eva Miedes, Viviana Escudero, Sanjay Swami, Gemma López, Mariola Piślewska-Bednarek, Ines Lassowskat, Justin Lee, Yangnan Gu, Sabine Haigis, Danny Alexander, Sivakumar Pattathil, Antonio Muñoz-Barrios, Paweł Bednarek, Shauna Somerville, Paul Schulze-Lefert, Michael G. Hahn, Dierk Scheel, Antonio Molina, „YODA MAP3K kinase regulates plant immune responses conferring broad-spectrum disease resistance”, New Phytologist, 218, 661-680, 2018. DOI: 10.1111/nph.15007
Beata P. Plitta-Michalak, Mirosława Z. Naskręt-Barciszewska, Szymon Kotlarski, Dominik Tomaszewski, Tadeusz Tylkowski, Jan Barciszewski, Paweł Chmielarz, Marcin Michalak, „Changes in genomic 5-methylcytosine level mirror the response of orthodox (Acer platanoides L.) and recalcitrant (Acer pseudoplatanus L.) seeds to severe desiccation”, Tree Physiology, 38, 617-629, 2018. DOI: 10.1093/treephys/tpx134
Małgorzata Jakubowicz, Witold Nowak, Łukasz Gałgański, Danuta Babula-Skowrońska, „Expression profiling of genes encoding ABA route components in response to dehydration or various light conditions in poplar buds and leaves”, Journal of Plant Physiology, 223, 84-95, 2018. DOI: 10.1016/j.jplph.2018.01.011
Jing Zhao, Mengjun Xue, Dorota Gudanis, Hanna Gracz, Gerhard H. Findenegg, Zofia Gdaniec, Stefan Franzen, „Dynamics of dehaloperoxidase-hemoglobin A derived from NMR relaxation spectroscopy and molecular dynamics simulation”, Journal of Inorganic Biochemistry, 181, 65-73, 2018. DOI: 10.1016/j.jinorgbio.2018.01.006
Kalina Wiatr, Wojciech J. Szlachcic, Marta Trzeciak, Marek Figlerowicz, Maciej Figiel, „Huntington Disease as a Neurodevelopmental Disorder and Early Signs of the Disease in Stem Cells”, Molecular Neurobiology, 55, 3351-3371, 2018. DOI: 10.1007/s12035-017-0477-7
Lyn L. Kailing, Daniela Bertinetti, Caroline E. Paul, Tomasz Manszewski, Mariusz Jaskólski, Friedrich W. Herberg, Ioannis V. Pavlidis, „S-Adenosyl-L-Homocysteine Hydrolase Inhibition by a Synthetic Nicotinamide Cofactor Biomimetic”, Frontiers in Microbiology, 9, Art. nr 505, 2018. DOI: 10.3389/fmicb.2018.00505
Weronika Kotkowiak, Jolanta Lisowiec-Wąchnicka, Jakub Grynda, Ryszard Kierzek, Jesper Wengel, Anna Pasternak, „Thermodynamic, Anticoagulant, and Antiproliferative Properties of Thrombin Binding Aptamer Containing Novel UNA Derivative”, Molecular Therapy – Nucleic Acids, 10, 304-316, 2018. DOI: 10.1016/j.omtn.2017.12.013
Marcin Ożarowski, Anna Piasecka, Anna Paszel-Jaworska, Douglas Siqueira de A.Chaves, Aleksandra Romaniuk, Maria Rybczyńska, Agnieszka Gryszczyńska, Aneta Sawikowska, Piotr Kachlicki, Przemysław L. Mikołajczak, Agnieszka Seremak-Mrozikiewicz, Andrzej Klejewski, BarbaraThiem, „Comparison of bioactive compounds content in leaf extracts of Passiflora incarnata, P. caerulea and P. alata and in vitro cytotoxic potential on leukemia cell lines”, Revista Brasileira de Farmacognosia, 28, 179-191, 2018. DOI: 10.1016/j.bjp.2018.01.006
Elżbieta Weryszko-Chmielewska, Idalia Kasprzyk, Małgorzata Nowak, Aneta Sulborska, Joanna Kaczmarek, Agata Szymańska, Weronika Haratym, Mirosław Gilski, Małgorzata Jędryczka, „Health hazards related to conidia of Cladosporium—biological air pollutants in Poland, central Europe”, Journal of Environmental Sciences, 65, 271-281, 2018. DOI: 10.1016/j.jes.2017.02.018
Christina Fassnacht, Cristina Tocchini, Pooja Kumari, Dimos Gaidatzis, Michael B. Stadler, Rafał Ciosk, „The CSR-1 endogenous RNAi pathway ensures accurate transcriptional reprogramming during the oocyte-to-embryo transition in Caenorhabditis elegans”, Plos Genetics, 14, art. nr e107252, 2018. DOI: 10.1371/journal.pgen.1007252
Dorota Formanowicz, Marcin Radom, Agnieszka Rybarczyk, Piotr Formanowicz, „The role of Fenton reaction in ROS-induced toxicity underlying atherosclerosis – modeled and analyzed using a Petri net-based approach”, Biosystems, 165, 71-87, 2018. DOI: 10.1016/j.biosystems.2018.01.002
Adam A. Mieloch, Monika Kręcisz, Jakub D. Rybka, Aleksander Strugała, Michał Krupiński, Anna Urbanowicz, Maciej Kozak, Bohdan Skalski, Marek Figlerowicz, Michael Giersig, „The influence of ligand charge and length on the assembly of Brome mosaic virus derived virus-like particles with magnetic core”, AIP Advances, 8, art. nr 035005, 2018. DOI: 10.1063/1.5011138
Luiza Handschuh, Maciej Kaźmierczak, Marek C. Milewski, Michał Góralski, Magdalena Łuczak, Marzena Wojtaszewska, Barbara Uszczyńska-Ratajczak, Krzysztof Lewandowski, Mieczysław Komarnicki, Marek Figlerowicz, „Gene expression profiling of acute myeloid leukemia samples from adult patients with AML-M1 and -M2 through boutique microarrays, real-time PCR and droplet digital PCR”, International Journal of Oncology, 52, 656-678, 2018. DOI: 10.3892/ijo.2017.4233
Zbigniew Dauter, Mariusz Jaskólski, „On the helical arrangements of protein molecules”, Protein Science, 27, 643-652, 2018. DOI: 10.1002/pro.3356
Magdalena Dąbrowska, Wojciech Juźwa, Włodzimierz J. Krzyżosiak, Marta Olejniczak, „Precise Excision of the CAG Tract from the Huntingtin Gene by Cas9 Nickases”, Frontiers in Neuroscience, 12, art. nr 75, 2018. DOI: 10.3389/fnins.2018.00075
Ewa Toton, Aleksandra Romaniuk, Natalia Konieczna, Johann Hofmann, Jan Barciszewski, Maria Rybczyńska, „Impact of PKCε downregulation on autophagy in glioblastoma cells”, BMC Cancer, 18, art. nr 185, 2018. DOI: 10.1186/s12885-018-4095-1
Ireneusz Stolarek, Anna Juras, Luiza Handschuh, Małgorzata Marcinkowska-Swojak, Anna Philips, Michał Zeńczak, Artur Dębski, Hanna Kóčka-Krenz, Janusz Piontek, Piotr Kozłowski, Marek Figlerowicz, „A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age”, Scientific Reports, 8, art. nr 2455, 2018. DOI: 10.1038/s41598-018-20705-6
Alexander Włodawer, Zbigniew Dauter, Przemysław J. Porębski, Władek Minor, Robyn Stanfield, Mariusz Jaskólski, Edwin Pozharski, Christian X. Weichenberger, Bernhard Rupp, „Detect, correct, retract: How to manage incorrect structural models”, Febs Journal, 285, 444-466, 2018. DOI: 10.1111/febs.14320
Marta Orlikowska, Magdalena de J. Rostro-Alanis, Anna Bujacz, Carlos Hernández-Luna, Rodrigo Rubio, Roberto Parra, Grzegorz Bujacz, „Structural studies of two thermostable laccases from the white-rot fungus Pycnoporus sanguineus”, International Journal of Biological Macromolecules, 107, 1629-1640, 2018. DOI: 10.1016/j.ijbiomac.2017.10.024
Jacek Błażewicz, Marta Kasprzak, Michał Kierzynka, Wojciech Frohmberg, Aleksandra Świercz, Paweł Wojciechowski, Piotr Żurkowski, „Graph algorithms for DNA sequencing – origins, current models and the future”, European Journal of Operational Research, 264, 799-812, 2018. DOI: 10.1016/j.ejor.2016.06.043
J. Olszak, M. Radom, P. Formanowicz, „Some aspects of modeling and analysis of complex biological systems using time Petri nets”, Bulletin of the Polish Academy of Sciences – Technical Sciences, 66, 67-78, 2018. DOI: 10.24425/119060
Jason A. Chen, Scott C. Fears, Anna J. Jasińska, Alden Huang, Noor B. Al-Sharif, Kevin E. Scheibel, Thomas D. Dyer, Anne M. Fagan, John Blangero, Roger Woods, Matthew J. Jorgensen, Jay R. Kaplan, Nelson B. Freimer, Giovanni Coppola, „Neurodegenerative disease biomarkers Aβ1–40, Aβ1–42, tau, and p-tau181 in the vervet monkey cerebrospinal fluid: Relation to normal aging, genetic influences, and cerebral amyloid angiopathy”, Brain and Behavior, 8, art. nr e00903, 2018. DOI: 10.1002/brb3.903
Aleksandra Małyska, Robert Bolla, Tomasz Twardowski, „Communicating Biotech Advances: Fiction versus Reality”, Trends in Biotechnology, 36, 121-123, 2018. DOI: 10.1016/j.tibtech.2017.10.018
Alfredo Aguilar, Roland Wohlgemuth, Tomasz Twardowski, „Preface to the special issue bioeconomy”, New Biotechnology, 40, 1-4, 2018. DOI: 10.1016/j.nbt.2017.06.008
Ewa Woźniak, Tomasz Twardowski, „The bioeconomy in Poland within the context of the European Union”, New Biotechnology, 40, 96-102, 2018. DOI: 10.1016/j.nbt.2017.06.003
Paulina Żydowicz-Machtel, Agata Świątkowska, Łukasz Popenda, Agnieszka Górska, Jerzy Ciesiołka, „Variants of the 5′-terminal region of p53 mRNA influence the ribosomal scanning and translation efficiency”, Scientific Reports, 8, art. nr 1533, 2018. DOI: 10.1038/s41598-018-20010-2
Agnieszka Szymańska-Michalak, Dariusz Wawrzyniak, Grzegorz Framski, Jacek Stawiński, Jan Barciszewski, Adam Kraszewski, „New antiglioma zwitterionic pronucleotides with an FdUMP framework”, European Journal of Medicinal Chemistry, 144, 682-691, 2018. DOI: 10.1016/j.ejmech.2017.12.070
Tomasz Stefański, Renata Mikstacka, Rafał Kurczab, Zbigniew Dutkiewicz, Małgorzata Kucińska, Marek Murias, Małgorzata Zielińska-Przyjemska, Michał Cichocki, Anna Teubert, Mariusz Kaczmarek, Adam Hogendorf, Stanisław Sobiak, „Design, synthesis, and biological evaluation of novel combretastatin A-4 thio derivatives as microtubule targeting agents”, European Journal of Medicinal Chemistry, 144, 797-816, 2018. DOI: 10.1016/j.ejmech.2017.11.050
Jacek L. Kolanowski, Fei Liu, Elizabeth J. New, „Fluorescent probes for the simultaneous detection of multiple analytes in biology”, Chemical Society Reviews, 47, 195-208, 2018. DOI: 10.1039/c7cs00528h
Olga Wawrzyniak, Żaneta Zarębska, Katarzyna Rolle, Anna Gotz-Więckowska, „Circular and long non-coding RNAs and their role in ophthalmologic diseases”, Acta Biochimica Polonica, 65, 497-508, 2018. DOI: 10.18388/abp.2018_2639
Marta Olejniczak, Anna Kotowska-Zimmer, Włodzimierz Krzyżosiak, „Stress-induced changes in miRNA biogenesis and functioning”, Cellular and Molecular Life Sciences, 75, 177-191, 2018. DOI: 10.1007/s00018-017-2591-0
Mateusz Sydowa, Mikołaj Owsianiak, Grzegorz Framski, Marta Woźniak-Karczewska, Agnieszka Piotrowska-Cyplik, Łukasz Ławniczak, Alicja Szulc, Agnieszka Zgoła-Grześkowiaka, Hermann J.Heipieper, Łukasz Chrzanowski, „Biodiversity of soil bacteria exposed to sub-lethal concentrations of phosphonium-based ionic liquids: Effects of toxicity and biodegradation”, Ecotoxicology and Environmental Safety, 147, 157-164, 2018. DOI: 10.1016/j.ecoenv.2017.08.026
Dennis Eriksson, Eugénia de Andrade, Borut Bohanec, Sevasti Chatzopolou, Roberto Defez, Nélida Leiva Eriksson, Piet van der Meer, Bernd van der Meulen, Anneli Ritala, László Sági, Joachim Schiemann, Tomasz Twardowski, Tomáš Vaněk, „Why the European Union needs a national GMO opt-in mechanism”, Nature Biotechnology, 36, 18-19, 2018. DOI: 10.1038/nbt.4051
Kamila Borowczyk, Jacek Wróblewski, Joanna Suliburska, Noriyuki Akahoshi, Isao Ishii, Hieronim Jakubowski, „Mutations in Homocysteine Metabolism Genes Increase Keratin N-Homocysteinylation and Damage in Mice”, International Journal of Genomics, 2018, art. nr 7570850, 2018. DOI: 10.1155/2018/7570850
Kamil Kucharczyk, Marek Weiss, Katarzyna Jastrzębska, Magdalena Łuczak, Arkadiusz Ptak, Maciej Kozak, Andrzej Mackiewicz, Hanna Dams-Kozłowska, „Bioengineering the spider silk sequence to modify its affinity for drugs”, International Journal of Nanomedicine, 13, 4247-4261, 2018. DOI: 10.2147/IJN.S168081
Malik S. Ahmad, Saima Rasheed, Sven Falke, Binish Khaliq, Markus Perbandt, Muhammad I Choudhary, Wojciech T. Markiewicz, Jan Barciszewski, Christian Betzel, „Crystal Structure of Mistletoe Lectin I (ML-I) from Viscum album in Complex with 4-N-Furfurylcytosine at 2.85 Å Resolution”, Medicinal Chemistry, 14, 754-763, 2018. DOI: 10.2174/1573406414666180524095946
Anna Parus, Grzegorz Framski, „Synthesis, characterization, and evaluation of toxicity of quaternary ammonium chlorides of glucose-based este”, Turkish Journal of Chemistry, 42, 1095-1104, 2018. DOI: 10.3906/kim-1711-35
Tomasz Głowacki, Adam Kozak, Piotr Formanowicz, „Dedicated Heuristic for Peptide Assembly Problem”, Current Bioinformatics, 13, 120-126, 2018. DOI: 10.2174/1574893612666170222092425
Dorota Formanowicz, Agnieszka Rybarczyk, Piotr Formanowicz, „Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets”, Fundamenta Informaticae, 160, 143-165, 2018. DOI: 10.3233/FI-2018-1678
Mariola Piślewska-Bednarek, Ryohei Thomas Nakano, Kei Hiruma, Marta Pastorczyk, Andrea Sanchez-Vallet, Suthitar Singkaravanit-Ogawa, Danuta Ciesiołka, Yoshitaka Takano, Antonio Molina, Paul Schulze-Lefert, Paweł Bednarek, „Glutathione Transferase U13 Functions in Pathogen-Triggered Glucosinolate Metabolism”, Plant Physiology, 176, 538-551, 2018. DOI: 10.1104/pp.17.01455
Anna Parus, Aleksandra Wojciechowska, Grzegorz Framski, Dominika Radzikowska, Wiesław Koziara, Piotr Szulc, „Effects of quaternary pyridinium ketoximes on germination and growth of maize”, Fresenius Environmental Bulletin, 27, 1669-1680, 2018. https://www.researchgate.net/publication/325379545_Effects_of_quaternary_pyridinium_ketoximes_on_germination_and_growth_of_maize
Michał Gładysz, Piotr Ruszkowski, Jan Milecki, „Synthesis and cytotoxic activity of novel acyclic nucleoside analogues with functionality in click chemistry”, Nucleosides, Nucleotides & Nucleic Acids, 37, 53-66, 2018. DOI: 10.1080/15257770.2017.1417598
Witold Andrałojć, Enrico Ravera, „Treating Biomacromolecular Conformational Variability”, Paramagnetism in Experimental Biomolecular NMR, 16, 107-133, 2018. DOI: 10.1039/9781788013291-00107
Nikolaus Rajewsky, Verena Maier, Stefan Jurga, Jan Barciszewski, „Systems Biology Preface”, Systems Biology, V-VII, 2018. DOI: 10.1007/978-3-319-92967-5

2017

Agnieszka Anna Rawłuszko-Wieczorek, Łukasz Marczak, Nikodem Horst, Karolina Horbacka, Piotr Krokowicz, Paweł Piotr Jagodziński, „Significance of intratissue estrogen concentration coupled with estrogen receptors levels in colorectal cancer prognosis”, Oncotarget, 8, 115546-115560, 2017. DOI: 10.18632/oncotarget.23309
Hongpo Wu, Mark Kwaaitaal, Roxana Strugala, Ulrich Schaffrath, Paweł Bednarek, Ralph Panstruga, „Chemical suppressors of mlo-mediated powdery mildew resistance”, Bioscence Reports, 37, art. nr BSR20171389, 2017. DOI: 10.1042/BSR20171389
Shawn M. Lyons, Dorota Gudanis, Steven M. Coyne, Zofia Gdaniec, Pavel Ivanov, „Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs”, Nature Communications, 8, art. nr 2020, 2017. DOI: 10.1038/s41467-017-02140-9
Hannes Svardal, Anna J. Jasińska, Cristian Apetrei, Giovanni Coppola, Yu Huang, Christopher A. Schmitt, Beatrice Jacquelin, Vasily Ramensky, Michaela Müller-Trutwin, Martin Antonio, George Weinstock, J. Paul Grobler, Ken Dewar, Richard K Wilson, Trudy R Turner, Wesley C. Warren, Nelson B. Freimer, Magnus Nordborg, „Ancient hybridization and strong adaptation to viruses across African vervet monkey populations”, Nature Genetics, 49, 1705–1713, 2017. DOI: 10.1038/ng.3980
Anna J. Jasińska, Ivette Zelaya, Susan K Service, Christine B. Peterson, Rita M. Cantor, Oi-Wa Choi, Joseph DeYoung, Eleazar Eskin, Lynn A. Fairbanks, Scott Fears, Allison E. Furterer, Yu S. Huang, Vasily Ramensky, Christopher A. Schmitt, Hannes Svardal, Matthew J. Jorgensen, Jay R. Kaplan, Diego Villar, Bronwen L. Aken, Paul Flicek, Rishi Nag, Emily S. Wong, John Blangero, Thomas D. Dyer, Marina Bogomolov, Yoav Benjamini, George M. Weinstock, Ken Dewar, Chiara Sabatti, Richard K Wilson, J. David Jentsch, Wesley Warren, Giovanni Coppola, Roger P. Woods, Nelson B. Freimer, „Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate”, Nature Genetics, 49, 1714–1721, 2017. DOI: 10.1038/ng.3959
Marcin Radom, Agnieszka Rybarczyk, Bartłomiej Szawulak, Hubert Andrzejewski, Piotr Chabelski, Adam Kozak, Piotr Formanowicz, „Holmes: a graphical tool for development, simulation and analysis of Petri net based models of complex biological systems”, Bioinformatics, 33, 3822–3823, 2017. DOI: 10.1093/bioinformatics/btx492
Angelika Świtalska, Ryszard Kierzek, Anna Dembska, Bernard Juskowiak, „Spectroscopic study of fluorescent probes based on G-quadruplex oligonucleotides labeled with ethynylpyrenyldeoxyuridine”, International Journal of Biological Macromolecules, 105, 862-872, 2017. DOI: 10.1016/j.ijbiomac.2017.07.107
Marcin Wierzchowski, Zbigniew Dutkiewicz, Agnieszka Gielara-Korzańska, Artur Korzański, Anna Teubert, Artur Teżyk, Tomasz Stefański, Wanda Baer-Dubowska, Renata Mikstacka, „Synthesis, biological evaluation and docking studies of trans-stilbene methylthio derivatives as cytochromes P450 family 1 inhibitors”, Chemical Biology & Drug Design, 90, 1226-1236, 2017. DOI: 10.1111/cbdd.13042
Marta Szabat, Ryszard Kierzek, „Parallel-stranded DNA and RNA duplexes – structural features and potential applications”, FEBS Journal, 284, 3986-3998, 2017. DOI: 10.1111/febs.14187
Aleksander Strugała, Monika Kręcisz, Jakub Dalibor Rybka, Anna Urbanowicz, Kamil Szpotkowski, Paulina Bierwagen,Marek Figlerowicz, Maciej Kozak, Christoph Böttcher, Michał Giersig, „Biophysical analysis of BMV virions purified using a novel method”, Journal of Chromatography B, 1068-1069, 157-163, 2017. DOI: 10.1016/j.jchromb.2017.10.022
Marta Soszyńska-Jóźwiak, Paula Michalak, Walter N. Moss, Ryszard Kierzek, Julita Kęsy, Elżbieta Kierzek, „Influenza virus segment 5 (+)RNA - secondary structure and new targets for antiviral strategies”, Scientific Reports, 7, art. nr 15041, 2017. DOI: 10.1038/s41598-017-15317-5
Jill Sergesketter Napierala, Yanjie Li, Yue Lu, Kevin Lin, Lauren A. Hauser, David R. Lynch, Marek Napierała, „Comprehensive analysis of gene expression patterns in Friedreich's ataxia fibroblasts by RNA sequencing reveals altered levels of protein synthesis factors and solute carriers”, Disease Models & Mechanisms, 10, 1353-1369, 2017. DOI: 10.1242/dmm.030536
Zhipu Luo, Zbigniew Dauter, Mirosław Gilski, „Four highly pseudosymmetric and/or twinned structures of d(CGCGCG) 2 extend the repertoire of crystal structures of Z-DNA”, Acta Crystallographica Section D – Structural Biology, 73, 940-951, 2017. DOI: 10.1107/S2059798317014954
Paulina Jackowiak, Anna Hojka-Osińska, Katarzyna Gąsiorek, Michał Stelmaszczuk, Dorota Gudanis, Zofia Gdaniec, Marek Figlerowicz, „Effects of G-quadruplex topology on translational inhibition by tRNA fragments in mammalian and plant systems in vitro”, International Journal of Biochemistry & Cell Biology, 92, 148-154, 2017. DOI: 10.1016/j.biocel.2017.10.001
Maciej Szymański, Jan Barciszewski, „The path to the genetic code”, Biochimica et Biophysica Acta (BBA) - General Subjects, 1861, 2674-2679, 2017. DOI: 10.1016/j.bbagen.2017.07.009
Krzysztof Brzeziński, Justyna Czyrko, Joanna Śliwiak, Edyta Nalewajko-Sieliwoniuk, Mariusz Jaskólski, Bogusław Nocek, Zbigniew Dauter, „S-adenosyl-L-homocysteine hydrolase from a hyperthermophile (Thermotoga maritima) is expressed in Escherichia coli in inactive form – Biochemical and structural studies”, International Journal of Biological Macromolecules, 104, 584-596, 2017. DOI: 10.1016/j.ijbiomac.2017.06.065
Bartosz Marciniak, Justyna Walkowiak-Kulikowska, Henryk Koroniak „On the halofluorination reactions of olefins as selective, and an efficient methodology for the introduction of fluorine into organic molecules”, Journal of Fluorine Chemistry, 203, 47-61, 2017. DOI: 10.1016/j.jfluchem.2017.09.001
Shawn M. Lyons, Dorota Gudanis, Steven M. Coyne, Zofia Gdaniec, Pavel Ivanov, „Identification of functional tetramolecular RNA G-quadruplexes derived from transfer RNAs”, Nature Communications, 8, art. nr 1127, 2017. DOI: 10.1038/s41467-017-01278-w
Jakub Wiedemann, Tomasz Żok, Maciej Miłostan, Marta Szachniuk, „LCS-TA to identify similar fragments in RNA 3D structures”, BMC Bioinformatics, 18, art. nr 456, 2017. DOI: 10.1186/s12859-017-1867-6
Anna Dembska, Elżbieta Kierzek, Bernard Juskowiak, „Studying the influence of stem composition in pH-sensitive molecular beacons onto their sensing properties”, Analytica Chimica Acta, 990, 157-167, 2017. DOI: 10.1016/j.aca.2017.07.040
Łukasz Gałgański, Martyna O. Urbanek, Włodzimierz J. Krzyżosiak, „Nuclear speckles: molecular organization, biological function and role in disease”, Nucleic Acids Research, 45, 10350–10368, 2017. DOI: 10.1093/nar/gkx759
Lizzette M. Gómez Ramos, Natalya N. Degtyareva, Nicholas A. Kovacs, Stefany Y. Holguin, Liuwei Jiang, Anton S. Petrov, Marcin Biesiada, Michael Y. Hu, Katarzyna J. Purzycka, Dev P. Arya, Loren Dean Williams, „Eukaryotic Ribosomal Expansion Segments as Antimicrobial Targets”, Biochemistry, 56, 5288-5299, 2017. DOI: 10.1021/acs.biochem.7b00703
Dorota Magner, Ewa Biała, Jolanta Lisowiec-Wąchnicka, Ryszard Kierzek, „Influence of mismatched and bulged nucleotides on SNP-preferential RNase H cleavage of RNA-antisense gapmer heteroduplexes”, Scientific Reports, 7, art. nr 12532, 2017. DOI: 10.1038/s41598-017-12844-z
Adam Jarmuła, Piotr Wilk, Piotr Maj, Jan Ludwiczak, Anna Dowierciał, Katarzyna Banaszak, Wojciech Rypniewski, Joanna Cieśla, Magdalena Dąbrowska, Tomasz Frączyk, Agnieszka K. Bronowska, Jakub Jakowiecki, Sławomir Filipek, Wojciech Rode, „Crystal structures of nematode (parasitic T. spiralis and free living C. elegans), compared to mammalian, thymidylate synthases (TS). Molecular docking and molecular dynamics simulations in search for nematode-specific inhibitors of TS”, Journal of Molecular Graphics & Modelling, 77, 33-50, 2017. DOI: 10.1016/j.jmgm.2017.08.008
Marek C. Milewski,Karol Kamel, Anna Kurzyńska-Kokorniak, Marcin K. Chmielewski, Marek Figlerowicz, „EvOligo: A Novel Software to Design and Group Libraries of Oligonucleotides Applicable for Nucleic Acid-Based Experiments”, Journal of Computational Biology, 24, 1014-1028, 2017. DOI: 10.1089/cmb.2016.0154
Katarzyna Klonowska, Wojciech Kluźniak, Bogna Rusak, Anna Jakubowska, Magdalena Ratajska, Natalia Krawczyńska, Danuta Vasilevska, Karol Czubak, Marzena Wojciechowska, Cezary Cybulski, Jan Lubiński, Piotr Kozłowski, „The 30 kb deletion in the APOBEC3 cluster decreases APOBEC3A and APOBEC3B expression and creates a transcriptionally active hybrid gene but does not associate with breast cancer in the European population”, Oncotarget, 8, 76357-76374, 2017. DOI: 10.18632/oncotarget.19400
Wojciech J. Szlachcic, Kalina Wiatr, Marta Trzeciak, Marek Figlerowicz, Maciej Figiel, „The Generation of Mouse and Human Huntington Disease iPS Cells Suitable for In vitro Studies on Huntingtin Function”, Frontiers in Molecular Neuroscience, 10, art. nr 312, 2017. DOI: 10.3389/fnmol.2017.00312
M. Lożyński, J. Pernak, Z. Gdaniec, B. Górska, F. Béguin, „Proof of ion-pair structures in ammonium-based protic ionic liquids using combined NMR and DFT/PCM-based chemical shift calculations”, Physical Chemistry Chemical Physics, 36, 25033-25043, 2017. DOI: 10.1039/c7cp04481j
Agnieszka Woźniak, Kinga Drzewiecka, Jacek Kęsy, Łukasz Marczak, Dorota Narożna, Marcin Grobela, Rafał Motała, Jan Bocianowski, Iwona Morkunas, „The Influence of Lead on Generation of Signalling Molecules and Accumulation of Flavonoids in Pea Seedlings in Response to Pea Aphid Infestation”, Molecules, 22, art. nr 1404, 2017. DOI: 10.3390/molecules22091404
Vasso Makrantoni, Adam Ciesiołka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark, „A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis”, G3 Genes|Genomes|Genetics, 7, 3203–3215, 2017. DOI: 10.1534/g3.117.300089
Grzegorz Framski, Tomasz Goślinski, Piotr Januszczyk, Bożenna Golankiewicz, Tomasz Ostrowski, „Alkylation of 9-substituted guanine derivatives with α,ω-dihaloalkanes”, Hetereoatom Chemistry, 28, art. nr e21399, 2017. DOI: 10.1002/hc.21399
Barbara Swarcewicz, Aneta Sawikowska, Łukasz Marczak, Magdalena Łuczak, Danuta Ciesiołka, Karolina Krystkowiak, Anetta Kuczyńska, Mariola Piślewska-Bednarek, Paweł Krajewski, Maciej Stobiecki, „Effect of drought stress on metabolite contents in barley recombinant inbred line population revealed by untargeted GC–MS profiling”, Acta Physiologiae Plantarum, 39, art. nr 158, 2017. DOI: 10.1007/s11738-017-2449-y
Katarzyna Lepeta, Katarzyna J. Purzycka, Katarzyna Pachulska-Wieczorek, Marina Mitjans, Martin Begemann, Behnam Vafadari, Krystian Bijata, Ryszard W. Adamiak, Hannelore Ehrenreich, Magdalena Dziembowska, Leszek Kaczmarek, „A normal genetic variation modulates synaptic MMP-9 protein levels and the severity of schizophrenia symptoms”, Embo Molecular Medicine, 9, 1100-1116, 2017. DOI: 10.15252/emmm.201707723
Natalia Szostak, Jarosław Synak, Marcin Borowski, Szymon Wasik, Jacek Błażewicz, „Simulating the origins of life: The dual role of RNA replicases as an obstacle to evolution”, Plos One, 12, art. nr e0180827, 2017. DOI: 10.1371/journal.pone.0180827
A. Zdarta, J. Tracz, M. Łuczak, U. Guzik, E. Kaczorek, „Hydrocarbon-induced changes in proteins and fatty acids profiles of Raoultella ornithinolytica M03”, Journal of Proteomics, 164, 43-51, 2017. DOI: 10.1016/j.jprot.2017.05.028
Leszek Błaszczyk, Wojciech Rypniewski, Agnieszka Kiliszek, „Structures of RNA repeats associated with neurological diseases”, Wiley Interdisciplinary Reviews- RNA, 8, art. nr e1412, 2017. DOI: 10.1002/wrna.1412
Martyna O. Urbanek, Włodzimierz J. Krzyżosiak, „Discriminating RNA variants with single-molecule allele-specific FISH”, Mutation Research/Reviews in Mutation Research, 773, 230-241, 2017. DOI: 10.1016/j.mrrev.2016.09.003
Jolanta Długaszewska, Wojciech Szczolko, Tomasz Koczorowski, Paulina Skupin-Mrugalska, Anna Teubert, Krystyna Konopka, Małgorzata Kucińska, Marek Murias, Nejat Düzgüneş, Jadwiga Mielcarek, Tomasz Gośliński, „Antimicrobial and anticancer photodynamic activity of a phthalocyanine photosensitizer with N-methyl morpholiniumethoxy substituents in non-peripheral positions”, Journal of Inorganic Biochemistry, 172, 67-79, 2017. DOI: 10.1016/j.jinorgbio.2017.04.009
Paulina Jackowiak, Anna Hojka-Osińska, Anna Philips, Agnieszka Żmieńko, Lucyna Budźko, Patrick Maillard, Agata Budkowska, Marek Figlerowicz, „Small RNA fragments derived from multiple RNA classes – the missing element of multi-omics characteristics of the hepatitis C virus cell culture model”, BMC Genomics, 18, art. nr 502, 2017. DOI: 10.1186/s12864-017-3891-3
Katarzyna Monika Lamperska, Tomasz Kolenda, Anna Teresiak, Anna Kowalik, Marta Kruszyna-Mochalska, Weronika Jackowiak, Renata Bliźniak, Weronika Przybyła, Marta Kapałczyńska, Piotr Kozłowski, „Different levels of let-7d expression modulate response of FaDu cells to irradiation and chemotherapeutics”, Plos One, 12, art. nr e0180265, 2017. DOI: 10.1371/journal.pone.0180265
Lucyna Budźko, Paulina Jackowiak, Karol Kamel, Joanna Sarzyńska, Janusz M. Bujnicki, Marek Figlerowicz, „Mutations in human AID differentially affect its ability to deaminate cytidine and 5-methylcytidine in ssDNA substrates in vitro”, Scientific Reports, 7, art. nr 3873, 2017. DOI: 10.1038/s41598-017-03936-x
Hannah Kuhn, Justine Lorek, Mark Kwaaitaal, Chiara Consonni, Katia Becker, Cristina Micali, Emiel Ver Loren van Themaat, Paweł Bednarek, Tom M. Raaymakers, Michela Appiano, Yuling Bai, Dorothea Meldau, Stephani Baum, Uwe Conrath, Ivo Feussner, Ralph Panstruga, „Key Components of Different Plant Defense Pathways Are Dispensable for Powdery Mildew Resistance of the Arabidopsis mlo2 mlo6 mlo12 Triple Mutant”, Frontiers in Plant Science, 8, art. nr 1006, 2017. DOI: 10.3389/fpls.2017.01006
Anna Philips, Ireneusz Stolarek, Bogna Kuczkowska, Anna Juras, Luiza Handschuh, Janusz Piontek, Piotr Kozłowski, Marek Figlerowicz, „Comprehensive analysis of microorganisms accompanying human archaeological remains”, GigaScience, 6, art. nr gix044, 2017. DOI: 10.1093/gigascience/gix044
Agnieszka Kiliszek, Leszek Błaszczyk, Ryszard Kierzek, Wojciech Rypniewski, „Stabilization of RNA hairpins using non-nucleotide linkers and circularization”, Nucleic Acids Research, 45, e92,2017. 10.1093/nar/gkx122
Agnieszka Rybarczyk, Alain Hertz, Marta Kasprzak, Jacek Błażewicz, „Tabu Search for the RNA Partial Degradation Problem”, International Journal of Applied Mathematics and Computer Science, 27, 401-415, 2017. DOI: 10.1515/amcs-2017-0028
Michał Gładysz, Joanna Nowak-Karnowska, Anna Pasternak, Jan Milecki, „Synthesis and hybridization properties of oligonucleotide analogues with novel acyclic triazole internucleotide linkages”, Bioorganic Chemistry, 72, 161-167, 2017. DOI: 10.1016/j.bioorg.2017.04.004
Wanda Biała, Joanna Banasiak, Karolina Jarzyniak, Aleksandra Pawela, Michał Jasiński, „Medicago truncatula ABCG10 is a transporter of 4-coumarate and liquiritigenin in the medicarpin biosynthetic pathway”, Journal of Experimental Botany, 68, 3231–3241, 2017. DOI: 10.1093/jxb/erx059
Anna Dowierciał, Adam Jarmuła, Piotr Wilk, Wojciech Rypniewski, Monika Kowalska, Tomasz Frączyk, Joanna Cieśla, Wojciech Rode, „Mouse thymidylate synthase does not show the inactive conformation, observed for the human enzyme”, Structural Chemistry, 28, 667–674, 2017. DOI: 10.1007/s11224-016-0840-8
Kaja Chmielewska, Dorota Formanowicz, Piotr Formanowicz, „The effect of cigarette smoking on endothelial damage and atherosclerosis development - modeled and analyzed using Petri nets”, Archives of Control Sciences, 27, 211-228, 2017. DOI: 10.1515/acsc-2017-0013
Ravyn M. Thompson, Dominik Dytfeld, Leticia Reyes, Reeder M. Robinson, Brittany Smith, Yefim Manevich, Andrzej Jakubowiak, Mieczysław Komarnicki, Anna Przybyłowicz-Chalecka, Tomasz Szczepaniak, Amit K. Mitra, Brian G. Van Ness, Magdalena Łuczak, Nathan G. Dolloff, „Glutaminase inhibitor CB-839 synergizes with carfilzomib in resistant multiple myeloma cells”, Oncotarget, 8, 35863-35876, 2017. DOI: 10.18632/oncotarget.16262
Martyna O. Urbanek, Michał Michalak, Włodzimierz J. Krzyżosiak, „2D and 3D FISH of expanded repeat RNAs in human lymphoblasts”, Methods, 120, 49-57, 2017. DOI: 10.1016/j.ymeth.2017.04.002
Bartłomiej Budny, Ewelina Szczepanek-Parulska, Tomasz Żemojtel, Witold Szaflarski, Małgorzata Rydzanicz, Joanna Wesoły, Luiza Handschuh, Kosma Woliński, Katarzyna Piątek, Marek Niedziela, Katarzyna Ziemnicka, Marek Figlerowicz, Maciej Zabel, Marek Ruchała, „Mutations in proteasome-related genes are associated with thyroid hemiagenesis”, Endocrine, 56, 279–285, 2017. DOI: 10.1007/s12020-017-1287-4
Marcin Ożarowski, Przemysław L. Mikołajczak, Anna Piasecka, Radosław Kujawski, Joanna Bartkowiak-Wieczorek, Anna Bogacz, Michał Szulc, Ewa Kamińska, Małgorzata Kujawska, Agnieszka Gryszczyńska, Piotr Kachlicki, Waldemar Buchwald, Andrzej Klejewski, Agnieszka Seremak- Mrozikiewicz, „Effect of Salvia miltiorrhiza root extract on brain acetylcholinesterase and butyrylcholinesterase activities, their mRNA levels and memory evaluation in rats”, Physiology & Behavior, 173, 223-230, 2017. DOI: 10.1016/j.physbeh.2017.02.019
Zhichao Miao, Ryszard W. Adamiak, Maciej Antczak, Robert T. Batey, Alexander J. Becka, Marcin Biesiada, Michał J. Boniecki, Janusz M. Bujnicki, Shi-Jie Chen, Clarence Yu Cheng, Fang-Chieh Chou, Adrian R. Ferré-D'Amaré, Rhiju Das, Wayne K. Dawson, Feng Ding, Nikolay V. Dokholyan, Stanisław Dunin-Horkawicz, Caleb Geniesse, Kalli Kappel, Wipapat Kladwang, Andrey Krokhotin, Grzegorz E. Łach, François Major, Thomas H. Mann, Marcin Magnus, Katarzyna Pachulska-Wieczorek, Dinshaw J. Patel, Joseph A. Piccirilli, Mariusz Popenda, Katarzyna J. Purzycka, Aiming Ren, Greggory M. Rice, John Santalucia Jr., Joanna Sarzyńska, Marta Szachniuk, Arpit Tandon, Jeremiah J. Trausch, Siqi Tian, Jian Wang, Kevin M. Weeks, Benfeard Williams II, Yi Xiao, Xiaojun Xu, Dong Zhang, Tomasz Zok, Eric Westhof, „RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme”, RNA, 23, 655-672, 2017. DOI: 10.1261/rna.060368.116
Tomasz Manszewski, Kamil Szpotkowski, Mariusz Jaskólski, „Crystallographic and SAXS studies of S-adenosyl-l-homocysteine hydrolase from Bradyrhizobium elkanii”, IUCrJ, 4, 271-282, 2017. DOI: 10.1107/S2052252517002433
Irmina Wojciechowska, Aleksandra Wojciechowska, Karolina Wieszczycka, Przemysław Aksamitowski, Joanna Zembrzuska, Grzegorz Framski, „Quantitative analysis of amphiphilic N-alkyloxypyridinecarboximidamide by liquid chromatography-tandem mass spectrometry”, Chemical Papers, 71, 953-960, 2017. DOI: 10.1007/s11696-016-0019-1
Natalia Szostak, Szymon Wasik, Jacek Błażewicz, „Understanding Life: A Bioinformatics Perspective”, European Review, 25, 231-245, 2017. DOI: 10.1017/S1062798716000570
Adam Ciesiołka, Magdalena Jazurek, Karolina Drążkowska, Włodzimierz J. Krzyżosiak, „Structural Characteristics of Simple RNA Repeats Associated with Disease and their Deleterious Protein Interactions”, Frontiers in Cellular Neuroscience, 11, art. nr 97, 2017. DOI: 10.3389/fncel.2017.00097
Joanna Trubicka, Tomasz Żemojtel, Jochen Hecht, Katarzyna Falana, Dorota Piekutowska- Abramczuk, Rafał Płoski, Marta Perek-Polnik, Monika Drogosiewicz, Wiesława Grajkowska, Elżbieta Ciara, Elżbieta Moszczyńska, Bożenna Dembowska-Bagińska, Danuta Perek, Krystyna H. Chrzanowska, Małgorzata Krajewska-Walasek, Maria Łastowska, „The germline variants in DNA repair genes in pediatric medulloblastoma: a challenge for current therapeutic strategies”, BMC Cancer, 17, art. nr 239, 2017. DOI: 10.1186/s12885-017-3211-y
Anita Kośmider, Edyta Czepielewska, Mieczysław Kuraś, Krzysztof Gulewicz, Wioleta Pietrzak, Renata Nowak, Grażyna Nowicka, „Uncaria tomentosa Leaves Decoction Modulates Differently ROS Production in Cancer and Normal Cells, and Effects Cisplatin Cytotoxicity”, Molecules, 22, art. nr 620, 2017. DOI: 10.3390/molecules22040620
Zofia Jahnz-Wechmann, Jolanta Lisowiec-Wąchnicka,Grzegorz Framski, Joanna Kosman, Jerzy Boryski, Anna Pasternak, „Thermodynamic, structural and fluorescent characteristics of DNA hairpins containing functionalized pyrrolo-2′-deoxycytidines”, Bioorganic Chemistry, 71, 294-298, 2017. DOI: 10.1016/j.bioorg.2017.02.014
Heping Zheng, Karol M. Langner, Gregory P. Shields, Jing Hou, Marcin Kowiel, Frank H. Allen, Garib Murshudov, Wladek Minor, „Data mining of iron(II) and iron(III) bond-valence parameters, and their relevance for macromolecular crystallography”, Acta Crystallographica Section D – Structural Biology, DOI: 10.1107/S2059798317000584
Mirosława Skupińska, Piotr Stępniak, Iwona Łętowska, Leszek Rychlewski, Mirosława Barciszewska,Jan Barciszewski, Małgorzata Giel-Pietraszuk, „Natural Compounds as Inhibitors of Tyrosyl-tRNA Synthetase”, Microbal Drug Resistance, 23, 308-320, 2017. DOI: 10.1089/mdr.2015.0272
Leszek Błaszczyk, Marcin Biesiada, Agniva Saha, David J. Garfinkel, Katarzyna J. Purzycka, „Structure of Ty1 Internally Initiated RNA Influences Restriction Factor Expression”, Viruses, 9, art. nr 74, 2017. DOI: 10.3390/v9040074
Małgorzata Rogalińska, Paweł Góralski, Jerzy Z. Błoński, Paweł Robak, Jan Barciszewski, Aneta Koceva‑Chyła, Henryk Piekarski, Tadeusz Robak, Zofia M. Kiliańska, „Personalized therapy tests for the monitoring of chronic lymphocytic leukemia development”, Oncology Letters, 13, 2079-2084, 2017. DOI: 10.3892/ol.2017.5725
Martyna O. Urbanek, Agnieszka Fiszer, Włodzimierz J. Krzyżosiak, „Reduction of Huntington’s Disease RNA Foci by CAG Repeat-Targeting Reagents”, Frontiers in Cellular Neuroscience, 11, art. nr 82, 2017. DOI: 10.3389/fncel.2017.00082
Dorota Formanowicz, Marcin Radom, Piotr Zawierucha, Piotr Formanowicz, „Petri net-based approach to modeling and analysis of selected aspects of the molecular regulation of angiogenesis”, Plos One, 12, art. nr e0173020, 2017. DOI: 10.1371/journal.pone.0173020
Małgorzata Kesik-Brodacka, Agnieszka Lipiec, Monika Kozak-Ljunggren, Luiza Jedlina, Katarzyna Miedzińska, Magdalena Mikołajczak, Andrzej Plucienniczak, Andrzej B. Legocki, Halina Wedrychowicz, „Immune response of rats vaccinated orally with various plant-expressed recombinant cysteine proteinase constructs when challenged with Fasciola hepatica metacercariae”, PLoS Neglected Tropical Diseases, 11, 1-18, 2017. DOI: 10.1371/journal.pntd.0005451
Stuart F. J. Le Grice, Joanna Sztuba-Solińska, Elias Maccioni, Katarzyna J. Purzycka, Cristina Parolin, Enzo Tramontano, „Meeting report: Third Summer School on Innovative Approaches for Identification of Antiviral Agents (IAAASS)”, Antiviral Research, 139, 13-17, 2017. DOI: 10.1016/j.antiviral.2016.12.004
Michał Matuszewski, Jakub Wojciechowski, Kenjyo Miyauchi, Zofia Gdaniec, Wojciech M. Wolf, Tsutomu Suzuki, Elżbieta Sochacka, „A hydantoin isoform of cyclic N6-threonylcarbamoyladenosine (ct6A) is present in tRNAs”, Nucleic Acids Research, 45, 2137–2149, 2017. DOI: 10.1093/nar/gkw1189
Anna Samelak-Czajka, Małgorzata Marszałek-Zeńczak, Małgorzata Marcinkowska-Swojak, Piotr Kozłowski, Marek Figlerowicz, Agnieszka Żmieńko, „MLPA-Based Analysis of Copy Number Variation in Plant Populations”, Frontiers in Plant Science, 8, 222, 2017. DOI: 10.3389/fpls.2017.00222
Khoosheh Khayati, Henri Antikainen, E. Bonder, Gregory F. Weber, W. Kruger, Hieronim Jakubowski, Radek Dobrowolski, „The amino acid metabolite homocysteine activates mTORC1 to inhibit autophagy and form abnormal proteins in human neurons and mice”, FASEB Journal, 31, 598-609, 2017. DOI: 10.1096/fj.201600915R
M. Baranek, A. Belter, M. Z. Naskręt-Barciszewska, M. Stobiecki, W. T. Markiewicz, J. Barciszewski, „Effect of small molecules on cell reprogramming”, Molecular BioSystems, 13, 277-313, 2017. DOI: 10.1039/c6mb00595k
Wojciech Smułek, Agata Zdarta, Amanda Pacholak, Agnieszka Zgoła-Grześkowiak, Łukasz Marczak, Maciej Jarzębski, Ewa Kaczorek, „Saponaria officinalis L. extract: Surface active properties and impact on environmental bacterial strains”, Colloids and Surfaces B: Biointerfaces, 150, 209-215, 2017. DOI: 10.1016/j.colsurfb.2016.11.035
Agnieszka Woźniak, Magda Formela, Piotr Bilman, Katarzyna Grześkiewicz, Waldemar Bednarski, Łukasz Marczak, Dorota Narożna, Katarzyna Dancewicz, Van Chung Mai, Beata Borowiak-Sobkowiak, Jolanta Floryszak-Wieczorek, Beata Gabryś, Iwona Morkunas, „The Dynamics of the Defense Strategy of Pea Induced by Exogenous Nitric Oxide in Response to Aphid Infestation”, International Journal of Molecular Sciences, 18, art. nr 329, 2017. DOI: 10.3390/ijms18020329
Aleksandra Kasprowicz, Kamila Stokowa-Sołtys, Małgorzata Jeżowska-Bojczuk, Jan Wrzesiński, Jerzy Ciesiołka, „Characterization of Highly Efficient RNA-Cleaving DNAzymes that Function at Acidic pH with No Divalent Metal-Ion Cofactors”, ChemistryOpen, 6, 46-56, 2017. DOI: 10.1002/open.201600141
Agnieszka Mickiewicz, Joanna Sarzyńska, Maciej Miłostan, Anna Kurzyńska-Kokorniak, Agnieszka Rybarczyk, Piotr Łukasiak, Tadeusz Kuliński, Marek Figlerowicz, Jacek Błażewicz, „Modeling of the catalytic core of Arabidopsis thaliana Dicer-like 4 protein and its complex with double-stranded RNA”, Computational Biology and Chemistry, 66, 44-56, 2017. DOI: 10.1016/j.compbiolchem.2016.11.003
Tobias Penzkofer, Marten Jäger, Marek Figlerowicz, Richard Badge, Stefan Mundlos, Peter N. Robinson, Tomasz Zemojtel, „L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes”, Nucleic Acids Research, 45, D68–D73, 2017. DOI: 10.1093/nar/gkw925
Małgorzata Roś-Mazurczyk, Anna Wojakowska, Łukasz Marczak, Krzysztof Polański, Monika Pietrowska, Karol Jelonek, Iwona Domińczyk, Agata Hajduk, Tomasz Rutkowski, Krzysztof Składowski, Piotr Widłak, „Ionizing radiation induces changes in profile of metabolites in serum of cancer patients”, Acta Biochimica Polonica, 64, 189-193, 2017. DOI: 10.18388/abp.2016_1301
Małgorzata Roś-Mazurczyk, Anna Wojakowska, Łukasz Marczak, Krzysztof Polański, Monika Pietrowska, Joanna Polańska, Rafał Dziadziuszko, Jacek Jassem, Witold Rzyman, Piotr Widłak, „Panel of serum metabolites discriminates cancer patients and healthy participants of lung cancer screening – a pilot study”, Acta Biochimica Polonica, 64, 513-518, 2017. DOI: 10.18388/abp.2017_1517
Bogna Gryszczyńska, Dorota Formanowicz, Magdalena Budzyń, Maria Wanic-Kossowska, Elżbieta Pawliczak, Piotr Formanowicz, Wacław Majewski, Krzysztof Wojciech Strzyżewski, Magdalena P. Kasprzak, Maria Iskra, „Advanced Oxidation Protein Products and Carbonylated Proteins as Biomarkers of Oxidative Stress in Selected Atherosclerosis-Mediated Diseases”, BioMed Research International, 2017, art. nr 4975264, 2017. DOI: 10.1155/2017/4975264
Anna Krajczyk, Jerzy Boryski, „Dimroth Rearrangement-Old but not Outdated”, Current Organic Chemistry, 21, 2515-2529, 2017. DOI: 10.2174/1385272821666170427125720
Karol Szubert, Marta Piepiorka, Magdalena Jankowska-Wajda, Jolanta Brzezińska, Karol Pasternak, Natalia Remszel, Emilia Frydrych-Tomczak, Hieronim Maciejewski, Marcin K. Chmielewski, „Amino-functional Silsesquioxanes (POSS)-Effective Glass Surface Modifiers in Solidphase Nucleic Acid Synthesis”, Current Organic Chemistry,21, 2597-2604, 2017. DOI: 10.2174/1385272821666170222111024
Tomasz P. Kaczyński, Marcin K. Chmielewski, „Mini-Review of the Phosphate Center Activation Strategy in Nucleoside Triphosphate Preparation”, Mini-Reviews in Organic Chemistry, 14, 448-452, 2017. DOI: 10.2174/1570193X14666170420113635
Ryohei T. Nakano, Mariola Piślewska-Bednarek, Kenji Yamada, Patrick P. Edger, Mado Miyahara, Maki Kondo, Christoph Böttcher, Masashi Mori, Mikio Nishimura, Paul Schulze-Lefert, Ikuko Hara-Nishimura, Paweł Bednarek, „PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana”, Plant Journal, 89, 204-220, 2017. DOI: 10.1111/tpj.13377
Magdalena Łuczak, Tadeusz Kubicki, Zuzanna Rzetelska, Tomasz Szczepaniak, Anna Przybyłowicz-Chalecka, Błażej Ratajczak, Joanna Czerwińska-Rybak, Adam Nowicki, Monika Joks, Andrzej Jakubowiak, Mieczysław Komarnicki, Dominik Dytfeld, „Comparative proteomic profiling of sera from patients with refractory multiple myeloma reveals potential biomarkers predicting response to bortezomib-based therapy”, Polish Archives of Internal Medicine – Polskie Archiwum Medycyny Wewnętrznej, 127, 392-400, 2017. DOI: 10.20452/pamw.4032
Jennifer Gebetsberger, Leander Wyss, Anna M. Mleczko, Julia Reuther, Norbert Polacek, „A tRNA-derived fragment competes with mRNA for ribosome binding and regulates translation during stress”, RNA Biology, 14, 1364-1373, 2017. DOI: 10.1080/15476286.2016.1257470
J. Miśkiewicz, K. Tomczyk, A. Mickiewicz, J. Sarzyńska, M. Szachniuk, „Bioinformatics Study of Structural Patterns in Plant MicroRNA Precursors”, BioMed Research International, 2017, art. nr 6783010, 2017. DOI: 10.1155/2017/6783010
Monika Pietrowska, Sonja Funk, Marta Gawin, Łukasz Marczak, Agata Abramowicz, Piotr Widłak, Theresa Whiteside, „Isolation of Exosomes for the Purpose of Protein Cargo Analysis with the Use of Mass Spectrometry”, Functional Genomics: Methods and Protocols, 3rd edition, 1654, 291-307, 2017. DOI: 10.1007/978-1-4939-7231-9_22
Anna Walaszczyk, Monika Pietrowska, Anna Wojakowska, Agata Abramowicz, Aleksandra Chmura, Barbara Maslyk, Paweł Rodziewicz, Joanna Polańska, Katarzyna Behrendt, Elżbieta Nowicka, Rafał Tarnawski, Piotr Widlak, „Therapy-Related Changes in the Serum Proteome Patterns of Early Stage Breast Cancer Patients with Different Outcomes”, Protein and Peptide Letters, 24, 37-45, 2017. DOI: 10.2174/0929866523666161128154412
Tomasz Twardowski, Alfredo Aguilar, Pere Puigdomenech, Anna Linkiewicz, Sławomir Sowa, Tomasz Zimny, „European Union needs agro-bioeconomy”, BioTechnologia, 98, 73-78, 2017. DOI:10.5114/bta.2017.66619
Kornelia Czaja, Jacek Kujawski, Elżbieta Jodłowska-Siewert, Paulina Szulc, Tomasz Ratajczak, Dominika Krygier, Marcin K. Chmielewski, Marek K. Bernard, „On the Interactions of Fused Pyrazole Derivative with Selected Amino Acids: DFT Calculations”, Journal of Chemistry, 2017, art. nr 8124323, 2017. DOI: 10.1155/2017/8124323
Satoshi Fukunaga, Miho Sogame, Masaki Hata, Suthitar Singkaravanit-Ogawa, Mariola Piślewska-Bednarek, Mariko Onozawa-Komori, Takumi Nishiuchi, Kei Hiruma, Hiromasa Saitoh, Ryohei Terauchi, Saeko Kitakura, Yoshihiro Inoue, Paweł Bednarek, Paul Schulze-Lefert, Yoshitaka Takano, „Dysfunction of Arabidopsis MACPF domain protein activates programmed cell death via tryptophan metabolism in MAMP-triggered immunity”, Plant Journal, 89, 381-393, 2017. DOI: 10.1111/tpj.13391
Marta Olszewska, Mirosława Z. Barciszewska, Monika Fraczek, Nataliya Huleyuk, Vyacheslav B. Chernykh, Danuta Zastavna, Jan Barciszewski, Maciej Kurpisz, „Global methylation status of sperm DNA in carriers of chromosome structural aberrations”, Asian Journal of Andrology, 19, 117-124, 2017. DOI: 10.4103/1008-682X.168684
Nikolaus Rajewsky, Stefan Jurga, Jan Barciszewski, „Plant Epigenetics Preface”, Plant Epigenetcis, V-VII, 2017. DOI: 10.1007/978-3-319-55520-1

2016

Mateusz Sydow, Mikołaj Owsianiak, Zuzanna Szczepaniak, Grzegorz Framski, Barth F. Smets, Łukasz Ławniczak, Piotr Lisiecki, Alicja Szulc, Paweł Cyplik, Łukasz Chrzanowski, „Evaluating robustness of a diesel-degrading bacterial consortium isolated from contaminated soil”, New Biotechnology, 33, 852-859, 2016. DOI: 10.1016/j.nbt.2016.08.003
Kamilla Bąkowska-Żywicka, Anna M. Mleczko, Marta Kasprzyk, Piotr Machtel, Marek Żywicki, Tomasz Twardowski, „The widespread occurrence of tRNA-derived fragments in Saccharomyces cerevisiae”, FEBS Open Bio, 6, 1186-1200, 2016. DOI: 10.1002/2211-5463.12127
Agnieszka Ruszkowska, Elżbieta Lenartowicz, Walter N. Moss, Ryszard Kierzek, Elżbieta Kierzek, „Secondary structure model of the naked segment 7 influenza A virus genomic RNA”, Biochemical Journal, 473, 4327-4348, 2016. DOI: 10.1042/BCJ20160651
Bernhard Rupp, Alexander Wlodawer, Władek Minor, John R. Helliwell, Mariusz Jaskólski „Correcting the record of structural publications requires joint effort of the community and journal editors”, FEBS Journal, 283, 4452-4457, 2016. DOI: 10.1111/febs.13765
Agnieszka Fiszer, Joanna P. Wróblewska, Bartosz M. Nowak, Włodzimierz J. Krzyżosiak, „Mutant CAG Repeats Effectively Targeted by RNA Interference in SCA7 Cells”, Genes, 7, art. nr 132, 2016. DOI: 10.3390/genes7120132
Kamila Borowczyk, Grażyna Chwatko, Paweł Kubalczyk, Hieronim Jakubowski, Jolanta Kubalska, Rafał Głowacki, „Simultaneous Determination of Methionine and Homocysteine by on-column derivatization with o-phtaldialdehyde”, Talanta, 161, 917-924, 2016. DOI:10.1016/j.talanta.2016.09.039
Urszula Polak, Yanjie Li, Jill Sergesketter Butler, Marek Napierała, „Alleviating GAA Repeat Induced Transcriptional Silencing of the Friedreich's Ataxia Gene During Somatic Cell Reprogramming”, Stem Cells and Development, 25, 1788-1800, 2016. DOI: 10.1089/scd.2016.0147
Jacek Błażewicz, Benjamin Moseley, Eerwin Pesch, Denis Trystram, Guochuan Zhang, „New challenges in scheduling theory”, Journal of Scheduling, 19, 617-618, 2016. DOI: 10.1007/s10951-016-0503-z
Agnieszka Żmieńko, Anna Samelak-Czajka, Piotr Kozłowski, Maja Szymańska, Marek Figlerowicz, „Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location”, BMC Genomics, 17, art. nr 893, 2016. DOI: 10.1186/s12864-016-3221-1
Piotr Kachlicki, Anna Piasecka, Maciej Stobiecki, Łukasz Marczak, „Structural Characterization of Flavonoid Glycoconjugates and Their Derivatives with Mass Spectrometric Techniques”, Molecules, 21, art. nr 1494, 2016. DOI: 10.3390/molecules21111494
Magdalena Jazurek, Adam Ciesiołka, Julia Staręga-Rosłan, Katarzyna Bilińska, Włodzimierz J. Krzyżosiak, „Identifying proteins that bind to specific RNAs - focus on simple repeat expansion diseases”, Nucleic Acids Research, 44, 9050–9070, 2016. DOI: 10.1093/nar/gkw803
Laure D. Sultan, Daria Mileshina, Felix Grewe, Katarzyna Rolle, Sivan Abudraham, Paweł Głodowicz, Adnan Khan Niazi, Ido Keren, Sofia Shevtsov, Liron Klipcan, Jan Barciszewski, Jeffrey P. Mower, André Dietrich, Oren Ostersetzer-Biran, „The Reverse Transcriptase/RNA Maturase Protein MatR Is Required for the Splicing of Various Group II Introns in Brassicaceae Mitochondria”, Plant Cell, 28, 2805-2829, 2016. DOI: 10.1105/tpc.16.00398
Małgorzata Jędryczka, Magdalena Sadyś, Mirosław Gilski, Agnieszka Grinn-Gofron, Joanna Kaczmarek, Agnieszka Strzelczak, Roy Kennedy, „Contribution of Leptosphaeria species ascospores to autumn asthma in areas of oilseed rape production”, Annals of Allergy, Asthma & Immunology, 117, 495-501, 2016. DOI: 10.1016/j.anai.2016.08.027
Piotr Machtel, Kamilla Bąkowska-Żywicka, Marek Żywicki, „ Emerging applications of riboswitches - from antibacterial targets to molecular tools”, Journal of Applied Genetics, 57, 531–541, 2016. DOI: 10.1007/s13353-016-0341-x
P. Drożdżal, M. Gilski, M. Jaskólski, „Ultrahigh-resolution centrosymmetric crystal structure of Z-DNA reveals the massive presence of alternate conformations”, Acta Crystallographica Section D – Structural Biology, 72, 1203-1211, 2016. DOI: 10.1107/S205979831601679X
Joanna Perla-Kajan, Olga Utyro, Marta Rusek, Agata Malinowska, Ewa Sitkiewicz, Hieronim Jakubowski, „N-Homocysteinylation impairs collagen cross-linking in cystathionine β-synthase-deficient mice: a novel mechanism of connective tissue abnormalities”, FASEB Journal, 30, 3810-3821, 2016. DOI: 10.1096/fj.201600539
Edyta Jaworska, Emilia Kozłowska, Paweł M. Świtoński, Włodzimierz J. Krzyżosiak, „Modeling simple repeat expansion diseases with iPSC technology”, Cellular and Molecular Life Sciences, 73, 4085–4100, 2016. DOI: 10.1007/s00018-016-2284-0
Alicja E. Grzegorzewska, Mateusz Paciorkowski, Adrianna Mostowska, Bartosz Frycz, Wojciech Warchoł, Ireneusz Stolarek, Marek Figlerowicz, Paweł P. Jagodziński, "Associations of the calcium-sensing receptor gene CASR rs7652589 SNP with nephrolithiasis and secondary hyperparathyroidism in haemodialysis patients”, Scientific Reports, 6, art. nr 35188, 2016. DOI: 10.1038/srep35188
Katarzyna Klonowska, Luiza Handschuh, Aleksandra Świercz, Marek Figlerowicz, Piotr Kozłowski, „MTTE: an innovative strategy for the evaluation of targeted/exome enrichment efficiency”, Oncotarget, 7, 67266-67276, 2016. DOI: 10.18632/oncotarget.11646
Marissa B. Guzzo, Hoa T. Nguyen, Thanh H. Pham, Monika Wyszczelska-Rokiel, Hieronim Jakubowski, Kerstin A. Wolff, Sam Ogwang, Joseph L. Timpona, Soumya Gogula, Michael R. Jacobs, Markus Ruetz, Bernhard Kräutler, Donald W. Jacobsen, Guo-Fang Zhang,, Liem Nguye, „Methylfolate Trap Promotes Bacterial Thymineless Death by Sulfa Drugs”, PLoS Pathogens, 12, art. nr e1005949, 2016. DOI: 10.1371/journal.ppat.1005949
Monika Szulińska, Damian Skrypnik, Marzena Ratajczak, Joanna Karolkiewicz, Edyta Madry, Katarzyna Musialik, Jarosław Walkowiak, Hieronim Jakubowski, Paweł Bogdański, „Effects of Endurance and Endurance-strength Exercise on Renal Function in Abdominally Obese Women with Renal Hyperfiltration: A Prospective Randomized Trial”, Biomedical and Environmental Sciences, 29, 706-712, 2016. DOI: 10.3967/bes2016.095
Thomas Grenkowitz, Ursula Kassner, Marion Wühle-Demuth, Bastian Salewsky, Adrian Rosada, Tomasz Zemojtel, Werner Hopfenmüller, Berend Isermann, Katrin Borucki, Franz Heigl, Ulrich Laufs, Stephan Wagner Marcus E. Kleber, Priska Binner, Winfried März, Elisabeth Steinhagen-Thiessen, Ilja Demuth, „Clinical characterization and mutation spectrum of German patients with familial hypercholesterolemia”, Atherosclerosis, 253, 88-93, 2016. DOI: 10.1016/j.atherosclerosis.2016.08.037
Jill Sergesketter Butler, Marek Napierała, „New Reasons to Pursue the Therapeutic Potential of Synthetic Nucleic Acids for Neurological Diseases”, Jama Neurology, 73, 1175-1177, 2016. DOI: 10.1001/jamaneurol.2016.2571
Elżbieta Lenartowicz, Aitor Nogales, Elżbieta Kierzek, Ryszard Kierzek, Luis Martínez-Sobrido, Douglas H. Turner, „Antisense Oligonucleotides Targeting Influenza A Segment 8 Genomic RNA Inhibit Viral Replication”, Nucleic Acid Therapeutics, 26, 277-285, 2016. DOI: 10.1089/nat.2016.0619
Vladislav Victorovich Khrustalev, Tatyana Aleksandrovna Khrustaleva, Kamil Szpotkowski, Victor Vitoldovich Poboinev, Katsiaryna Yurieuna Kakhanouskaya, „The part of a long beta hairpin from the scrapie form of the human prion protein is reconstructed in the synthetic CC36 protein”, Protein – Structure Function and Bioinformatics, 84, 1462-1479, 2016. DOI: 10.1002/prot.25090
Marcin Kowiel, Dariusz Brzeziński, Mariusz Jaskólski, „Conformation-dependent restraints for polynucleotides: I. Clustering of the geometry of the phosphodiester group”, Nucleic Acids Research, 44, 8479-8489, 2016. DOI: 10.1093/nar/gkw717
M. Kręcisz, J. D. Rybka, A. J. Strugała, B. Skalski, M. Figlerowicz, M. Kozak, M. Giersig, „Interactions between magnetic nanoparticles and model lipid bilayers—Fourier transformed infrared spectroscopy (FTIR) studies of the molecular basis of nanotoxicity”, Journal of Applied Physics, 120, art. nr 124701, 2016. DOI: 10.1063/1.4962951
Łukasz Marczak, Paulina Znajdek-Awiżeń, Wiesława Bylka, „The Use of Mass Spectrometric Techniques to Differentiate Isobaric and Isomeric Flavonoid Conjugates from Axyris amaranthoides”, Molecules, 21, art. nr 1229, 2016. DOI: 10.3390/molecules21091229
Maciej Antczak, Marta Kasprzak, Piotr Łukasiak, Jacek Błażewicz, „Structural alignment of protein descriptors – a combinatorial model”, BMC Bioinformatics, 17, art. nr 383, 2016. DOI: 10.1186/s12859-016-1237-9
Zhongqi Li, Diana Oganesyan, Rachael Mooney, Xianfang Rong, Matthew J. Christensen, David Shahmanyan, Patrick M. Perrigue, Joseph Benetatos, Lusine Tsaturyan, Soraya Aramburo, Alexander J. Annala, Yang Lu, Joseph Najbauer, Xiwei Wu, Michael E. Barish, David L. Brody, Karen S. Aboody, Margarita Gutova, „L-MYC Expression Maintains Self-Renewal and Prolongs Multipotency of Primary Human Neural Stem Cells”, Stem Cell Reports, 7, 483-495, 2016. DOI: 10.1016/j.stemcr.2016.07.013
Magdalena Łuczak, Dorota Formanowicz, Łukasz Marczak, Joanna Suszyńska-Zajczyk, Elżbieta Pawliczak, Maria Wanic-Kossowska, Maciej Stobiecki, „iTRAQ-based proteomic analysis of plasma reveals abnormalities in lipid metabolism proteins in chronic kidney disease-related atherosclerosis”, Scientific Reports, 6, art. nr 32511, 2016. DOI: 10.1038/srep32511
Jacek Kujawski, Kornelia Czaja, Elżbieta Jodłowska, Katarzyna Dettlaff, Marta Politańska, Justyna Żwawiak, Radosław Kujawski, Tomasz Ratajczak, Marcin K. Chmielewski, Marek K. Bernard, „Structural and spectroscopic properties of econazole and sulconazole – Experimental and theoretical studies”, Journal of Molecular Structure, 1119, 250-258, 2016. DOI: 10.1016/j.molstruc.2016.04.065
Denise Horn, Bernhard Weschke, Ellen Knierim, Björn Fischer-Zirnsak, Werner Stenzel, Markus Schuelke, Tomasz Zemojtel, „BRAT1 mutations are associated with infantile epileptic encephalopathy, mitochondrial dysfunction, and survival into childhood”, American Journal of Medical Genetics Part A, 170, 2274-2281, 2016. DOI: 10.1002/ajmg.a.37798
Kamilla Bąkowska-Żywicka, Marta Kasprzyk, Tomasz Twardowski, „tRNA-derived short RNAs bind to Saccharomyces cerevisiae ribosomes in a stress-dependent manner and inhibit protein synthesis in vitro”, FEMS Yeast Research, 16, art. nr fow077, 2016. DOI: 10.1093/femsyr/fow077
J. Musiał , J.E. Pecero , M.C. Lopez-Loces , H.J. Fraire-Huacuja , P. Bouvry , J. Błażewicz, „Algorithms solving the Internet shopping optimization problem with price discounts”, Bulletin of the Polish Academy of Sciences: Technical Sciences, 64, 505-516, 2016. DOI: 10.1515/bpasts-2016-0056
Łukasz Marczak, Paulina Znajdek- Awiżeń, Wiesława Bylka, „The Use of Mass Spectrometric Techniques to Differentiate Isobaric and Isomeric Flavonoid Conjugates from Axyris amaranthoides”, Molecules, 21, art. nr 1229, 2016. DOI: 10.3390/molecules21091229
Damian Smedley, Max, Schubach, Julius O. B. Jacobsen, Sebastian Köhler, Tomasz Zemojtel, Malte Spielmann, Marten Jäger, Harry Hochheiser, Nicole L. Washington, Julie A. McMurry, Melissa A. Haendel, Christopher J. Mungall, Suzanna E. Lewis, Tudor Groza, Giorgio Valentini, Peter N. Robinson, „A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease”, American Journal of Human Genetics, 99, 595-606, 2016. DOI: 10.1016/j.ajhg.2016.07.005
Mateusz Chwastyk, Mariusz Jaskólski, Marek Cieplak, „The volume of cavities in proteins and virus capsids”, Proteins – Structure, Function and Bioinformatics, 84, 1275-1286, 2016. DOI: 10.1002/prot.25076
Katarzyna Wyrwa, Michał Książkiewicz, Anna Szczepaniak, Karolina Susek, Jan Podkowiński, Barbara Naganowska, „Integration of Lupinus angustifolius L. (narrow-leafed lupin) genome maps and comparative mapping within legumes”, Chromosome Research, 24, 355-378, 2016. DOI: 10.1007/s10577-016-9526-8
Martyna O. Urbanek, Magdalena Jazurek, Paweł M. Świtoński, Grzegorz Figura, Włodzimierz J. Krzyżosiak, „Nuclear speckles are detention centers for transcripts containing expanded CAG repeats”, Biochimica et Biophysica Acta - Molecular Basis of Disease, 1862, 1513-1520, 2016. DOI: 10.1016/j.bbadis.2016.05.015
Hieronim Jakubowski, „Quantification of urinary S- and N-homocysteinylated protein and homocysteine-thiolactone in mice”, Analytical Biochemistry, 508, 118-123, 2016. DOI: 10.1016/j.ab.2016.06.002
Dominik Dytfeld, Magdalena Łuczak, Tomasz Wróbel, Lidia Usnarska-Zubkiewicz, Katarzyna Brzezniakiewicz, Krzysztof Jamroziak, Krzysztof Giannopoulos, Anna Przybyłowicz-Chalecka, Błażej Ratajczak, Joanna Czerwińska-Rybak, Adam Nowicki, Monika Joks, Elżbieta Czechowska, Magdalena Zawartko, Tomasz Szczepaniak, Norbert Grzasko, Marta Morawska, Maciej Bochenek, Tadeusz Kubicki, Michalina Morawska, Katarzyna Tusznio, Andrzej Jakubowiak, Mieczysław Komarnicki, „Comparative proteomic profiling of refractory/relapsed multiple myeloma reveals biomarkers involved in resistance to bortezomib-based therapy”, Oncotarget, 7, 56726-56736, 2016. DOI: 10.18632/oncotarget.11059
Wojciech Ostrowski, Barbara Swarcewicz, Marta Nolka, Maciej Stobiecki, „Differentiation of phenylpropanoid acids cyclobutane- and dehydrodimers isomers in barley leaf cell walls with LC/MS/MS system”, International Journal of Mass Spectrometry, 407, 77-85, 2016. DOI: 10.1016/j.ijms.2016.07.003
Lucyna Budźko, Małgorzata Marcinkowska-Swojak, Paulina Jackowiak, Piotr Kozłowski, Marek Figlerowicz, „Copy number variation of genes involved in the hepatitis C virus-human interactome”, Scientific Reports, 6, art. nr 31340, 2016. DOI: 10.1038/srep31340
Jeannine Gerhardt, Angela D. Bhalla, Jill Sergesketter Butler, James W.Puckett, Peter B. Dervan, Zev Rosenwaks, Marek Napierała, „Stalled DNA Replication Forks at the Endogenous GAA Repeats Drive Repeat Expansion in Friedreich’s Ataxia Cells”, Cell Reports, 16, 1218-1227, 2016. DOI: 10.1016/j.celrep.2016.06.075
Yanjie Li, Urszula Polak, Amanda D. Clark, Angela D. Bhalla, Yu-Yun Chen, Jixue Li, Jennifer Farmer, Lauren Seyer, David Lynch, Jill S. Butler, Marek Napierała, „Establishment and Maintenance of Primary Fibroblast Repositories for Rare Diseases—Friedreich's Ataxia Example”, Biopreservation and Biobanking, 14, 324-329, 2016. DOI: 10.1089/bio.2015.0117
Klaudia Chmielewska, Paweł Rodziewicz, Barbara Swarcewicz, Aneta Sawikowska, Paweł Krajewski, Łukasz Marczak, Danuta Ciesiołka, Anetta Kuczyńska, Krzysztof Mikołajczak, Piotr Ogrodowicz, Karolina Krystkowiak, Maria Surma, Tadeusz Adamski, Paweł Bednarek, Maciej Stobiecki, „Analysis of Drought-Induced Proteomic and Metabolomic Changes in Barley (Hordeum vulgare L.) Leaves and Roots Unravels Some Aspects of Biochemical Mechanisms Involved in Drought Tolerance”, Frontiers in Plant Science, 7, art. nr 1108, 2016. DOI: 10.3389/fpls.2016.01108
Dawid Perlikowski, Mariusz Czyżniejewski, Łukasz Marczak, Adam Augustyniak, Arkadiusz Kosmala, „Water Deficit Affects Primary Metabolism Differently in Two Lolium multiflorum/Festuca arundinacea Introgression Forms with a Distinct Capacity for Photosynthesis and Membrane Regeneration”, Frontiers in Plant Science, 7, art. nr 1063, 2016. DOI: 10.3389/fpls.2016.01063
Anna Krajczyk, Joanna Zeidler, Piotr Januszczyk, Surendra Dawadi, Helena I. Boshoff, Clifton E. Barry III, Tomasz Ostrowski, Courtney C. Aldrich, „2-Aryl-8-aza-3-deazaadenosine analogues of 5′-O-[N-(salicyl)sulfamoyl]adenosine: Nucleoside antibiotics that block siderophore biosynthesis in Mycobacterium tuberculosis”, Bioorganic & Medicinal Chemistry, 24, 3133-3143, 2016. DOI: 10.1016/j.bmc.2016.05.037
Magdalena Zielińska-Dawidziak, Halina Staniek, Ewelina Król, Dorota Piasecka-Kwiatkowska, Tomasz Twardowski, „Legume seeds and cereal grains' capacity to accumulate iron while sprouting in order to obtain food fortificant”, Acta Scientiarum Polonorum- Technologia Alimentaria, 15, 333-338, 2016. DOI: 10.17306/J.AFS.2016.3.32
Iwona Morkunas, Agnieszka Woźniak, Magda Formela, Van Chung Mai, Łukasz Marczak, Dorota Narożna, Beata Borowiak-Sobkowiak, Christina Kühn, Bernhard Grimm, „Pea aphid infestation induces changes in flavonoids, antioxidative defence, soluble sugars and sugar transporter expression in leaves of pea seedlings”, Protoplasma, 253, 1063-1079, 2016. DOI: 10.1007/s00709-015-0865-7
Angela D. Bhalla, Alireza Khodadadi-Jamayran, Yanjie Li, David R. Lynch, Marek Napierała, „Deep sequencing of mitochondrial genomes reveals increased mutation load in Friedreich's ataxia”, Annals of Clinical and Translational Neurology, 3, 523-536, 2016. DOI: 10.1002/acn3.322
Aleksander Jamsheer, Ewelina M. Olech, Kazimierz Kozłowski, Marek Niedziela, Anna Sowińska-Seidler, Monika Obara-Moszyńska, Anna Latos-Bieleńska, Marek Karczewski, Tomasz Zemojtel, „Exome sequencing reveals two novel compound heterozygous XYLT1 mutations in a Polish patient with Desbuquois dysplasia type 2 and growth hormone deficiency”, Journal of Human Genetics, 61, 577-583, 2016. DOI: 10.1038/jhg.2016.30
Jolanta Brzezińska, Agnieszka Witkowska, Sandra Bałabańska, Marcin K. Chmielewski, „2-Pyridinyl-N-(2,4-difluorobenzyl)aminoethyl Group As Thermocontrolled Implement for Protection of Carboxylic Acids”, Organic Letters, 18, 3230-3233, 2016. DOI: 10.1021/acs.orglett.6b01475
Katarzyna Pachulska-Wieczorek, Stuart F. J. Le Grice, Katarzyna J. Purzycka, „Determinants of Genomic RNA Encapsidation in the Saccharomyces cerevisiae Long Terminal Repeat Retrotransposons Ty1 and Ty3”, Viruses, 8, art. nr 193, 2016. DOI: 10.3390/v8070193
Aleksandra Małyska, Robert Bolla, Tomasz Twardowski, „The Role of Public Opinion in Shaping Trajectories of Agricultural Biotechnology”, Trends in Biotechnology, 34, 530-534, 2016. DOI: 10.1016/j.tibtech.2016.03.005
Marcin Biesiada, Katarzyna Pachulska-Wieczorek, Ryszard W. Adamiak, Katarzyna J. Purzycka, „RNAComposer and RNA 3D structure prediction for nanotechnology”, Methods, 103, 120-127, 2016. DOI: 10.1016/j.ymeth.2016.03.010
Indrajit Deb, Rupak Pal, Joanna Sarzyńska, Ansuman Lahiri, „Reparameterizations of the χ Torsion and Lennard-Jones σ Parameters Improve the Conformational Characteristics of Modified Uridines”, Journal of Computational Chemistry, 37, 1576-1588, 2016. DOI: 10.1002/jcc.24374
Agnieszka Szymańska-Michalak, Dariusz Wawrzyniak, Grzegorz Framski, Marta Kujda, Paulina Zgoła, Jacek Stawiński, Jan Barciszewski, Jerzy Boryski, Adam Kraszewski, „New 3′-O-aromatic acyl-5-fluoro-2′-deoxyuridine derivatives as potential anticancer agents”, European Journal of Medicinal Chemistry, 115, 41-52, 2016. DOI: 10.1016/j.ejmech.2016.03.010
Paweł Wojciechowski, Wojciech Frohmberg, Michał Kierzynka, Piotr Żurkowski, Jacek Błażewicz, „G-MAPSEQ – a new method for mapping reads to a reference genome”, Foundations of Computing and Decision Sciences, 41, 123-142, 2016. DOI: 10.1515/fcds-2016-0007
Mario C. Lopez-Loces, Jędrzej Musiał, Jonathan E. Pecero, Hector J. Fraire-Huacuja, Jacek Błażewicz, Pascal Bouvry, „Exact and heuristic approaches to solve the Internet shopping optimization problem with delivery costs”, International Journal of Applied Mathematics and Computer Science, 24, 391-406, 2016. DOI: 10.1515/amcs-2016-0028
Joanna E. Raczyńska, Alexander Wlodawer, Mariusz Jaskólski, „Prior knowledge or freedom of interpretation? A critical look at a recently published classification of “novel” Zn binding sites”, Proteins-Structure and Bioinformatics, 84, 770-776, 2016. DOI: 10.1002/prot.25024
Magdalena Bodnar, Magdalena Łuczak, Kinga Bednarek, Łukasz Szylberg, Andrzej Marszałek, Reidar Grenman, Krzysztof Szyfter, Małgorzata Jarmuz-Szymczak, Maciej Giefing, „Proteomic profiling identifies the inorganic pyrophosphatase (PPA1) protein as a potential biomarker of metastasis in laryngeal squamous cell carcinoma”, Amino Acids, 48, 1469–1476, 2016. DOI: 10.1007/s00726-016-2201-8
Michał Góralski, Paula Sobieszczańska, Aleksandra Obrepalska-Stęplowska, Aleksandra Świercz, Agnieszka Żmieńko, Marek Figlerowicz, „A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly”, Plant Methods, 12, art. nr 28, 2016. DOI: 10.1186/s13007-016-0128-4
Joanna Śliwiak, Zbigniew Dauter, Mariusz Jaskólski, „Crystal Structure of Hyp-1, a Hypericum perforatum PR-10 Protein, in Complex with Melatonin”, Frontiers in Plant Science, 7, art. nr 668, 2016. DOI: 10.3389/fpls.2016.00668
Henning Frerigmann, Mariola Piślewska-Bednarek, Andrea Sánchez-Vallet, Antonio Molina, Erich Glawischnig, Tamara Gigolashvili, Paweł Bednarek, „Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products”, Molecular Plant, 9, 682-695, 2016. DOI: 10.1016/j.molp.2016.01.006
Tomasz P. Kaczyński, Tomasz Manszewski, Marcin K. Chmielewski, „Stereoselective P-Cyclisation and Diastereoisomeric Purification of 5-Phenyl-3-(pyridin-2-yl)-1,3,2-oxazaphospholidine Formed from a Thermolabile Protecting Group”, European Journal of Organic Chemistry, 2016, 2522-2527, 2016. DOI: 10.1002/ejoc.201501596
Magdalena Łuczak, Joanna Suszyńska-Zajczyk, Łukasz Marczak, Dorota Formanowicz, Elżbieta Pawliczak, Maria Wanic-Kossowska, Maciej Stobiecki, „Label-Free Quantitative Proteomics Reveals Differences in Molecular Mechanism of Atherosclerosis Related and Non-Related to Chronic Kidney Disease”, International Journal of Molecular Sciences, 17, art. nr 631, 2016. DOI: 10.3390/ijms17050631
Damian Skrypnik, Marzena Ratajczak, Joanna Karolkiewicz, Edyta Mądry, Danuta Pupek-Musialik, Rita Hansdorfer-Korzon, Jarosław Walkowiak, Hieronim Jakubowski, Paweł Bogdański, „Effects of endurance and endurance–strength exercise on biochemical parameters of liver function in women with abdominal obesity”, Biomedicine & Pharmacotherapy, 80, 1-7, 2016. DOI: 10.1016/j.biopha.2016.02.017
Konstantinos Papadimitriou, Panagiotis K. Baharidis, Anastasios Georgoulis, Marion Engel, Maria Louka, Georgia Karamolegkou, Aggeliki Tsoka, Jochen Blom, Bruno Pot, Piotr Małecki, Wojciech Rypniewski, Harald Huber, Michael Schloter, Constantinos Vorgias, „Analysis of the complete genome sequence of the archaeon Pyrococcus chitonophagus DSM 10152 (formerly Thermococcus chitonophagus)”, Extremophiles, 20, 351-361, 2016. DOI: 10.1007/s00792-016-0826-x
David J. Garfinkel, Jessica M. Tucker, Agniva Saha, Yuri Nishida, Katarzyna Pachulska-Wieczorek, Leszek Błaszczyk, Katarzyna J. Purzycka, „A self-encoded capsid derivative restricts Ty1 retrotransposition in Saccharomyces”, Current Genetics, 62, 321-329, 2016. DOI: 10.1007/s00294-015-0550-6
Aleksander Tworak, Anna Urbanowicz, Jan Podkowiński, Anna Kurzyńska-Kokorniak, Natalia Koralewska, Marek Figlerowicz, „Six Medicago truncatula Dicer-like protein genes are expressed in plant cells and upregulated in nodules”, Plant Cell Reports, 35, 1043-1052, 2016. DOI: 10.1007/s00299-016-1936-8
Zofia Jahnz-Wechmann, Grzegorz R. Framski, Piotr A. Januszczyk, Jerzy Boryski, „Base-Modified Nucleosides: Etheno Derivatives”, Frontiers in Chemistry, 4, art. nr 19, 2016. DOI: 10.3389/fchem.2016.00019
Anna Urbanowicz, Dominik Lewandowski, Kamil Szpotkowski, Marek Figlerowicz, „Tick receptor for outer surface protein A from Ixodes ricinus — the first intrinsically disordered protein involved in vector-microbe recognition”, Scientific Reports, 6, art. nr 25205, 2016. DOI: 10.1038/srep25205
Agnieszka Belter, Katarzyna Rolle, Monika Piwecka, Agnieszka Fedoruk-Wyszomirska, Mirosława Z. Naskręt-Barciszewska, Jan Barciszewski, „Inhibition of miR-21 in glioma cells using catalytic nucleic acids”, Scientific Reports, 6, art. nr 24516, 2016. DOI: 10.1038/srep24516
Anna Kurzyńska-Kokorniak, Maria Pokornowska, Natalia Koralewska, Weronika Hoffmann, Krystyna Bieńkowska-Szewczyk, Marek Figlerowicz, „Revealing a new activity of the human Dicer DUF283 domain in vitro”, Scientific Reports, 6, art. nr 23989, 2016. DOI: 10.1038/srep23989
Dagmara Baraniak, Daniel Baranowski, Piotr Ruszkowski, Jerzy Boryski, „3'-O- and 5'-O-Propargyl Derivatives of 5-Fluoro-2'-Deoxyuridine: Synthesis, Cytotoxic Evaluation and Conformational Analysis”, Nucleosides, Nucleotides & Nucleic Acids, 35, 178-194, 2016. DOI: 10.1080/15257770.2015.1122199
Metin Turkay, Giovanni Felici, Marta Szachniuk, Piotr Łukasiak, „Recent Advances in Operations Research in Computational Biology, Bioinformatics and Medicine”, Rairo – Operations Research, 50, 327-330, 2016. DOI: 10.1051/ro/2015036
Natalia Szostak, Szymon Wasik, Jacek Błażewicz, „Hypercycle”, PLoS Computational Biology, 12, art. nr e1004853, 2016. DOI: 10.1371/journal.pcbi.1004853
Patrick M. Perrigue, Joseph Najbauer, Jan Barciszewski, „Histone demethylase JMJD3 at the intersection of cellular senescence and cancer”, Biochimica et Biophysica Acta - Reviews on Cancer, 1865, 237-244, 2016. DOI: 10.1016/j.bbcan.2016.03.002
Jakub Barciszewski, Janusz Wiśniewski, Robert Kołodziejczyk, Mariusz Jaskólski, Dariusz Rakus, Andrzej Dzugaj, „T-to-R switch of muscle fructose-1,6-bisphosphatase involves fundamental changes of secondary and quaternary structure”, Acta Crystallographica Section D – Structural Biology, 72, 536-550, 2016. DOI: 10.1107/S2059798316001765
Paulina Gałka-Marciniak, Marta Olejniczak, Julia Staręga-Rosłan, Michał W. Szczęśniak, Izabela Makałowska, Włodzimierz J. Krzyżosiak, „siRNA release from pri-miRNA scaffolds is controlled by the sequence and structure of RNA”, Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 1859, 639-649, 2016. DOI: 10.1016/j.bbagrm.2016.02.014
Kamil Kwarciak, Marcin Radom, Piotr Formanowicz, „A multilevel ant colony optimization algorithm for classical and isothermic DNA sequencing by hybridization with multiplicity information available”, Computational Biology and Chemistry, 61, 109-120, 2016. DOI: 10.1016/j.compbiolchem.2016.01.010
Martyna O. Urbanek, Włodzimierz J. Krzyżosiak, „RNA FISH for detecting expanded repeats in human diseases”, Methods, 98, 115-123, 2016. DOI: 10.1016/j.ymeth.2015.11.017
Małgorzata Marcinkowska-Swojak, Luiza Handschuh, Paweł Wojciechowski, Michał Góralski, Kamil Tomaszewski, Maciej Kaźmierczak, Krzysztof Lewandowski, Mieczysław Komarnicki, Jacek Błażewicz, Marek Figlerowicz, Piotr Kozłowski, „Simultaneous detection of mutations and copy number variation of NPM1 in the acute myeloid leukemia using multiplex ligation-dependent probe amplification”, Mutation Research – Fundamental and Molecular Mechanisms of Mutagenesis, 786, 14-26, 2016. DOI: 10.1016/j.mrfmmm.2016.02.001
Katarzyna Rolle, Monika Piwecka, Agnieszka Belter, Dariusz Wawrzyniak, Jarosław Jeleniewicz, Mirosława Z. Barciszewska, Jan Barciszewski, „The Sequence and Structure Determine the Function of Mature Human miRNAs”, PLoS One, 11, art. nr e0151246, 2016. DOI: 10.1371/journal.pone.0151246
Dorota Gudanis, Łukasz Popenda, Kamil Szpotkowski, Ryszard Kierzek, Zofia Gdaniec, „Structural characterization of a dimer of RNA duplexes composed of 8-bromoguanosine modified CGG trinucleotide repeats: a novel architecture of RNA quadruplexes”, Nucleic Acids Research, 44, 2409-2416, 2016. DOI: 10.1093/nar/gkv1534
Katarzyna Pachulska-Wieczorek, Leszek Błaszczyk, Marcin Biesiada, Ryszard W. Adamiak, Katarzyna J. Purzycka, „The matrix domain contributes to the nucleic acid chaperone activity of HIV-2 Gag”, Retrovirology, 13, art. nr 18, 2016. DOI: 10.1186/s12977-016-0245-1
Rafał Głowacki, Justyna Stachniuk, Kamila Borowczyk, Hieronim Jakubowski, „Quantification of homocysteine and cysteine by derivatization with pyridoxal 5'-phosphate and hydrophilic interaction liquid chromatography”, Analytical and Bioanalytical Chemistry, 408, 1935-1941, 2016. DOI: 10.1007/s00216-016-9308-3
Agnieszka Kiliszek, Katarzyna Banaszak, Zbigniew Dauter, Wojciech Rypniewski, „The first crystal structures of RNA–PNA duplexes and a PNA-PNA duplex containing mismatches—toward anti-sense therapy against TREDs”, Nucleic Acids Research, 44, 1937–1943, 2016. DOI: 10.1093/nar/gkv1513
Marek Szymański, Michał Wierzbicki, Mirosław Gilski, Hanna Jędrzejewska, Marcin Sztylko, Piotr Cmoch, Aleksander Shkurenko, Mariusz Jaskólski, Agnieszka Szumna, „Mechanochemical Encapsulation of Fullerenes in Peptidic Containers Prepared by Dynamic Chiral Self-Sorting and Self-Assembly”, Chemistry – A European Journal, 22, 3148-3155, 2016. DOI: 10.1002/chem.201504451
Marta Szabat, Dorota Gudanis, Weronika Kotkowiak, Zofia Gdaniec, Ryszard Kierzek, Anna Pasternak, „Thermodynamic Features of Structural Motifs Formed by β-L-RNA”, PLoS One, 11, art. nr e0149478, 2016. DOI: 10.1371/journal.pone.0149478
Elżbieta Lenartowicz, Julita Kęsy, Agnieszka Ruszkowska, Marta Soszyńska-Jóźwiak, Paula Michalak, Walter N. Moss, Douglas H. Turner, Ryszard Kierzek, Elżbieta Kierzek, „Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus”, PLoS One, 11, art. nr e0148281, 2016. DOI: 10.1371/journal.pone.0148281
Wladek Minor, Zbigniew Dauter, John R.Helliwell, Mariusz Jaskólski, Alexander Wlodawer, „Safeguarding Structural Data Repositories against Bad Apples”, Structure, 24, 216-220, 2016. DOI: 10.1016/j.str.2015.12.010
Mirosław Gilski, Paweł Drożdżal, Ryszard Kierzek, Mariusz Jaskólski, „Atomic resolution structure of a chimeric DNA-RNA Z-type duplex in complex with Ba2+ ions: a case of complicated multi-domain twinning”, Acta Crystallographica Section D – Structural Biology, 72, 211-223, 2016. DOI: 10.1107/S2059798315024365
Marta Olejniczak, Martyna O. Urbanek, Edyta Jaworska, Łukasz Witucki, Michał W. Szczęśniak, Izabela Makałowska, Włodzimierz J. Krzyżosiak, „Sequence-non-specific effects generated by various types of RNA interference triggers”, Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 1859, 306-314, 2016. DOI: 10.1016/j.bbagrm.2015.11.005
Jakub Cieślak, Piotr Pawlak, Łukasz Wodas, Alicja Borowska, Anna Stachowiak, Kamila Puppel, Beata Kuczyńska, Magdalena Łuczak, Łukasz Marczak, Mariusz Mackowski, „Characterization of equine CSN1S2 variants considering genetics, transcriptomics, and proteomics”, Journal of Dairy Science, 99, 1277-1285, 2016. DOI: 10.3168/jds.2015-9807
Hieronim Jakubowski, „Aminoacyl-tRNA synthetases and the evolution of coded peptide synthesis: the Thioester World”, FEBS Letters, 590, 469-481, 2016. DOI: 10.1002/1873-3468.12085
Weronika Kotkowiak, Anna Pasternak, Ryszard Kierzek, „Studies on Transcriptional Incorporation of 5’-N-Triphosphates of 5’-Amino-5’-Deoxyribonucleosides”, PLoS One, 11, art. nr e0148282, 2016. DOI: 10.1371/journal.pone.0148282
Łukasz Sobotta, Marcin Wierzchowski, Michał Mierzwicki, Zofia Gdaniec, Jadwiga Mielcareka, Leentje Persoons, Tomasz Gośliński, Jan Balzarini, „Photochemical studies and nanomolar photodynamic activities of phthalocyanines functionalized with 1,4,7-trioxanonyl moieties at their non-peripheral positions”, Journal of Inorganic Biochemistry, 155, 76-81, 2016. DOI: 10.1016/j.jinorgbio.2015.11.006
Martyna Barciszewska, Agnieszka Sucha, Sandra Bałabańska, Marcin K. Chmielewski, „Gel electrophoresis in a polyvinylalcohol coated fused silica capillary for purity assessment of modified and secondary-structured oligo- and polyribonucleotides”, Scientific Reports, 6, art. nr 19437, 2016. DOI: 10.1038/srep19437
Ewa Sobieszczuk-Nowicka, Szymon Kubala, Agnieszka Żmieńko, Arleta Małecka, Jolanta Legocka, „From Accumulation to Degradation: Reprogramming Polyamine Metabolism Facilitates Dark-Induced Senescence in Barley Leaf Cells”, Frontiers in Plant Science, 6, art. nr 1193, 2016. DOI: 10.3389/fpls.2015.01198
Katarzyna Klonowska, Karol Czubak, Marzena Wojciechowska, Luiza Handschuh, Agnieszka Żmieńko, Marek Figlerowicz, Hanna Dams-Kozłowska, Piotr Kozłowski, „Oncogenomic portals for the visualization and analysis of genome-wide cancer data”, Oncotarget, 7, 176-192, 2016. DOI: 10.18632/oncotarget.6128
Maciej Szymański, Andrzej Zieleziński, Jan Barciszewski, Volker A. Erdmann, Wojciech M. Karłowski, „5SRNAdb: an information resource for 5S ribosomal RNAs”, Nucleic Acids Research, 44, D180-D183, 2016. DOI: 10.1093/nar/gkv1081
Suresh Jivan Gadher, Łukasz Marczak, Magdalena Łuczak, Maciej Stobiecki, Piotr Widlak, Hana Kovarova, „Proteomic landscape in Central and Eastern Europe: the 9th Central and Eastern European Proteomic Conference, Poznań, Poland”, Expert Review of Proteomics, 13, 5-7, 2016. DOI: 10.1586/14789450.2016.1116391
Ariel Adamski, Marta A. Fik, Maciej Kubicki, Zbigniew Hnatejko, Dorota Gurda, Agnieszka Fedoruk-Wyszomirska, Eliza Wyszko, Dariusz Kruszka, Zbigniew Dutkiewicz, Violetta Patroniak, „Full characterization and cytotoxic activity of new silver(I) and copper(I) helicates with quaterpyridine”, New Journal of Chemistry, 40, 7943-7957, 2016. DOI: 10.1039/c5nj03601a
Magdalena Materna, Jacek Stawiński, Agnieszka Kiliszek, Wojciech Rypniewski, Michał Sobkowski, „Oxyonium phosphobetaines – unusually stable nucleophilic catalyst–phosphate complexes formed from H-phosphonates and N-oxides”, RSC Advances, 6, 14448-14451, 2016. DOI: 10.1039/c5ra27465f
M. Pastorczyk, P. Bednarek, „Chapter Seven - The Function of Glucosinolates and Related Metabolites in Plant Innate Immunity”[w:] Glucosinolates, Stanislav Kopriva (red.), seria Advances in Botanical Research, 80, 171-198, 2016. DOI: 10.1016/bs.abr.2016.06.007
Jan Barciszewski, „RNA Around the Clock: Volker A. Erdmann in Memoriam”, [w:] Modified Nucleic Acids in Biology and Medicine, Stefan Jurga, Volker A. Erdmann, Jan Barciszewski (red.), seria RNA Technologies, vol. 80 , IX-XI, 2016, DOI: 10.1007/978-3-319-34175-0
Stefan Jurga, Volker A. Erdmann, Jan Barciszewski, „The Power of Modified Nucleic Acids Preface”, [w:] Modified Nucleic Acids in Biology and Medicine, Stefan Jurga, Volker A. Erdmann, Jan Barciszewski (red.), seria RNA Technologies, vol. 80, V-VII, 2016. DOI: 10.1007/978-3-319-34175-0
Agnieszka Fedoruk-Wyszomirska, Wojciech T. Markiewicz, Jan Barciszewski, „New inhibitors of DNA methyltransferase 1 based on cytosine scaffold”, BioTechnologia, 97, 323-325, 2016. DOI:10.5114/bta.2016.64550
Anna M. Mleczko, Kamilla Bąkowska-Żywicka, „When small RNAs become smaller: emerging functions of snoRNAs and their derivatives”, Acta Biochimica Polonica, 63, 601-607, 2016. DOI: 10.18388/abp.2016_1330
Magdalena Małgowska, Karolina Czajczyńska, Dorota Gudanis, Aleksander Tworak, Zofia Gdaniec, „Overview of the RNA G-quadruplex structures”, Acta Biochimica Polonica, 63, 609-621, 2016. DOI: 10.18388/abp.2016_1335
Mariola Dutkiewicz, Aleksandra Stachowiak, Agata Świątkowska, Jerzy Ciesiołka, „Structure and function of RNA elements present in enteroviral genomes”, Acta Biochimica Polonica, 63, 623-630, 2016. DOI: 10.18388/abp.2016_1337
Agata Tyczewska, Joanna Gracz, Jakub Kuczyński, Tomasz Twardowski, „ Deciphering the soybean molecular stress response via high-throughput approaches”, Acta Biochimica Polonica, 63, 631-643, 2016. DOI: 10.18388/abp.2016_1340
Agata Świątkowska, Paulina Żydowicz, Joanna Sroka, Jerzy Ciesiołka, „The role of the 5' terminal region of p53 mRNA in the p53 gene expression”, Acta Biochimica Polonica, 63, 645-651, 2016. DOI: 10.18388/abp.2016_1342
Kamila Pawlicka, Patrick M. Perrigue, Jan Barciszewski, „Regulatory RNAs in Planarians”, Acta Biochimica Polonica, 63, 681-686, 2016. DOI: 10.18388/abp.2016_1355
Małgorzata Baranek, Wojciech T. Markiewicz, Jan Barciszewski, „Selected small molecules as inducers of pluripotency”, Acta Biochimica Polonica, 63, 709-716, 2016. DOI: 10.18388/abp.2016_1363
Marta Orlicka-Płocka, Dorota Gurda, Agnieszka Fedoruk-Wyszomirska, Iwona Smolarek, Eliza Wyszko, „Circulating microRNAs in Cardiovascular Diseases”, Acta Biochimica Polonica, 63, 725-729, 2016. DOI: 10.18388/abp.2016_1334
Ewa Woźniak, Tomasz Twardowski, „The current state of bioeconomy in Poland”, Acta Biochimica Polonica, 63, 731-735, 2016. DOI: 10.18388/abp.2016_1365
Maciej Antczak, Mariusz Popenda, Tomasz Zok, Joanna Sarzyńska, Tomasz Ratajczak, Katarzyna Tomczyk, Ryszard W. Adamiak, Marta Szachniuk, „New functionality of RNAComposer: application to shape the axis of miR160 precursor structure”, Acta Biochimica Polonica, 63, 737-744, 2016. DOI: 10.18388/abp.2016_1329
Agnieszka Rybarczyk, Paulina Jackowiak, Marek Figlerowicz, Jacek Błażewicz, „Computational prediction of nonenzymatic RNA degradation patterns”, Acta Biochimica Polonica, 63, 745-751, 2016. DOI: 10.18388/abp.2016_1331
Jakub Wiedemann, Maciej Miłostan, „StructAnalyzer - a tool for sequence vs. structure similarity analysis”, Acta Biochimica Polonica, 63, 753-757, 2016. DOI: 10.18388/abp.2016_1333
Agnieszka Fiszer, Marianna E. Ellison-Klimontowicz, Włodzimierz J. Krzyżosiak, „Silencing of genes responsible for polyQ diseases using chemically modified single-stranded siRNAs”, Acta Biochimica Polonica, 63, 759-764, 2016. DOI: 10.18388/abp.2016_1336
Grzegorz Framski, Dariusz Wawrzyniak, Zofia Jahnz-Wechmann, Agnieszka Szymańska-Michalak, Adam Kraszewski, Jan Barciszewski, Jerzy Boryski, Jacek Stawiński, „Searching for anti-glioma activity. Ribonucleoside analogues with modifications in nucleobase and sugar moieties”, Acta Biochimica Polonica, 63, 765-771, 2016. DOI: 10.18388/abp.2016_1338
Natalia Koralewska, Weronika Hoffmann, Maria Pokornowska, Marek Milewski, Andrea Lipińska, Krystyna Bieńkowska-Szewczyk, Marek Figlerowicz, Anna Kurzyńska-Kokorniak, „How short RNAs impact the human ribonuclease Dicer activity: putative regulatory feedback-loops and other RNA-mediated mechanisms controlling microRNA processing”, Acta Biochimica Polonica, 63, 773-783, 2016. DOI: 10.18388/abp.2016_1339
Marta Magdalena Gabryelska, Eliza Wyszko, Jan Barciszewski, „RNA dactyloscopy”, Acta Biochimica Polonica, 63, 785-787, 2016. DOI: 10.18388/abp.2016_1341
Anna Hojka-Osińska, Lucyna Budźko, Agnieszka Żmieńko, Agnieszka Rybarczyk, Patrick Maillard, Agata Budkowska, Marek Figlerowicz, Paulina Jackowiak, „RNA-Seq-based analysis of differential gene expression associated with hepatitis C virus infection in a cell culture”, Acta Biochimica Polonica, 63, 789-798, 2016. DOI: 10.18388/abp.2016_1343
Joanna Gracz, „Alternative splicing in plant stress response”, BioTechnologia, 97, 9-17, 2016. DOI: 10.5114/bta.2016.57719
Mateusz Walkowiak, Anna M. Mleczko, Kamilla Bąkowska-Żywicka, „Evaluation of methods for the detection of low-abundant snoRNA-derived small RNAs in Saccharomyces cerevisiae”, BioTechnologia, 97, 19-26, 2016. DOI:10.5114/bta.2016.58540
Dariusz Wawrzyniak, Lech Celewicz, Jan Barciszewski, „Novel anti-aging composition for topical skin care”, BioTechnologia, 97, 51-54, 2016. DOI:10.5114/bta.2016.57720
Katarzyna Rolle, Jan Barciszewski, „The new RNAi-based therapy for brain tumors”, BioTechnologia, 97, 153-155, 2016. DOI:10.5114/bta.2016.60785
Lucyna Budźko, Paulina Jackowiak, Marek Figlerowicz, „Production of an active human AID enzyme in a bacterial system”, BioTechnologia, 97, 235-239, 2016. DOI:10.5114/bta.2016.62360
Tomasz Prejzendanc, Szymon Wasik, Jacek Błażewicz, „Computer Representations of Bioinformatics Models”, Current Bioinformatics, 11, 551-560, 2016. DOI: 10.2174/1574893610666150928193510
Maciej Sassek, Ewa Pruszyńska-Oszmałek, Paweł A. Kołodziejski, Dawid Szczepankiewicz, Przemysław Kaczmarek, Marianna Wieloch, Katarzyna Kurto, Leszek Nogowski, Krzysztof W. Nowak, Mathias Z. Strowski, Paweł Maćkowiak, „Resistin is produced by rat pancreatic islets and regulates insulin and glucagon in vitro secretion”, Islets, 8, 177-185, 2016. DOI: 10.1080/19382014.2016.1251538
Natalia Stec, Joanna Banasiak, Michał Jasiński, „Abscisic acid - an overlooked player in plant-microbe symbioses formation?”, Acta Biochimica Polonica, 63, 53-58, 2016. DOI: 10.18388/abp.2015_1210
Agnieszka Mickiewicz, Agnieszka Rybarczyk, Joanna Sarzyńska, Marek Figlerowicz, Jacek Błażewicz, „AmiRNA Designer - new method of artificial miRNA design”, Acta Biochimica Polonica, 63, 71-77, 2016. DOI: 10.18388/abp.2015_989
Mieczysław Kuraś, Krzysztof Gulewicz, Olga Bemowska-Kałabun, Małgorzata Wierzbicka, „Mitotic activity of a new phytotherapeutic product with a trade name of “Ganomix”, Caryologia, 69, 295-302, 2016. DOI: 10.1080/00087114.2016.1188358
Wojciech Rypniewski, Katarzyna Banaszak, Tadeusz Kuliński, Agnieszka Kiliszek, „Watson–Crick-like pairs in CCUG repeats: evidence for tautomeric shifts or protonation”, RNA, 22, 22-31, 2016. DOI: 10.1261/rna.052399.115
Michal Kryjewski, Tomasz Rebis, Grzegorz Milczarek, Zofia Gdaniec, Tomasz Gośliński, Jadwiga Mielcarek, „Magnesium(II) 1-(1-adamantylsulfanyl)phthalocyanine – synthesis, photochemical and electrochemical properties”, New Journal of Chemistry, 40, 9774-9780, 2016. DOI: 10.1039/c6nj02045c
Natalia Zeber-Lubecka, Maria Kulecka, Filip Ambrozkiewicz, Agnieszka Paziewska, Krzysztof Goryca, Jakub Karczmarski, Tymon Rubel, Wojciech Wojtowicz, Piotr Młynarz, Łukasz Marczak, Roman Tomecki, Michał Mikula, Jerzy Ostrowski, „Limited prolonged effects of rifaximin treatment on irritable bowel syndrome-related differences in the fecal microbiome and metabolome”, Gut Microbes, 7, 397-413, 2016. DOI: 10.1080/19490976.2016.1215805
Mirosław Mleczek, Paweł Rutkowski, Przemysław Niedzielski, Piotr Goliński, Monika Gąsecka, Tomisław Kozubik, Jędrzej Dąbrowski, Sylwia Budzyńska, Jarosław Pakuła, „The role of selected tree species in industrial sewage sludge/flotation tailing management”, International Journal of Phytoremediation, 18, 1086-1095, 2016. DOI: 10.1080/15226514.2016.1183579
Maurycy Szlenkier, Karol Kamel, Jerzy Boryski, „Regioselective Mitsunobu Reaction of Partially Protected Uridine”, Nucleosides, Nucleotides & Nucleic Acids, 35, 410-425, 2016. DOI: 10.1080/15257770.2016.1188943
Mirosława Z. Barciszewska, Patrick M. Perrigue, Jan Barciszewski, „tRNA - the golden standard in molecular biology”, Molecular BioSystems, 12, 12-17, 2016. DOI: 10.1039/c5mb00557d
Ewelina M. Olech, Tomasz Zemojtel, Anna Sowińska-Seidler, Peter N. Robinson, Stefan Mundlos, Marek Karczewski, Aleksander Jamsheer, „Identification of a molecular defect in a stillborn fetus with perinatal lethal hypophosphatasia using a disease-associated genome sequencing approach”, Polish Journal of Pathology, 67, 78-83, 2016. DOI: 10.5114/PJP.2016.59480
M. Honcharenko, B. Bestas, M. Jeżowska, B. A. Wojtczak, P. M. D. Moreno, J. Romanowska, S. M. Bächle, E. Darzynkiewicz, J. Jemielity, C. I. E. Smith, R. Strömberg, „Synthetic m3G-CAP attachment necessitates a minimum trinucleotide constituent to be recognised as a nuclear import signal”, RSC Advances, 6, 51367-51373, 2016. DOI: 10.1039/c6ra09568b
K. Stokowa-Sołtys, N. A. Barbosa, A. Kasprowicz, R. Wieczorek, N. Gaggelli, E. Gaggelli, G. Valensin, J. Wrzesiński, J. Ciesiołka, T. Kuliński, W. Szczepanik, M. Jeżowska-Bojczuk, „Studies of viomycin, an anti-tuberculosis antibiotic: copper(II) coordination, DNA degradation and the impact on delta ribozyme cleavage activity”, Dalton Transactions, 45, 8645-8658, 2016. DOI: 10.1039/c6dt00245e
Joanna Śliwiak, Rafał Dolot, Karolina Michalska, Kamil Szpotkowski, Grzegorz Bujacz, Michał Sikorski, Mariusz Jaskólski, „Crystallographic and CD probing of ligand-induced conformational changes in a plant PR-10 protein”, Journal of Structural Biology, 193, 55-66, 2016. DOI: 10.1016/j.jsb.2015.11.008
Katarzyna M. Lamperska, Piotr Kozłowski, Tomasz Kolenda, Anna Teresiak, Renata Bliźniak, Weronika Przybyła, Michał M. Masternak, Paweł Golusiński, Wojciech Golusiński, „Unpredictable changes of selected miRNA in expression profile of HNSCC”, Cancer Biomarkers, 16, 55-64, 2016. DOI: 10.3233/CBM-150540
Tomasz Ratajczak, Barbara Uszczyńska, Emilia Frydrych-Tomczak, Marcin K. Chmielewski, „The “Clickable” Method for Oligonucleotide Immobilization Onto Azide-Functionalized Microarrays” [w:] Microarray Technology: Methods and Applications, Paul C.H. Li, Abootaleb Sedighi, Lin Wang (red.) seria Methods in Molecular Biology, 1368, 25-36, 2016. DOI: 10.1007/978-1-4939-3136-1_3
Agata Tyczewska, Kamilla Bąkowska-Żywicka, Joanna Gracz, Tomasz Twardowski, „Stress Responsive Non-protein Coding RNAs”, [w:] Abiotic and Biotic Stress in Plants – Recent Advances and Future Perspectives, A. K. Shanker, C. Shanker (red.), 153-181, 2016. DOI: 10.5772/61347

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2024

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